diff --git a/.github/workflows/build_run_SETAS1.yml b/.github/workflows/build_run_SETAS1.yml index 6dd56b9..879bc14 100644 --- a/.github/workflows/build_run_SETAS1.yml +++ b/.github/workflows/build_run_SETAS1.yml @@ -19,7 +19,7 @@ jobs: steps: - name: checkout repo - uses: actions/checkout@v4 + uses: actions/checkout@v6 with: fetch-depth: 0 # Ensures all branches and tags are fetched @@ -39,13 +39,13 @@ jobs: r-version: '4.2.0' - - name: Compile and Run Atlantis in Ubuntu 18.04 using Docker + - name: Compile and Run Atlantis in Ubuntu 20.04 using Docker run: | - docker run --rm -v $(pwd):/workspace -w /workspace ubuntu:18.04 bash -c " + docker run --rm -v $(pwd):/workspace -w /workspace ubuntu:20.04 bash -c " TZ=America/New_York && ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone && apt-get update && - apt-get install -yq build-essential autoconf libnetcdf-dev libxml2-dev libproj-dev subversion valgrind dos2unix gawk nano r-base git && + apt-get install -yq build-essential autoconf libnetcdf-dev libxml2-dev libproj-dev subversion valgrind dos2unix gawk nano r-base r-base-dev git && cd atlantis && aclocal && autoheader && autoconf && automake -a && ./configure --enable-rassesslink && make && make install && echo 'Now run the model!' && cd ../example && diff --git a/atlantis/PreRules.am b/atlantis/PreRules.am index fa37ad0..a49807a 100755 --- a/atlantis/PreRules.am +++ b/atlantis/PreRules.am @@ -100,30 +100,28 @@ endif # AM_CFLAGS += -D SS3_LINK_ENABLED -I$(top_srcdir)/atSS3Link/include #endif -if RASSESS_LINK_ENABLED - AM_CFLAGS += -D RASSESS_LINK_ENABLED - -# NOTE: nested if statments # For the R links # A working R installation is required. # R must have been built with the '--enable-R-shlib' option enabled to provide the R shared library # Ensure the R_HOME environment variable is set appropriately # # R_HOME = $(shell R RHOME) -# on Ubuntu Linux if OS_LINUX - R_HOME = /usr/lib/R - R_BASE = /usr/lib/R -endif -# on OS X -if OS_MACOS - R_BASE = /Library/Frameworks/R.framework/Resources - R_HOME = /Library/Frameworks/R.framework/Resources + R_BASE = /usr/lib/R + R_HOME = /usr/lib/R +else + #if OS_MACOS + R_BASE = /Library/Frameworks/R.framework/Resources + R_HOME = /Library/Frameworks/R.framework/Resources endif - AM_CFLAGS += -I$(R_BASE)/include -I/usr/share/R/include +if RASSESS_LINK_ENABLED + AM_CFLAGS += -D RASSESS_LINK_ENABLED + AM_CFLAGS += -I$(R_BASE)/include -I/usr/share/R/include + AM_LDFLAGS = -L$(R_BASE)/lib LIBS += -L$(R_BASE)/lib -lR endif #fetching repo version from git AM_CFLAGS += -DRELEASE_VERSION=\"$(RELEASE_VERSION)\" + diff --git a/atlantis/atecology/atprocess.c b/atlantis/atecology/atprocess.c index f347481..024b5e5 100755 --- a/atlantis/atecology/atprocess.c +++ b/atlantis/atecology/atprocess.c @@ -1941,6 +1941,7 @@ void Calculate_Catch(MSEBoxModel *bm, BoxLayerValues *boxLayerInfo, FILE *llogfp if (FunctGroupArray[guild].isVertebrate == TRUE) { FunctGroupArray[guild].SizeNumCaught[cohort][nf][bm->current_box] += bm->FishingResults[nf][CatchAtAge_result_id]; FunctGroupArray[guild].SizeNumDiscard[cohort][nf][bm->current_box] += bm->FishingResults[nf][DiscardsAtAge_result_id]; + FunctGroupArray[guild].SizeCaught[cohort][nf][bm->current_box] += bm->FishingResults[nf][Catch_result_id]; } } else { bm->RecCatch[bm->current_box][guild][nf] += bm->FishingResults[nf][Catch_result_id]; diff --git a/atlantis/atlantisUtil/atUtilGroupIO.c b/atlantis/atlantisUtil/atUtilGroupIO.c index 8e860bb..ab9e3f5 100755 --- a/atlantis/atlantisUtil/atUtilGroupIO.c +++ b/atlantis/atlantisUtil/atUtilGroupIO.c @@ -840,7 +840,8 @@ int Util_Read_Functional_Group_XML(MSEBoxModel *bm, char *fileName, FILE *llogfp FunctGroupArray[i].X_RS = Util_Alloc_Init_1D_Double(FunctGroupArray[i].numCohortsXnumGenes, 0.0); FunctGroupArray[i].RAssessSpringSurvey = Util_Alloc_Init_2D_Double(bm->nbox, FunctGroupArray[i].numCohortsXnumGenes, 0.0); FunctGroupArray[i].RAssessAutumnSurvey = Util_Alloc_Init_2D_Double(bm->nbox, FunctGroupArray[i].numCohortsXnumGenes, 0.0); - + FunctGroupArray[i].RAssessSpringSurveySize = Util_Alloc_Init_2D_Double(bm->nbox, FunctGroupArray[i].numCohortsXnumGenes, 0.0); + FunctGroupArray[i].RAssessAutumnSurveySize = Util_Alloc_Init_2D_Double(bm->nbox, FunctGroupArray[i].numCohortsXnumGenes, 0.0); FunctGroupArray[i].min_wgt = Util_Alloc_Init_1D_Double(FunctGroupArray[i].numCohortsXnumGenes, 0.0); FunctGroupArray[i].max_wgt = Util_Alloc_Init_1D_Double(FunctGroupArray[i].numCohortsXnumGenes, 0.0); FunctGroupArray[i].rolling_wgt = Util_Alloc_Init_2D_Double(bm->K_rolling_cap_num + 1, FunctGroupArray[i].numCohortsXnumGenes, 0.0); @@ -1289,6 +1290,8 @@ void Free_Functional_Group_Memory(MSEBoxModel *bm) { free4d(FunctGroupArray[i].boxPopRatio); free2d(FunctGroupArray[i].RAssessSpringSurvey); free2d(FunctGroupArray[i].RAssessAutumnSurvey); + free2d(FunctGroupArray[i].RAssessSpringSurveySize); + free2d(FunctGroupArray[i].RAssessAutumnSurveySize); free1d(FunctGroupArray[i].min_wgt); free1d(FunctGroupArray[i].max_wgt); free2d(FunctGroupArray[i].rolling_wgt); diff --git a/atlantis/atlantisUtil/include/atFunctGroup.h b/atlantis/atlantisUtil/include/atFunctGroup.h index 818d720..c176cee 100644 --- a/atlantis/atlantisUtil/include/atFunctGroup.h +++ b/atlantis/atlantisUtil/include/atFunctGroup.h @@ -285,6 +285,9 @@ typedef struct { double ***SizeCaught; /**< Sampled catch - size in catch */ double **RAssessSpringSurvey; /**< Spring survey abundance - for RAssess */ double **RAssessAutumnSurvey; /**< Autumn survey abundance - for RAssess */ + double **RAssessSpringSurveySize; /**< Spring survey size - for RAssess */ + double **RAssessAutumnSurveySize; /**< Autumn survey size - for RAssess */ + /* Used in tracking informaiton for calcualting system cap in fisheries */ double *min_wgt; diff --git a/atlantis/atlantismain/Makefile.am b/atlantis/atlantismain/Makefile.am index c4ef816..5b3ce29 100755 --- a/atlantis/atlantismain/Makefile.am +++ b/atlantis/atlantismain/Makefile.am @@ -5,7 +5,8 @@ atlantisMergeddir=$(includedir)/atlantismain atlantisMerged_SOURCES = atlantismain.c atlantisboxmodel.h atlantisMerged_LDADD = -latlantisutil -latassess -latphysics -latecology -lateconomic -latmanage -latharvest \ - -latimplementation -latphysics -latConvertAtlantis -latlantisutil -lsjwlib -latSS3Link + -latimplementation -latphysics -latConvertAtlantis -latlantisutil -lsjwlib -latSS3Link \ + $(LIBS) SVNWCPATH = -D'ATLANTIS_WCPATH="$(shell svn info ../| grep URL | sed 's/URL: //g')"' SVNWCDATE = -D'ATLANTIS_WCDATE="$(shell svn info ../| grep "Last Changed Date:" | sed 's/Last Changed Date: //g')"' @@ -61,6 +62,10 @@ atlantisMerged_INCLUDES += -I$(top_srcdir)/atCLAMLink/include atlantisMerged_DEPENDENCIES += $(top_srcdir)/atCLAMLink/libatCLAMLink.a endif +if RASSESS_LINK_ENABLED +LIBDIRS += -L$(R_BASE)/lib +atlantisMerged_LDADD += -lR +endif #if SS3_LINK_ENABLED #LIBDIRS += -L$(top_srcdir)/atSS3Link diff --git a/atlantis/atmanage/atRlinkRAssess.c b/atlantis/atmanage/atRlinkRAssess.c index 3532046..dc1a144 100644 --- a/atlantis/atmanage/atRlinkRAssess.c +++ b/atlantis/atmanage/atRlinkRAssess.c @@ -45,7 +45,7 @@ void Do_RAssess(MSEBoxModel *bm, int species, int year, FILE *llogfp) { } // Reuse SS data generation code - GenData(bm, species, year); + //GenData(bm, species, year); // Not working for RAssess parameterization // Create and Popuate RAssessFile if(!bm->RAssess_initiated[species]) { @@ -89,95 +89,98 @@ FILE * Init_RAssess_File(MSEBoxModel *bm, int species) { } /* Write RAssess input file */ -void Populate_RAssessFile(FILE *fp, MSEBoxModel *bm, int groupIndex){ - int cohort, istock, isex, r, b, nf, this_age; - int iyr = (int)(bm->dayt/365.0); - int Nregions = (int)(bm->RBCestimation.RBCspeciesParam[groupIndex][NumRegions_id]); - int this_year = (int)(bm->dayt/365.0) + bm->RAssessRefYear - 1; // Assumes that as happens on Day 365 it would count first year as RefYear + 1 so need to -1 to get it to RefYear - double catchnum, discardnum, totlandings, catchsize, catchlen, counter1, counter2, this_size, this_length, - numspring, numautumn, calcM; - - for (cohort = 0; cohort < FunctGroupArray[groupIndex].numCohortsXnumGenes; cohort++) { - this_age = cohort * FunctGroupArray[groupIndex].ageClassSize; - fprintf(fp,"%d%s", this_year, bm->RassessColDelimiter); // calendar year - could be model year if needed - fprintf(fp,"%d%s", this_age, bm->RassessColDelimiter); // age – in years - - // TODO: Talk to RAssess about implications of cohort being multipe years - - catchnum = 0.0; - discardnum = 0.0; - totlandings = 0.0; - catchsize = 0.0; - counter1 = 0.0; - counter2 = 0.0; - this_size = 0.0; - this_length = 0.0; - - for (istock = 0; istock < FunctGroupArray[groupIndex].numStocks; istock++){ - for (isex = 0; isex < bm->K_num_sexes; isex++){ - this_size += bm->RBCestimation.RBCspeciesArray[groupIndex].MeanWtAge[istock][isex][cohort][iyr] * 1000.0; // convert weight to g from kg - this_length += bm->RBCestimation.RBCspeciesArray[groupIndex].MeanLenAge[istock][isex][cohort]; - counter1 += 1.0; - } - } - this_size /= counter1; - this_length /= counter1; - - for (nf = 0; nf < bm->K_num_fisheries; nf++) { - for (r = 0; r < Nregions; r++) { - totlandings += bm->RBCestimation.RBCspeciesArray[groupIndex].CatchData[nf][r][iyr] / 1000.0; // As going kg to tonnes - } - for (b = 0; b < bm->nbox; b++) { - catchnum += FunctGroupArray[groupIndex].SizeNumCaught[cohort][nf][b]; // - discardnum += FunctGroupArray[groupIndex].SizeNumDiscard[cohort][nf][b]; - catchsize += FunctGroupArray[groupIndex].SizeCaught[cohort][nf][b]; - counter2 += 1.0; - } - } - catchsize /= counter2; - catchlen = Get_Length(bm, catchsize, groupIndex); - - numspring = 0.0; - numautumn = 0.0; - for (b = 0; b < bm->nbox; b++) { - numspring += FunctGroupArray[groupIndex].RAssessSpringSurvey[cohort][b]; - numautumn += FunctGroupArray[groupIndex].RAssessAutumnSurvey[cohort][b]; - } - - fprintf(fp,"%f%s", catchnum + discardnum, bm->RassessColDelimiter); // total catch (in numbers at age) - fprintf(fp,"%f%s", catchlen, bm->RassessColDelimiter); // mean length at age in the catch in cm - fprintf(fp,"%f%s", catchsize, bm->RassessColDelimiter); // mean weight at age in the catch in grams - fprintf(fp,"%f%s", numspring, bm->RassessColDelimiter); // area swept abundance by age - fprintf(fp,"%f%s", this_size, bm->RassessColDelimiter); // weight at age, in grams - fprintf(fp,"%f%s", this_length, bm->RassessColDelimiter); // length at age in cm - fprintf(fp,"%f%s", FunctGroupArray[groupIndex].scaled_FSPB[cohort], bm->RassessColDelimiter); // proportion mature by age - fprintf(fp,"%f%s", numautumn, bm->RassessColDelimiter); // area swept abundance by age - - if(bm->RAssessFixedM) { - // If a parameter setting - fprintf(fp,"%f%s", FunctGroupArray[groupIndex].speciesParams[assess_nat_mort_id], bm->RassessColDelimiter); - } else { - // If using dynamic value - calcM = 0.0; - for (istock = 0; istock < FunctGroupArray[groupIndex].numStocks; istock++){ - calcM += (bm->calcTrackedMort[groupIndex][cohort][istock][finalM1_id] + bm->calcTrackedMort[groupIndex][cohort][istock][finalM2_id]); - } - fprintf(fp,"%f%s", calcM, bm->RassessColDelimiter); - } - - fprintf(fp,"%f", totlandings); // In tonnes - fprintf(fp,"\n"); +void Populate_RAssessFile(FILE *fp, MSEBoxModel *bm, int species){ + int cohort, this_age, b, nf; + int this_year = (int)(bm->dayt/365.0) + bm->RAssessRefYear - 1; + double catchnum, discardnum, catchsize, catchlen, counter1, this_size, this_length, numspring, numautumn, calcM; + + + for (cohort = 0; cohort < FunctGroupArray[species].numCohortsXnumGenes; cohort++) { + + this_age = cohort * FunctGroupArray[species].ageClassSize; + fprintf(fp,"%d%s", this_year, bm->RassessColDelimiter); // calendar year - could be model year if needed + fprintf(fp,"%d%s", this_age, bm->RassessColDelimiter); // age – in years + + // TODO: Talk to RAssess about implications of cohort being multipe years + + catchnum = 0.0; + discardnum = 0.0; + catchsize = 0.0; + catchlen = 0.0; + counter1 = 0.0; + this_size = 0.0; + this_length = 0.0; + + + for (nf = 0; nf < bm->K_num_fisheries; nf++) { + for (b = 0; b < bm->nbox; b++) { + catchnum += FunctGroupArray[species].SizeNumCaught[cohort][nf][b]; //Numbers caught + discardnum += FunctGroupArray[species].SizeNumDiscard[cohort][nf][b]; //Numbers discarded + catchsize += FunctGroupArray[species].SizeCaught[cohort][nf][b]; //Biomass caught + } + } + if (catchnum > 0.0) { + catchsize /= catchnum; + } else { + catchsize = 0.0; } - fflush(fp); - return; + catchlen = Ecology_Get_Size(bm, species, catchsize, cohort); + catchsize = catchsize * bm->X_CN * mg_2_g; //mg_2_g (0.02) includes wet weight + + numspring = 0.0; + numautumn = 0.0; + for (b = 0; b < bm->nbox; b++) { + numspring += FunctGroupArray[species].RAssessSpringSurvey[cohort][b]; + numautumn += FunctGroupArray[species].RAssessAutumnSurvey[cohort][b]; + + if (FunctGroupArray[species].RAssessSpringSurveySize[cohort][b] > 0.0) { + this_size += FunctGroupArray[species].RAssessSpringSurveySize[cohort][b]; + counter1 += 1.0; + } + } + + if (counter1 > 0.0) { + this_size /= counter1; + } else { + this_size = 0.0; + } + + this_length = Ecology_Get_Size(bm, species, this_size, cohort); + this_size = this_size * bm->X_CN * mg_2_g; + + fprintf(fp,"%f%s", catchnum + discardnum, bm->RassessColDelimiter); // total catch (in numbers at age) + fprintf(fp,"%f%s", catchlen, bm->RassessColDelimiter); // mean length at age in the catch in cm + fprintf(fp,"%f%s", catchsize, bm->RassessColDelimiter); // mean weight at age in the catch in grams + fprintf(fp,"%f%s", numspring, bm->RassessColDelimiter); // area swept abundance by age + fprintf(fp,"%f%s", this_size, bm->RassessColDelimiter); // weight at age, in grams + fprintf(fp,"%f%s", this_length, bm->RassessColDelimiter); // length at age in cm + fprintf(fp,"%f%s", FunctGroupArray[species].scaled_FSPB[cohort], bm->RassessColDelimiter); // proportion mature by age + fprintf(fp,"%f%s", numautumn, bm->RassessColDelimiter); // area swept abundance by age + + if(bm->RAssessFixedM) { + // If a parameter setting + fprintf(fp,"%f%s", FunctGroupArray[species].speciesParams[assess_nat_mort_id], bm->RassessColDelimiter); + } else { + // If using dynamic value + calcM = 0.0; + fprintf(fp,"%f%s", calcM, bm->RassessColDelimiter); + } + + fprintf(fp,"%f", catchsize*catchnum/1e+6); // Landings in tonnes + fprintf(fp,"\n"); + } + fflush(fp); + + return; } + /* Do survey data collection for purposes of RAssess estimate */ void RAssessSurvey(MSEBoxModel *bm, FILE *llogfp) { int springSurvey = 0; int sp, cohort, bb, b, den, sn, rn, k; - double sample_num, survey_num, q, avail, swept_area, rawwgt, rawlngth, rawn, this_wgt; + double sample_num, survey_num, q, avail, rawwgt, rawlngth, rawn; int fishery_id = bm->RAssessFisheryID; if (bm->TofY == bm->RAssessSpringSurveyDay) { @@ -188,7 +191,8 @@ void RAssessSurvey(MSEBoxModel *bm, FILE *llogfp) { for (sp = 0; sp < bm->K_num_tot_sp; sp++) { if (FunctGroupArray[sp].isTAC > 1) { - printf("Doing RAssess Survey for %s\n", FunctGroupArray[sp].groupCode); + fprintf(bm->logFile, "Doing RAssess survey (springSurvey = %d) for %s\n",springSurvey, FunctGroupArray[sp].groupCode); + fflush(bm->logFile); for (cohort = 0; cohort < FunctGroupArray[sp].numCohortsXnumGenes; cohort++) { for (bb = 0; bb < bm->nsbox; bb++) { @@ -198,27 +202,33 @@ void RAssessSurvey(MSEBoxModel *bm, FILE *llogfp) { sn = FunctGroupArray[sp].structNTracers[cohort]; rn = FunctGroupArray[sp].resNTracers[cohort]; - // Just use max size as do mixing in movement so undless sedentary then all same size anyways - for (k = 0; k < bm->boxes[b].nz; k++){ - this_wgt = (bm->boxes[b].tr[k][sn] + bm->boxes[b].tr[k][rn]); - if (this_wgt > rawwgt) { - rawwgt = this_wgt; - } + // Just use max size as do mixing in movement so unless sedentary then all same size anyways + rawwgt = 0.0; + rawn = 0.0; + for (k=0; k < bm->boxes[b].nz; k++) { + rawn += bm->boxes[b].tr[k][den]; + if ((bm->boxes[b].tr[k][sn] + bm->boxes[b].tr[k][rn]) > rawwgt) { + rawwgt = bm->boxes[b].tr[k][sn] + bm->boxes[b].tr[k][rn]; + } } - - rawlngth = Get_Length(bm, rawwgt, sp); + + // This sampling method needs checking, i.e adding error to weight + rawlngth = Ecology_Get_Size(bm, sp, rawwgt, cohort); avail = bm->SP_FISHERYprms[sp][fishery_id][avail_id]; q = Selectivity(bm, rawlngth, fishery_id, avail, 0, bm->logFile); // Also accounts for availability - swept_area = bm->FISHERYprms[fishery_id][swept_area_id] / (bm->boxes[b].area * bm->boxes[b].botz); - rawn = bm->boxes[b].tr[k][den]; sample_num = Assess_Add_Error(bm, flagcount, rawn, k_avgcount, k_varcount); - survey_num = sample_num * q * swept_area; + survey_num = sample_num * q; if (springSurvey) { FunctGroupArray[sp].RAssessSpringSurvey[cohort][b] = survey_num; + FunctGroupArray[sp].RAssessSpringSurveySize[cohort][b] = rawwgt; } else { FunctGroupArray[sp].RAssessAutumnSurvey[cohort][b] = survey_num; + FunctGroupArray[sp].RAssessAutumnSurveySize[cohort][b] = rawwgt; } + + fprintf(bm->logFile, "RAssess Survey: survey_num = %e, rawwgt = %e for ageclass = %d in box = %d\n", survey_num, rawwgt, cohort, b); + fflush(bm->logFile); } } } @@ -227,74 +237,206 @@ void RAssessSurvey(MSEBoxModel *bm, FILE *llogfp) { return; } -/** Reading in the file defining the TAC. Has an assumed format of +/** Reading in the file defining the TAC or Effort. + +The TAC file should have the following format + + fishery_id TAC + ID XX + + where ID is the index of fisheries as in fishery.csv file + and XX is the value of the TAC e.g. + + fishery_id TAC + 0 2e+07 + 1 0e+00 + 2 0e+00 + 3 0e+00 - TAC - XX + The Effort file should have the following format matching the parameters needed for effortmodel = 3 + meff and effort are the same value for each box per fishery - where XX is the value of the TAC e.g. + box fishery_id Effort_hdistrib1 Effort_hdistrib2 Effort_hdistrib3 Effort_hdistrib4 meff1 meff2 meff3 meff4 effort + 0 1 0 0 0 0 1 1 0 1.3 20000 + 1 1 0.2 0.2 0.2 0.2 1 1 0 1.3 20000 + 2 1 0.3 0.3 0.3 0.3 1 1 0 1.3 20000 + 0 3 0 0 0 0 1 1 0 2 5000 + 1 3 0.2 0.2 0.2 0.2 1 1 0 2 5000 + 2 3 0.3 0.3 0.3 0.3 1 1 0 2 5000 - TAC - 10000 */ + void Read_RAssess_output(MSEBoxModel *bm, int species, int year, FILE *llogfp) { - char outname[STRLEN]; - char ch; - FILE *fp; - char *valueStr; - char buffer[STRLEN]; - char seps[] = " ,\t"; - int size = 100; // TODO: Set this to sensible value - int buflen = 200; - double *values = (double *) malloc((size_t)size * sizeof(double)); - char *line_buf = NULL; - size_t line_buf_size = 0; - size_t line_size; - - if(verbose) { - printf("Read_RAssess_output: reading results back in for %s\n", FunctGroupArray[species].groupCode); + char outname[STRLEN]; + FILE *fp; + char buffer[STRLEN]; + + + sprintf(outname, "%s_%s", + FunctGroupArray[species].groupCode, + bm->RAssessRoutName); + + if ((fp = Open_Input_File(bm->destFolder, outname, "rt")) == NULL) { + quit("Cannot open R generated TAC output file %s\n", outname); + } + + /* Read header line */ + if (fgets(buffer, sizeof(buffer), fp) == NULL) { + fprintf(llogfp, + "ERROR-RAssess: Empty R generated TAC output file %s\n", + outname); + fflush(llogfp); + fclose(fp); + quit("Error: empty R generated TAC output file %s\n", outname); + } + + + + /* If header includes "TAC" the TAC values are read in */ + if (strstr(buffer, "TAC") != NULL) { + int fishery_id; + double tac_val; + double total_tac = 0.0; + + fprintf(llogfp, + "RAssess: TAC format detected in %s for species %s\n", + outname, + FunctGroupArray[species].groupCode); + + + while (fgets(buffer, sizeof(buffer), fp) != NULL) { + if (buffer[0] == '\n' || buffer[0] == '\0') { + continue; } - - /** Create filename - was _Rassess.out**/ - sprintf(outname,"%s_%s",FunctGroupArray[species].groupCode, bm->RAssessRoutName); - if ((fp = Open_Input_File(bm->destFolder,outname, "rt")) == NULL) { - quit("Cannot open R generated output file %s\n", outname); + /* Checking format and input of the output file */ + if (sscanf(buffer, "%d%lf", &fishery_id, &tac_val) != 2) { + fprintf(llogfp, + "WARNING-RAssess: Skipping malformed TAC line in %s: %s\n", outname, buffer); + fflush(llogfp); + continue; } - // Get the first line of the file - line_size = getline(&line_buf, &line_buf_size, fp); - /* - if(line_size > 2) { - quit("Error in %s - expected header row not present\n", outname); + if (fishery_id < 0 || fishery_id >= bm->K_num_fisheries) { + fprintf(llogfp, + "WARNING-RAssess: Fishery index %d out of range in %s (valid range 0-%d)\n", + fishery_id, outname, bm->K_num_fisheries - 1); + fflush(llogfp); + continue; } - */ - // Read in data lines - /* Loop for all lines */ - fseek(fp, 0L, 0); - while (fgets(buffer, buflen, fp) != NULL) { - ch = buffer[0]; - - if (ch == '\n') - continue; - - if (strcmp(buffer, "TAC") == 0){ - // Do nothing as header row - } else { - valueStr = strtok(buffer, seps); - if(strlen(valueStr) != 0) { - bm->RBCestimation.RBCspeciesParam[species][RBCest_id] = atof(valueStr); - } - } + if (tac_val < 0.0) { + fprintf(llogfp, + "WARNING-RAssess: Negative TAC value %.3f for species %s, fishery %d in %s\n", + tac_val, + FunctGroupArray[species].groupCode, + fishery_id, + outname); } - fprintf(bm->logFile, "%s RAssessTAC set to %e\n", FunctGroupArray[species].groupCode, bm->RBCestimation.RBCspeciesParam[species][RBCest_id]); - fflush(bm->logFile); + /* Read TAC into array that is used to scale mFC and Effort */ + bm->TACamt[species][fishery_id][now_id] = tac_val; + total_tac += tac_val; - free1d(values); - fclose(fp); - - return; + fprintf(llogfp, + "RAssess: Updated TAC for species %s, fishery %d to %.3f for year %d\n", + FunctGroupArray[species].groupCode, fishery_id, tac_val, year); + } + + /* Store total TAC across fisheries for this species */ + fprintf(llogfp, + "RAssess: %s total TAC across fisheries set to %.3f\n", + FunctGroupArray[species].groupCode, total_tac); + + } else if (strstr(buffer, "Effort") != NULL || strstr(buffer, "effort") != NULL) { + + int b, fishery_id; + double Effort_hdistrib1, Effort_hdistrib2; + double Effort_hdistrib3, Effort_hdistrib4; + double meff1, meff2, meff3, meff4; + double effort; + + fprintf(llogfp, + "RAssess: Effort format detected in %s for species %s\n", + outname, + FunctGroupArray[species].groupCode); + + while (fgets(buffer, sizeof(buffer), fp) != NULL) { + if (buffer[0] == '\n' || buffer[0] == '\0') { + continue; + } + + if (sscanf(buffer, "%d%d%lf%lf%lf%lf%lf%lf%lf%lf%lf", + &b, &fishery_id, + &Effort_hdistrib1, &Effort_hdistrib2, + &Effort_hdistrib3, &Effort_hdistrib4, + &meff1, &meff2, &meff3, &meff4, + &effort) != 11) { + + fprintf(llogfp, + "WARNING-RAssess: Skipping malformed effort line in %s: %s", + outname, buffer); + fflush(llogfp); + continue; + } + + if (b < 0 || b >= bm->nbox) { + fprintf(llogfp, + "WARNING-RAssess: Box index %d out of range in %s " + "(valid range 0-%d)\n", + b, outname, bm->nbox - 1); + fflush(llogfp); + continue; + } + + if (fishery_id < 0 || fishery_id >= bm->K_num_fisheries) { + fprintf(llogfp, + "WARNING-RAssess: Fishery index %d out of range in %s " + "(valid range 0-%d)\n", + fishery_id, outname, bm->K_num_fisheries - 1); + fflush(llogfp); + continue; + } + + bm->Effort_hdistrib[b][fishery_id][0] = Effort_hdistrib1; + bm->Effort_hdistrib[b][fishery_id][1] = Effort_hdistrib2; + bm->Effort_hdistrib[b][fishery_id][2] = Effort_hdistrib3; + bm->Effort_hdistrib[b][fishery_id][3] = Effort_hdistrib4; + + mEff[fishery_id][0] = meff1; + mEff[fishery_id][1] = meff2; + mEff[fishery_id][2] = meff3; + mEff[fishery_id][3] = meff4; + + bm->FISHERYprms[fishery_id][EffortLevel_id] = effort; + + fprintf(llogfp, + "RAssess: Updated effort for box %d, fishery %d: " + "hdistrib for seasons 1-4 = (%.3f %.3f %.3f %.3f) " + "meff for seasons 1-4 = (%.3f %.3f %.3f %.3f) effort = %.3f\n", + b, + fishery_id, + Effort_hdistrib1, + Effort_hdistrib2, + Effort_hdistrib3, + Effort_hdistrib4, + meff1, + meff2, + meff3, + meff4, + effort); + } + } else { + fprintf(llogfp, + "RAssess: No TAC or Effort found in header of %s for species %s. " + "No values were read.\n", + outname, + FunctGroupArray[species].groupCode); + } + + fflush(llogfp); + fclose(fp); + + return; } diff --git a/example/FPS_Rassess_TAC.R b/example/FPS_Rassess_TAC.R new file mode 100644 index 0000000..19743cf --- /dev/null +++ b/example/FPS_Rassess_TAC.R @@ -0,0 +1,16 @@ +setwd("/app/model/output/") +#setwd("M:/Atlantis/Runs/atlantis_v6702_r/test_TAC_FHA_survey_8") +##cat(as.character(Sys.time()), "After setwd:", getwd(), "\n", file = "FDG_Rassess_called.log", append = TRUE) + +infilename <- "FPS_RAssessinput.csv" +outfilename <- "FPS_Rassess.out" +catchdata <- "outputSETASCatch.txt" + + + + +dfTAC <- data.frame(fishery = 0:32, TAC = c(0,0,50,rep(0,30))*1000) +write.table(dfTAC, file = outfilename, row.names = FALSE, quote = FALSE) + +cat("R done\n") + diff --git a/example/VMPA_setas_assess.prm b/example/VMPA_setas_assess.prm new file mode 100644 index 0000000..0df6d31 --- /dev/null +++ b/example/VMPA_setas_assess.prm @@ -0,0 +1,12813 @@ + +# Run parameters +tassessstart 3666666666666660 # Output start day (60) 3666666666666660 +tassessinc 365 # Collect data every x days +teatassessinc 365 # Collect diet information every x number of timesteps (1820) +tClassicalAssessStart 3666666666666660 # Day that formal assessment model use starts (will cause a warning if less than 10 years after tassessstart, still possible, but may cause problems for time series dependent assessments) +flaggen 1 # Whether to generate random numbers (1) or read them in (0) +flagpatchy 0 # Whether want patchy temporal sampling (1) or monitoring at a regular frequency (0) +flagcont 0 # Whether want to have within year continuous sampling (1) or vertebrate surveys only annual (0) even if physical properties collected more frequently +flagareacorrect 1 # Whether to average sampling totals over space and time (1) or just number of sampling trips in the year (0) +minfreq 1 # Minimum frequency of sampling +maxfreq 60 # Maximum frequency of sampling +flagecosysassess 0 # Whether assessing ecosystem as well as specific species +flagobsdata 0 # Whether using on board observers to collect catch information (for size distributions of catch etc) + +nfzones 5 # Number of fishing zones +nsbox_i 4 # Number of sampling boxes (intensive sampling - or only sampling if only one design used) +nsbox_o 1 # Number of sampling boxes (less intensive sampling) + +crit_depth 250 # Depth defining inshore-offshore split + +K_num_tot_assess 1 # Total number of biological groups in the assessment model (juveniles and adults handled separately for vertebrates) +K_num_live 50 # Total number of living groups in the model (flora and fauna) +K_num_detritus 3 # Total number of detritus groups in the model (labile and refractory; water column and sediments) +K_num_eweinvert 16 # Total number of invertebrate groups considered in the network calculations +K_num_charis 6 # Total number of charismatic groups in the model (birds and mammals) +K_num_sampleage 10 # Total number of separate age classes sampled per group by the sampling model +K_num_prod 8 # Total number of invertebrates production info is collected for (including flora) +K_num_eat 28 # Total number of invertebrates consumption info is collected for (including flora) +K_num_invfished 0 # Total number of invertebrate groups impacted by fishing (including flora) + +K_max_agekey 90 # Maximum number of age classes tracked per group in the sampling model's agelengthkey +K_num_stomaches 1000 # Maximum number of stomaches sampled +K_num_size 20 # Maximum number of size classes tracked per group in the sampling model's agelengthkey +K_num_pelbin 35 # Number of bins used in the pelagic biomass size spectra analysis +K_num_sedbin 4 # Number of bins used in the benthic biomass size spectra analysis +K_num_abcbin 35 # Number of bins used in the abundance-biomass curve analysis +K_num_trophbin 5 # Number of bins used in the trophic spectra curve analysis +maxTL 8 # Maxium number of trophic levels considered in Lindeman network analysis + +samplediet 1 # Flag indicating whether sampled diets are output: 0 = no, 1 = yes +ageout 0 # Flag indicating whether sampled age structures are output: 0 = no, 1 = yes + +phys_samplingsize 1 # The number of times each physical sample should be sampled per sampling event (usually set to 1) + +# Zone each box belongs to +zones 11 +1 1 1 1 1 1 1 1 1 1 1 + +# Identity of each of the sampling boxes +sites_intense 4 +1 2 3 4 + +# Identity of each of the less intensive sampling boxes +sites_other 1 +1 + +# Zone each box belongs to (1=inshore, 0 = offshore) +InOffshore 5 +1 0 1 0 1 + + +## RAssess related flags +UsingRAssess 1 +RAssessSpringSurveyDay 300000 +RAssessAutumnSurveyDay 180000 +RAssessFisheryID 0 +RAssessFixedM 1 # Whether using fixed M +RAssessRefYear 1948 + +RAssessRuseScript 1 # Whether using system() call to R (1) or using embedded R calls (0) + +RassessColDelimiter ; + +RAssessRinName RAssessinput.csv # Base name of RAssess input files (functional group names will be appended) +RAssessRoutName Rassess.out # Base name of RAssess output files (functional group names will be appended) + +ss3Name ss3 # Name of the SS3 executable file + +NumRAssessScriptNames 2 # number of RAssess scripts to call – possible to have different ones for different functional groups +RAssessRscriptName0 Rassess_TAC.R +RAssessRscriptName1 Rassess_Effortinc.R + +# Code assumes: PGMSY.R is entry 0 and dynTier4.R is entry 1 + +# If using RAssessRuseScript 1 can only have a single Rscript in play with all the relevant function calls in it + +# Which R assessment script to use for the assessment: +whichRAssess_FPL -1 +whichRAssess_FPO -1 +whichRAssess_FPS 0 +whichRAssess_FPS 0 +whichRAssess_FVD -1 +whichRAssess_FVV -1 +whichRAssess_FVS -1 +whichRAssess_FVB -1 +whichRAssess_FVT -1 +whichRAssess_FVO -1 +whichRAssess_FMM -1 +whichRAssess_FMN -1 +whichRAssess_FBP -1 +whichRAssess_FDD -1 +whichRAssess_FDE -1 +whichRAssess_FDS -1 +whichRAssess_FDM -1 +whichRAssess_FDP -1 +whichRAssess_FDB -1 +whichRAssess_FDC -1 +whichRAssess_FDO -1 +whichRAssess_FDF -1 +whichRAssess_SHB -1 +whichRAssess_SHD -1 +whichRAssess_SHC -1 +whichRAssess_SHP -1 +whichRAssess_SHR -1 +whichRAssess_SSK -1 +whichRAssess_SB -1 +whichRAssess_SP -1 +whichRAssess_PIN -1 +whichRAssess_REP -1 +whichRAssess_WHB -1 +whichRAssess_WHS -1 +whichRAssess_WHT -1 +whichRAssess_WDG -1 +whichRAssess_CEP -1 +whichRAssess_BFS -1 +whichRAssess_BFF -1 +whichRAssess_BFD -1 +whichRAssess_BG -1 +whichRAssess_BMD -1 +whichRAssess_BML -1 +whichRAssess_BMS -1 +whichRAssess_PWN -1 +whichRAssess_ZL -1 +whichRAssess_BD -1 +whichRAssess_MA -1 +whichRAssess_MB -1 +whichRAssess_SG -1 +whichRAssess_BC -1 +whichRAssess_ZG -1 +whichRAssess_PL -1 +whichRAssess_DF -1 +whichRAssess_PS -1 +whichRAssess_ZM -1 +whichRAssess_ZS -1 +whichRAssess_DL -1 +whichRAssess_DR -1 +whichRAssess_DC -1 + +#### Rassess end ####### + +flagphys 2 # Flag for setting error structure used for physical and processes: 0 = uniform, 1 = normal, 2 = lognormal +flaginvpbiom 2 # Flag for setting error structure used for pelagic invertebrate biomass: 0 = uniform, 1 = normal, 2 = lognormal +flagepibiom 2 # Flag for setting error structure used for benthic epifauna invertebrate biomass: 0 = uniform, 1 = normal, 2 = lognormal +flaginfbiom 2 # Flag for setting error structure used for benthic infauna invertebrate biomass: 0 = uniform, 1 = normal, 2 = lognormal +flagdetbiom 2 # Flag for setting error structure used for detritus: 0 = uniform, 1 = normal, 2 = lognormal +flagfishbiom 2 # Flag for setting error structure used for detritus: 0 = uniform, 1 = normal, 2 = lognormal +flagverts 2 # Flag for setting error structure used for vertebrate info: 0 = uniform, 1 = normal, 2 = lognormal +flagprod 2 # Flag for setting error structure used for production: 0 = uniform, 1 = normal, 2 = lognormal +flageat 2 # Flag for setting error structure used for consumption: 0 = uniform, 1 = normal, 2 = lognormal +flagcatch 2 # Flag for setting error structure used for catch: 0 = uniform, 1 = normal, 2 = lognormal +flageffort 2 # Flag for setting error structure used for effort: 0 = uniform, 1 = normal, 2 = lognormal +flagdiscrd 2 # Flag for setting error structure used for discard: 0 = uniform, 1 = normal, 2 = lognormal +flagcount 1 # Flag for setting error structure used for bird counts: 0 = uniform, 1 = normal, 2 = lognormal +flagcurve 4 # Flag for setting error structure used for selectivity curve estimate: 0 = uniform, 1 = normal, 2 = lognormal, 4 = know correct curve +flagprms 1 # Flag for setting error structure used for selectivity curve parameters: 0 = uniform, 1 = normal, 2 = lognormal +flagage 2 # Flag for setting error structure used for aging: 0 = uniform, 1 = normal, 2 = lognormal + +# Biased sample mean as proportion of true mean +k_avgsalt 1.0 # For salinity +k_avgphys 1.0 # For physical properties (light, oxygen) +k_avgnuts 1.0 # For nutrients +k_avgprocs 1.0 # For processes (denitrification, nitrification) and chlorophyll a +k_avgphytl 1.0 # For large phytoplankton +k_avgphyts 1.0 # For small phytoplankton +k_avgzoops 0.5 # For small zooplankton +k_avgzoopl 1.0 # For large zooplankton +k_avgcep 1.0 # For cephalopods +k_avgpbact 0.7 # For pelagic bacteria +k_avgsbact 0.5 # For sediment bacteria +k_avginfs 0.5 # For small infauna (meiobenthos) +k_avginfl 1.0 # For large infauna (deposit feeders and infaunal carnivores) +k_avgepif1 1.0 # For epifauna type 1 (filter feeders and grazers) +k_avgepif2 1.0 # For epifauna type 2 (macrozoobenthos) +k_avgppben 1.0 # For benthic primary producers +k_avgrdet 1.0 # For refractory detritus +k_avgldet 1.0 # For labile detritus +k_avgfish 1.0 # For fish and other vertebrate biomass +k_avgpelpp 1.0 # For pelagic primary production +k_avgzoopp 1.0 # For zooplankton production +k_avgcepp 1.0 # For cephalopod production +k_avgpbactp 1.0 # For pelagic bacterial production +k_avgsbactp 1.0 # For sediment bacterial production +k_avginfsp 1.0 # For small infauna (meiobenthos) production +k_avginflp 1.0 # For large infauna (deposit feeders and infaunal carnivores) production +k_avgepi1p 1.0 # For epifauna type 1(filter feeder) production +k_avgepi2p 1.0 # For epifauna type 2 (grazers and macrozoobenthos) production +k_avgbenpp 1.0 # For benthic primary production +k_avgzoopeat 1.0 # For zooplankton consumption +k_avgcepeat 1.0 # For cephalopod consumption +k_avgpbacteat 1.0 # For pelagic bacterial consumption +k_avgsbacteat 1.0 # For sediment bacterial consumption +k_avginfseat 1.0 # For small infauna (meiobenthos) consumption +k_avginfleat 1.0 # For large infauna (deposit feeders and infaunal carnivores) consumption +k_avgepi1eat 1.0 # For epifauna type 1 (filter feeder) consumption +k_avgepi2eat 1.0 # For epifauna type 2 (grazers and macrozoobenthos) consumption +k_avgweight 1.0 # For vertebrate weights +k_avgprodn 1.0 # For vertebrate production +k_avgeat 1.0 # For vertebrate consumption +k_avgdiscrd 0.7 # For vertebrate discard rates +k_avgcatch 0.8 # For vertebrate total catch +k_avgeffort 0.9 # For vertebrate total effort +k_avgtdiscrd 0.8 # For vertebrate total discards +k_avgcount 1.0 # For counts +k_avgcobs 0.9 # For numbers observed in the catch +k_avgcurve 1.0 # For selectivity curve used +k_avgprms 1.0 # For parameters of selectivity curves +k_avgage 1.0 # For aging + +# Error variance (as proportion of mean) +k_varsalt 0.01 # For salinity +k_varphys 0.25 # For physical properties (light, oxygen) +k_varnuts 0.25 # For nutrients +k_varprocs 0.25 # For processes (denitrification, nitrification) and chlorophyll a +k_varphytl 0.36 # For large phytoplankton +k_varphyts 0.49 # For small phytoplankton +k_varzoops 1.0 # For small zooplankton +k_varzoopl 0.36 # For large zooplankton +k_varcep 0.36 # For cephalopods +k_varpbact 0.49 # For pelagic bacteria +k_varsbact 0.49 # For sediment bacteria +k_varinfs 2.0 # For small infauna (meiobenthos) +k_varinfl 1.5 # For large infauna (deposit feeders and infaunal carnivores) +k_varepif1 0.36 # For epifauna type 1 (filter feeders and grazers) +k_varepif2 0.36 # For epifauna type 2 (macrozoobenthos) +k_varppben 0.36 # For benthic primary producers +k_varrdet 0.36 # For refractory detritus +k_varldet 0.36 # For labile detritus +k_varfish 0.36 # For fish and other vertebrate biomass +k_varpelpp 0.1 # For pelagic primary production +k_varzoopp 0.1 # For zooplankton production +k_varcepp 0.1 # For cephalopod production +k_varpbactp 0.1 # For pelagic bacterial production +k_varsbactp 0.2 # For sediment bacterial production +k_varinfsp 0.2 # For small infauna (meiobenthos) production +k_varinflp 0.2 # For large infauna (deposit feeders and infaunal carnivores) production +k_varepi1p 0.2 # For epifauna type 1 (filter feeder) production +k_varepi2p 0.2 # For epifauna type 2 (grazers and macrozoobenthos) production +k_varbenpp 0.2 # For benthic primary production +k_varzoopeat 0.1 # For zooplankton consumption +k_varcepeat 0.1 # For cephalopod consumption +k_varpbacteat 0.2 # For pelagic bacterial consumption +k_varsbacteat 0.2 # For sediment bacterial consumption +k_varinfseat 0.2 # For small infauna (meiobenthos) consumption +k_varinfleat 0.2 # For large infauna (deposit feeders and infaunal carnivores) consumption +k_varepi1eat 0.2 # For epifauna type 1 (filter feeder) consumption +k_varepi2eat 0.2 # For epifauna type 2 (grazers and macrozoobenthos) consumption +k_varweight 0.001 # For vertebrate weights +k_varprodn 0.36 # For vertebrate production +k_vareat 0.36 # For vertebrate consumption +k_vardiscrd 0.25 # For vertebrate discards +k_varcatch 0.25 # For vertebrate total catch +k_vareffort 0.1 # For vertebrate total effort +k_vartdiscrd 0.36 # For vertebrate total discards +k_varcount 0.25 # For counts +k_varcobs 0.1 # For numbers observed in the catch +k_varcurve 1.0 # For selectivity curve used +k_varprms 0.3 # For parameters of selectivity curves +k_varage 1.0 # For aging + +## Vertebrate parameters (there must be as many entries in these vectors as given by nvert) +# Assumes following order +# FPL FPO FPS FVD FVV FVS FVB FVT FVO FMM FMN FBP FDD FDE FDS FDM FDP FDB FDC FDO +# FDF SHB SHD SHC SHP SHR SSK SB SP PIN REP WHB WHS WHT WDG + +# Sample sizes for catch sub-sampling +samplesize 62 +30000 30000 30000 30000 30000 30000 500 30000 30000 200 30000 100 100 30000 30000 30000 30000 30000 30000 30000 30000 30000 500 100 100 100 10 100 100 50 20 100 50 30000 50 50 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + +# Coefficient of allometic length-weight relation - zeroed out for non surveyed groups +li_a 62 +1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 0.0375 1.2 1.2 1.2 1.2 1.2 1.2 0.00263 1.2 0.0048 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 + +# Exponent in allometic length-weight relation +li_b 62 +1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 2.3545 1.2 1.2 1.2 1.2 1.2 1.2 3.28302 1.2 3.0797 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 + +# Size (cm) of the size (length) bins +li_bin 62 +5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 + +# Size (cm) of smallest size bin +li_start 62 +5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 + +# Maxium length of each harvested group (cm) - vertebrates and invertebrates +# Vertebrates in same order as given in sp_id in datareading.c and +# and invertebrates in order of +# FPL FPO FPS FVD FVV FVS FVB FVT FVO FMM FMN FBP FDD FDE FDS FDM FDP FDB +# FDC FDO FDF SHB SHD SHC SHP SHR SSK PIN WDG REP SB SP WHB WHS WHT CEP PWN +# BG BFS BFF BFD BMS BMD BML ZL BD MA ZG MB SG BC +li_max 62 +20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 + +## Fishing selectivity information for each fishery +# There must be as many entries in q_lsm, q_sigma and selcurve as given by the value of nvert ES: probably n fisheries + +q_lsm 33 +0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 + +q_sigma 33 +0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 + +# Note that: +# selcurve == 0 means use constant selectivity +# selcurve == 1 means use logistic selectivity +# selcurve == 2 means use normal selectivity +# selcurve == 3 means use lognormal selectivity +# selcurve == 4 means use gamma selectivity +selcurve 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + +avail_FPL 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FPO 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FPS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FVD 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FVV 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FVS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FVB 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FVT 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FVO 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FMM 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FMN 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FBP 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FDD 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FDE 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FDS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FDM 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FDP 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FDB 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FDC 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FDO 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_FDF 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_SHB 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_SHD 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_SHC 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_SHP 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_SHR 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_SSK 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_SB 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_SP 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_PIN 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_REP 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_WHB 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_WHS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_WHT 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_WDG 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_CEP 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_BFS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_BFF 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_BFD 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_BG 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_BMD 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_BML 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_BMS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_PWN 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_ZL 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_BD 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_MA 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_MB 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_SG 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_BC 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_ZG 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_PL 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_DF 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_PS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_ZM 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_ZS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_DL 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_DR 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +avail_DC 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Vector identifying each group as a consumer (1) or non-consumer (0) +CONid 62 +1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 + +# Flag indicating whether or not the vertebrate is a planktivore +# Assumes following order +# FDW FDG FPL FPO FPS FVD FVV FVS FVB FVT FVO FMM FMN FBP FDD FDE FDS FDM FDP FDB FDC FDO FDF +# SHB SHD SHC SHP SHR SSK PIN WDG REP SB SP WHB WHS WHT +EatsPlanktonid 62 +0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + +# Detritus inputs to each zone +input_DLwc 5 +0 0 0 0 0 + +input_DRwc 5 +0 0 0 0 0 + +input_DLsed 5 +0 0 0 0 0 + +input_DRsed 5 +0 0 0 0 0 + +# Proportion of discards flowing to each of the detritus pools +Discard_Fate_DL 2 +0.0 0.2 +Discard_Fate_DC 2 +0.0 0.3 +Discard_Fate_DR 2 +0.0 0.5 + +# PBR parameter for each vertebrate and cephalopods +# FDW FDG FPL FPO FPS FVD FVV FVS FVB FVT FVO FMM FMN FBP FDD FDE FDS FDM FDP FDB FDC FDO FDF +# SHB SHD SHC SHP SHR SSK PIN WDG REP SB SP WHB WHS WHT CEP +R_max 62 +0.6 0.6 0.6 0.6 0.6 0.4 0.4 0.4 0.4 0.4 0.4 0.6 0.6 0.6 0.4 0.45 0.45 0.4 0.4 0.45 0.4 0.35 0.4 0.35 0.35 0.35 0.35 0.35 0.35 0.07 0.07 0.07 0.15 0.15 0.07 0.07 0.07 0.8 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 + +# avgerage invertebrate length (mm) +# PL DF PS ZS ZM ZL ZG CEP PWN PB BB BO BD BC BFS BFF BFD BG BMS BML BMD MA SG MB +avg_inv_size 62 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.000000e+03 6.000000e+01 6.000000e+01 6.000000e+01 1.500000e+02 3.000000e+02 4.000000e+02 2.500000e+02 1.000000e+03 1.000000e-01 5.000000e+01 6.000000e+03 1.000000e-10 4.000000e+02 1.000000e+01 1.000000e+01 1.000000e-10 1.000000e-11 1.000000e-12 1.000000e-03 1.000000e-06 1.000000e-12 1.000000e-12 1.000000e-01 0 + +## Assessment parameters +Assess_Tol 1.0 # Fractional convergence tolerance of minimisation +Assess_Btol 0.105 # Acceptable proportional buffer on convergence +Assess_Max_Int 2000 # Maxiumum number of iterations of Amoeba + +AssessNyr 20 # Length of longrun projections in Fref estimation + +## Remember to turn on (i.e. 1) later on for NEUS +# Assessment parameter set-up for fished groups +# no_assess 0 +# schafer_model 1 (surplus production) +# VPA_model 2 +# MSVPA_model 3 +# CAB_model (or potentially SS2) 4 +# CAB_mimic 5 +# qlinear_regress 6 +# CPUE_linear_regress 7 +# SS3 11 +# FDW FDG FPL FPO FPS FVD FVV FVS FVB FVT FVO FMM FMN FBP FDD FDE FDS FDM FDP FDB FDC FDO FDF SHB +# SHD SHC SHP SHR SSK PIN WDG REP SB SP WHB WHS WHT CEP PWN BG BFS BFF BFD BMS BMD BML ZL +flag_assess 62 +0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + + +# Datastream to be used 0 = commercial, 1 = survey +assess_datastream 62 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + +assess_bootstrap 62 +1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 0 0 0 0 0 0 0 0 0 0 0 0 + +assess_nat_mort 62 +0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0.15 0 0 0 0 0 0 0 0 0 0 0 0 0 + +# Which version of production model to use: +# 0: Constant q and p +# 1: Constant q, assymetric p +# 2: Changing q, constant p +# 3: Changing q, assymetric p + +flag_prod_model 62 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + +top_pcnt 62 +80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 80 0 0 0 0 0 0 0 0 0 0 0 0 0 + +bot_pcnt 62 +20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 0 0 0 0 0 0 0 0 0 0 0 0 0 + + +assess_nf_FPL 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FPO 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FPS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FVD 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FVV 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FVS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FVB 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FVT 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FVO 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FMM 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FMN 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FBP 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FDD 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FDE 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FDS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FDM 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FDP 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FDB 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FDC 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FDO 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_FDF 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_SHB 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_SHD 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_SHC 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_SHP 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_SHR 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_SSK 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_SB 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_SP 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_PIN 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_REP 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_WHB 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_WHS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_WHT 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_WDG 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_CEP 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_BFS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_BFF 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_BFD 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_BG 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_BMD 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_BML 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_BMS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_PWN 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_ZL 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_BD 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_MA 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_MB 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_SG 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_BC 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_ZG 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_PL 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_DF 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_PS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_ZM 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_ZS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_DL 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_DR 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +assess_nf_DC 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +## Tiered assessment parameters +assess_share_params 1 # Whether all stocks assessed for an individual species share same parameters (1) or not (0) + +Num_Sexes 1 # Number of sexes +HistYrMin 1 # First historical year (relative to start of run) +HistYrMax 7 # Last historical year (relative to start of run) - should this be dynamically set in model? +OverallMaxAge 100 # Max age across all species - set this to the max of MaxAge below or cohorts * ageclasssize (which ever is larger) + +# Seeds for the analysis +Iseedz 0 # Seeds for operating model selectivity +Iseedx 0 # Seeds for sigmaR +Iseedy 0 # Seeds for fake tier1 + +useGenMnomial 0 # How generate length-age data +CPUElim 0.4 # CPUE limit reference point as a proportion of target reference point +num_avg_year 5.0 # Number of years to do the averaging over + +## General SS flags +UseSS 0 # Whether to link with Stock-Synthesis (SS) assessment program - 1 = yes, 0 = perfect knowledge style +AssessDelay 2 # Length of delay in the assessment process (years from data collection to RBC setting) +SSForecastType 2 # SS Forecast type - 0=none; 1=F(SPR); 2=F(MSY) 3=F(Btgt); 4=Ave F (uses first-last relF yrs); 5=input annual F scalar +SSFscalar 0.2 # SS F scalar (only used for Do_Forecast==5) +SSControlRule 2 # Control rule method (1=catch=f(SSB) west coast; 2=F=f(SSB) */ +SSControlRuleB 0.25 # Control rule Biomass level for constant F (as frac of Bzero, e.g. 0.40); (Must be > the no F level below) +SSControlRuleTargF 1.0 # Control rule target as fraction of Flimit +SSLoop 2 # Number of forecast loops (1=OFL only; 2=ABC; 3=get F from forecast ABC catch with allocations applied) +SSLoopWithRandRec 2 # First forecast loop with stochastic recruitment +SSTol 0.0001 # SS convergence tolerance - final convergence criteria (e.g. 1.0e-04) +SSDepletionBasis 1 # SS Depletion basis: denom is: 0=skip; 1=rel X*B0; 2=rel X*Bmsy; 3=rel X*B_styr +SSFractX 1.0 # Fraction (X) for Depletion denominator (e.g. 0.4) -- NB: Neil had 0.41 +SS_SPRreport 4 # SS SPR reporting flag - (1-SPR)_reporting: 0=skip; 1=rel(1-SPR); 2=rel(1-SPR_MSY); 3=rel(1-SPR_Btarget); 4=notrel +SS_Freport 1 # SS F reporting flag - F_std reporting: 0=skip; 1=exploit(Bio); 2=exploit(Num); 3=sum(frates) +SSFreportBasis 0 # SS F reporting basis - F_report_basis: 0=raw; 1=rel Fspr; 2=rel Fmsy ; 3=rel Fbtgt +SSnoBiasAdj 0 # SS last year of no bias adjustment - relative to model start (last_early_yr_nobias_adj_in_MPD) +SSnumGrowthPatterns 1 # SS number of growth patterns - minimum of 1 + + +UseAtlantisPGMSY 0 # Whether to use Atlantis coded version of PGMSY ##JMK +ProjYr 30 # Length of PGMSY projection ##JMK +ThresholdDepletion 0.2 # Threshold depletion for PGMSY ##JMK +ThresholdBound 0.02 # Bound for depletion convergence for PGMSY ##JMK +MaxIteration 1000 # Maximum number of PGMSY iterations ##JMK + +ss3_Exe_Name + +AssessStart_FPL 0 +AssessStart_FPO 0 +AssessStart_FPS 0 +AssessStart_FVD 0 +AssessStart_FVV 0 +AssessStart_FVS 0 +AssessStart_FVB 0 +AssessStart_FVT 0 +AssessStart_FVO 0 +AssessStart_FMM 0 +AssessStart_FMN 0 +AssessStart_FBP 8 +AssessStart_FDD 0 +AssessStart_FDE 0 +AssessStart_FDS 0 +AssessStart_FDM 0 +AssessStart_FDP 0 +AssessStart_FDB 0 +AssessStart_FDC 8 +AssessStart_FDO 0 +AssessStart_FDF 8 +AssessStart_SHB 0 +AssessStart_SHD 0 +AssessStart_SHC 0 +AssessStart_SHP 0 +AssessStart_SHR 0 +AssessStart_SSK 0 +AssessStart_SB 8 +AssessStart_SP 0 +AssessStart_PIN 8 +AssessStart_REP 0 +AssessStart_WHB 8 +AssessStart_WHS 0 +AssessStart_WHT 8 +AssessStart_WDG 0 +AssessStart_CEP 8 +AssessStart_BFS 0 +AssessStart_BFF 8 +AssessStart_BFD 0 +AssessStart_BG 8 +AssessStart_BMD 0 +AssessStart_BML 8 +AssessStart_BMS 0 +AssessStart_PWN 8 +AssessStart_ZL 8 +AssessStart_BD 8 +AssessStart_MA 8 +AssessStart_MB 8 +AssessStart_SG 8 +AssessStart_BC 8 +AssessStart_ZG 8 +AssessStart_PL 0 +AssessStart_DF 0 +AssessStart_PS 0 +AssessStart_ZM 8 +AssessStart_ZS 8 +AssessStart_DL 0 +AssessStart_DR 0 +AssessStart_DC 0 + + + +NumRegions_FPL 0 +NumRegions_FPO 0 +NumRegions_FPS 0 +NumRegions_FVD 0 +NumRegions_FVV 0 +NumRegions_FVS 0 +NumRegions_FVB 0 +NumRegions_FVT 0 +NumRegions_FVO 0 +NumRegions_FMM 0 +NumRegions_FMN 0 +NumRegions_FBP 1 +NumRegions_FDD 0 +NumRegions_FDE 0 +NumRegions_FDS 0 +NumRegions_FDM 0 +NumRegions_FDP 0 +NumRegions_FDB 0 +NumRegions_FDC 1 +NumRegions_FDO 0 +NumRegions_FDF 1 +NumRegions_SHB 0 +NumRegions_SHD 0 +NumRegions_SHC 0 +NumRegions_SHP 0 +NumRegions_SHR 0 +NumRegions_SSK 0 +NumRegions_SB 1 +NumRegions_SP 0 +NumRegions_PIN 1 +NumRegions_REP 0 +NumRegions_WHB 1 +NumRegions_WHS 0 +NumRegions_WHT 1 +NumRegions_WDG 0 +NumRegions_CEP 1 +NumRegions_BFS 0 +NumRegions_BFF 1 +NumRegions_BFD 0 +NumRegions_BG 1 +NumRegions_BMD 0 +NumRegions_BML 1 +NumRegions_BMS 0 +NumRegions_PWN 1 +NumRegions_ZL 1 +NumRegions_BD 1 +NumRegions_MA 1 +NumRegions_MB 1 +NumRegions_SG 1 +NumRegions_BC 1 +NumRegions_ZG 1 +NumRegions_PL 0 +NumRegions_DF 0 +NumRegions_PS 0 +NumRegions_ZM 1 +NumRegions_ZS 1 +NumRegions_DL 0 +NumRegions_DR 0 +NumRegions_DC 0 + + +Nsexes_FPL 0 +Nsexes_FPO 0 +Nsexes_FPS 0 +Nsexes_FVD 0 +Nsexes_FVV 0 +Nsexes_FVS 0 +Nsexes_FVB 0 +Nsexes_FVT 0 +Nsexes_FVO 0 +Nsexes_FMM 0 +Nsexes_FMN 0 +Nsexes_FBP 1 +Nsexes_FDD 0 +Nsexes_FDE 0 +Nsexes_FDS 0 +Nsexes_FDM 0 +Nsexes_FDP 0 +Nsexes_FDB 0 +Nsexes_FDC 1 +Nsexes_FDO 0 +Nsexes_FDF 1 +Nsexes_SHB 0 +Nsexes_SHD 0 +Nsexes_SHC 0 +Nsexes_SHP 0 +Nsexes_SHR 0 +Nsexes_SSK 0 +Nsexes_SB 1 +Nsexes_SP 0 +Nsexes_PIN 1 +Nsexes_REP 0 +Nsexes_WHB 1 +Nsexes_WHS 0 +Nsexes_WHT 1 +Nsexes_WDG 0 +Nsexes_CEP 1 +Nsexes_BFS 0 +Nsexes_BFF 1 +Nsexes_BFD 0 +Nsexes_BG 1 +Nsexes_BMD 0 +Nsexes_BML 1 +Nsexes_BMS 0 +Nsexes_PWN 1 +Nsexes_ZL 1 +Nsexes_BD 1 +Nsexes_MA 1 +Nsexes_MB 1 +Nsexes_SG 1 +Nsexes_BC 1 +Nsexes_ZG 1 +Nsexes_PL 0 +Nsexes_DF 0 +Nsexes_PS 0 +Nsexes_ZM 1 +Nsexes_ZS 1 +Nsexes_DL 0 +Nsexes_DR 0 +Nsexes_DC 0 + +## Tier Buffer Settings +UseTierBuffers 0 + +# Tier 1 scalar (to take OFL/RBC to ABC/AFL/TAC) - 1 - discount rate for that tier +Tier1Sig_FPL 0 +Tier1Sig_FPO 0 +Tier1Sig_FPS 0 +Tier1Sig_FVD 0 +Tier1Sig_FVV 0 +Tier1Sig_FVS 0 +Tier1Sig_FVB 0 +Tier1Sig_FVT 0 +Tier1Sig_FVO 0 +Tier1Sig_FMM 0 +Tier1Sig_FMN 0 +Tier1Sig_FBP 1 +Tier1Sig_FDD 0 +Tier1Sig_FDE 0 +Tier1Sig_FDS 0 +Tier1Sig_FDM 0 +Tier1Sig_FDP 0 +Tier1Sig_FDB 0 +Tier1Sig_FDC 1 +Tier1Sig_FDO 0 +Tier1Sig_FDF 1 +Tier1Sig_SHB 0 +Tier1Sig_SHD 0 +Tier1Sig_SHC 0 +Tier1Sig_SHP 0 +Tier1Sig_SHR 0 +Tier1Sig_SSK 0 +Tier1Sig_SB 1 +Tier1Sig_SP 0 +Tier1Sig_PIN 1 +Tier1Sig_REP 0 +Tier1Sig_WHB 1 +Tier1Sig_WHS 0 +Tier1Sig_WHT 1 +Tier1Sig_WDG 0 +Tier1Sig_CEP 1 +Tier1Sig_BFS 0 +Tier1Sig_BFF 1 +Tier1Sig_BFD 0 +Tier1Sig_BG 1 +Tier1Sig_BMD 0 +Tier1Sig_BML 1 +Tier1Sig_BMS 0 +Tier1Sig_PWN 1 +Tier1Sig_ZL 1 +Tier1Sig_BD 1 +Tier1Sig_MA 1 +Tier1Sig_MB 1 +Tier1Sig_SG 1 +Tier1Sig_BC 1 +Tier1Sig_ZG 1 +Tier1Sig_PL 0 +Tier1Sig_DF 0 +Tier1Sig_PS 0 +Tier1Sig_ZM 1 +Tier1Sig_ZS 1 +Tier1Sig_DL 0 +Tier1Sig_DR 0 +Tier1Sig_DC 0 + +# Tier 2 scalar (to take OFL/RBC to ABC/AFL/TAC) +Tier2Sig_FPL 0 +Tier2Sig_FPO 0 +Tier2Sig_FPS 0 +Tier2Sig_FVD 0 +Tier2Sig_FVV 0 +Tier2Sig_FVS 0 +Tier2Sig_FVB 0 +Tier2Sig_FVT 0 +Tier2Sig_FVO 0 +Tier2Sig_FMM 0 +Tier2Sig_FMN 0 +Tier2Sig_FBP 1 +Tier2Sig_FDD 0 +Tier2Sig_FDE 0 +Tier2Sig_FDS 0 +Tier2Sig_FDM 0 +Tier2Sig_FDP 0 +Tier2Sig_FDB 0 +Tier2Sig_FDC 1 +Tier2Sig_FDO 0 +Tier2Sig_FDF 1 +Tier2Sig_SHB 0 +Tier2Sig_SHD 0 +Tier2Sig_SHC 0 +Tier2Sig_SHP 0 +Tier2Sig_SHR 0 +Tier2Sig_SSK 0 +Tier2Sig_SB 1 +Tier2Sig_SP 0 +Tier2Sig_PIN 1 +Tier2Sig_REP 0 +Tier2Sig_WHB 1 +Tier2Sig_WHS 0 +Tier2Sig_WHT 1 +Tier2Sig_WDG 0 +Tier2Sig_CEP 1 +Tier2Sig_BFS 0 +Tier2Sig_BFF 1 +Tier2Sig_BFD 0 +Tier2Sig_BG 1 +Tier2Sig_BMD 0 +Tier2Sig_BML 1 +Tier2Sig_BMS 0 +Tier2Sig_PWN 1 +Tier2Sig_ZL 1 +Tier2Sig_BD 1 +Tier2Sig_MA 1 +Tier2Sig_MB 1 +Tier2Sig_SG 1 +Tier2Sig_BC 1 +Tier2Sig_ZG 1 +Tier2Sig_PL 0 +Tier2Sig_DF 0 +Tier2Sig_PS 0 +Tier2Sig_ZM 1 +Tier2Sig_ZS 1 +Tier2Sig_DL 0 +Tier2Sig_DR 0 +Tier2Sig_DC 0 + +# Tier 3 scalar (to take OFL/RBC to ABC/AFL/TAC) +Tier3Sig_FPL 0 +Tier3Sig_FPO 0 +Tier3Sig_FPS 0 +Tier3Sig_FVD 0 +Tier3Sig_FVV 0 +Tier3Sig_FVS 0 +Tier3Sig_FVB 0 +Tier3Sig_FVT 0 +Tier3Sig_FVO 0 +Tier3Sig_FMM 0 +Tier3Sig_FMN 0 +Tier3Sig_FBP 1 +Tier3Sig_FDD 0 +Tier3Sig_FDE 0 +Tier3Sig_FDS 0 +Tier3Sig_FDM 0 +Tier3Sig_FDP 0 +Tier3Sig_FDB 0 +Tier3Sig_FDC 1 +Tier3Sig_FDO 0 +Tier3Sig_FDF 1 +Tier3Sig_SHB 0 +Tier3Sig_SHD 0 +Tier3Sig_SHC 0 +Tier3Sig_SHP 0 +Tier3Sig_SHR 0 +Tier3Sig_SSK 0 +Tier3Sig_SB 1 +Tier3Sig_SP 0 +Tier3Sig_PIN 1 +Tier3Sig_REP 0 +Tier3Sig_WHB 1 +Tier3Sig_WHS 0 +Tier3Sig_WHT 1 +Tier3Sig_WDG 0 +Tier3Sig_CEP 1 +Tier3Sig_BFS 0 +Tier3Sig_BFF 1 +Tier3Sig_BFD 0 +Tier3Sig_BG 1 +Tier3Sig_BMD 0 +Tier3Sig_BML 1 +Tier3Sig_BMS 0 +Tier3Sig_PWN 1 +Tier3Sig_ZL 1 +Tier3Sig_BD 1 +Tier3Sig_MA 1 +Tier3Sig_MB 1 +Tier3Sig_SG 1 +Tier3Sig_BC 1 +Tier3Sig_ZG 1 +Tier3Sig_PL 0 +Tier3Sig_DF 0 +Tier3Sig_PS 0 +Tier3Sig_ZM 1 +Tier3Sig_ZS 1 +Tier3Sig_DL 0 +Tier3Sig_DR 0 +Tier3Sig_DC 0 + + +## MYTAC related parameters +myTACbuffer 0.95 +myTACperiod 0 # 0 if not active + + +## Multispecies assessment parameters +MULTISPestNspecies 0 +MULTISPestRBCaverage 1.0 +Nmetiers 1 +MaxCritConvergeValue 0.001 +ConvergeThresh 0.001 + +sexratio_cv 1 + +# Length sub-sample size for the assessment +LFSSlim_FPL 0 +LFSSlim_FPO 0 +LFSSlim_FPS 0 +LFSSlim_FVD 0 +LFSSlim_FVV 0 +LFSSlim_FVS 0 +LFSSlim_FVB 0 +LFSSlim_FVT 0 +LFSSlim_FVO 0 +LFSSlim_FMM 0 +LFSSlim_FMN 0 +LFSSlim_FBP 0 +LFSSlim_FDD 0 +LFSSlim_FDE 0 +LFSSlim_FDS 0 +LFSSlim_FDM 0 +LFSSlim_FDP 0 +LFSSlim_FDB 0 +LFSSlim_FDC 0 +LFSSlim_FDO 0 +LFSSlim_FDF 0 +LFSSlim_SHB 0 +LFSSlim_SHD 0 +LFSSlim_SHC 0 +LFSSlim_SHP 0 +LFSSlim_SHR 0 +LFSSlim_SSK 0 +LFSSlim_SB 0 +LFSSlim_SP 0 +LFSSlim_PIN 0 +LFSSlim_REP 0 +LFSSlim_WHB 0 +LFSSlim_WHS 0 +LFSSlim_WHT 0 +LFSSlim_WDG 0 +LFSSlim_CEP 0 +LFSSlim_BFS 0 +LFSSlim_BFF 0 +LFSSlim_BFD 0 +LFSSlim_BG 0 +LFSSlim_BMD 0 +LFSSlim_BML 0 +LFSSlim_BMS 0 +LFSSlim_PWN 0 +LFSSlim_ZL 0 +LFSSlim_BD 0 +LFSSlim_MA 0 +LFSSlim_MB 0 +LFSSlim_SG 0 +LFSSlim_BC 0 +LFSSlim_ZG 0 +LFSSlim_PL 0 +LFSSlim_DF 0 +LFSSlim_PS 0 +LFSSlim_ZM 0 +LFSSlim_ZS 0 +LFSSlim_DL 0 +LFSSlim_DR 0 +LFSSlim_DC 0 + +# Age sub-sample size for the assessment +AFSSlim_FPL 0 +AFSSlim_FPO 0 +AFSSlim_FPS 0 +AFSSlim_FVD 0 +AFSSlim_FVV 0 +AFSSlim_FVS 0 +AFSSlim_FVB 0 +AFSSlim_FVT 0 +AFSSlim_FVO 0 +AFSSlim_FMM 0 +AFSSlim_FMN 0 +AFSSlim_FBP 0 +AFSSlim_FDD 0 +AFSSlim_FDE 0 +AFSSlim_FDS 0 +AFSSlim_FDM 0 +AFSSlim_FDP 0 +AFSSlim_FDB 0 +AFSSlim_FDC 0 +AFSSlim_FDO 0 +AFSSlim_FDF 0 +AFSSlim_SHB 0 +AFSSlim_SHD 0 +AFSSlim_SHC 0 +AFSSlim_SHP 0 +AFSSlim_SHR 0 +AFSSlim_SSK 0 +AFSSlim_SB 0 +AFSSlim_SP 0 +AFSSlim_PIN 0 +AFSSlim_REP 0 +AFSSlim_WHB 0 +AFSSlim_WHS 0 +AFSSlim_WHT 0 +AFSSlim_WDG 0 +AFSSlim_CEP 0 +AFSSlim_BFS 0 +AFSSlim_BFF 0 +AFSSlim_BFD 0 +AFSSlim_BG 0 +AFSSlim_BMD 0 +AFSSlim_BML 0 +AFSSlim_BMS 0 +AFSSlim_PWN 0 +AFSSlim_ZL 0 +AFSSlim_BD 0 +AFSSlim_MA 0 +AFSSlim_MB 0 +AFSSlim_SG 0 +AFSSlim_BC 0 +AFSSlim_ZG 0 +AFSSlim_PL 0 +AFSSlim_DF 0 +AFSSlim_PS 0 +AFSSlim_ZM 0 +AFSSlim_ZS 0 +AFSSlim_DL 0 +AFSSlim_DR 0 +AFSSlim_DC 0 + +# Number of surveys in assessment +NumSurvey_FPL 0 +NumSurvey_FPO 0 +NumSurvey_FPS 0 +NumSurvey_FVD 0 +NumSurvey_FVV 0 +NumSurvey_FVS 0 +NumSurvey_FVB 0 +NumSurvey_FVT 0 +NumSurvey_FVO 0 +NumSurvey_FMM 0 +NumSurvey_FMN 0 +NumSurvey_FBP 0 +NumSurvey_FDD 0 +NumSurvey_FDE 0 +NumSurvey_FDS 0 +NumSurvey_FDM 0 +NumSurvey_FDP 0 +NumSurvey_FDB 0 +NumSurvey_FDC 0 +NumSurvey_FDO 0 +NumSurvey_FDF 0 +NumSurvey_SHB 0 +NumSurvey_SHD 0 +NumSurvey_SHC 0 +NumSurvey_SHP 0 +NumSurvey_SHR 0 +NumSurvey_SSK 0 +NumSurvey_SB 0 +NumSurvey_SP 0 +NumSurvey_PIN 0 +NumSurvey_REP 0 +NumSurvey_WHB 0 +NumSurvey_WHS 0 +NumSurvey_WHT 0 +NumSurvey_WDG 0 +NumSurvey_CEP 0 +NumSurvey_BFS 0 +NumSurvey_BFF 0 +NumSurvey_BFD 0 +NumSurvey_BG 0 +NumSurvey_BMD 0 +NumSurvey_BML 0 +NumSurvey_BMS 0 +NumSurvey_PWN 0 +NumSurvey_ZL 0 +NumSurvey_BD 0 +NumSurvey_MA 0 +NumSurvey_MB 0 +NumSurvey_SG 0 +NumSurvey_BC 0 +NumSurvey_ZG 0 +NumSurvey_PL 0 +NumSurvey_DF 0 +NumSurvey_PS 0 +NumSurvey_ZM 0 +NumSurvey_ZS 0 +NumSurvey_DL 0 +NumSurvey_DR 0 +NumSurvey_DC 0 + +# Number of blocks in the assessment +NblockPattern_FPL 0 +NblockPattern_FPO 0 +NblockPattern_FPS 0 +NblockPattern_FVD 0 +NblockPattern_FVV 0 +NblockPattern_FVS 0 +NblockPattern_FVB 0 +NblockPattern_FVT 0 +NblockPattern_FVO 0 +NblockPattern_FMM 0 +NblockPattern_FMN 0 +NblockPattern_FBP 0 +NblockPattern_FDD 0 +NblockPattern_FDE 0 +NblockPattern_FDS 0 +NblockPattern_FDM 0 +NblockPattern_FDP 0 +NblockPattern_FDB 0 +NblockPattern_FDC 0 +NblockPattern_FDO 0 +NblockPattern_FDF 0 +NblockPattern_SHB 0 +NblockPattern_SHD 0 +NblockPattern_SHC 0 +NblockPattern_SHP 0 +NblockPattern_SHR 0 +NblockPattern_SSK 0 +NblockPattern_SB 0 +NblockPattern_SP 0 +NblockPattern_PIN 0 +NblockPattern_REP 0 +NblockPattern_WHB 0 +NblockPattern_WHS 0 +NblockPattern_WHT 0 +NblockPattern_WDG 0 +NblockPattern_CEP 0 +NblockPattern_BFS 0 +NblockPattern_BFF 0 +NblockPattern_BFD 0 +NblockPattern_BG 0 +NblockPattern_BMD 0 +NblockPattern_BML 0 +NblockPattern_BMS 0 +NblockPattern_PWN 0 +NblockPattern_ZL 0 +NblockPattern_BD 0 +NblockPattern_MA 0 +NblockPattern_MB 0 +NblockPattern_SG 0 +NblockPattern_BC 0 +NblockPattern_ZG 0 +NblockPattern_PL 0 +NblockPattern_DF 0 +NblockPattern_PS 0 +NblockPattern_ZM 0 +NblockPattern_ZS 0 +NblockPattern_DL 0 +NblockPattern_DR 0 +NblockPattern_DC 0 + +# Block defining regime shift +SRBlock_FPL 0 +SRBlock_FPO 0 +SRBlock_FPS 0 +SRBlock_FVD 0 +SRBlock_FVV 0 +SRBlock_FVS 0 +SRBlock_FVB 0 +SRBlock_FVT 0 +SRBlock_FVO 0 +SRBlock_FMM 0 +SRBlock_FMN 0 +SRBlock_FBP 0 +SRBlock_FDD 0 +SRBlock_FDE 0 +SRBlock_FDS 0 +SRBlock_FDM 0 +SRBlock_FDP 0 +SRBlock_FDB 0 +SRBlock_FDC 0 +SRBlock_FDO 0 +SRBlock_FDF 0 +SRBlock_SHB 0 +SRBlock_SHD 0 +SRBlock_SHC 0 +SRBlock_SHP 0 +SRBlock_SHR 0 +SRBlock_SSK 0 +SRBlock_SB 0 +SRBlock_SP 0 +SRBlock_PIN 0 +SRBlock_REP 0 +SRBlock_WHB 0 +SRBlock_WHS 0 +SRBlock_WHT 0 +SRBlock_WDG 0 +SRBlock_CEP 0 +SRBlock_BFS 0 +SRBlock_BFF 0 +SRBlock_BFD 0 +SRBlock_BG 0 +SRBlock_BMD 0 +SRBlock_BML 0 +SRBlock_BMS 0 +SRBlock_PWN 0 +SRBlock_ZL 0 +SRBlock_BD 0 +SRBlock_MA 0 +SRBlock_MB 0 +SRBlock_SG 0 +SRBlock_BC 0 +SRBlock_ZG 0 +SRBlock_PL 0 +SRBlock_DF 0 +SRBlock_PS 0 +SRBlock_ZM 0 +SRBlock_ZS 0 +SRBlock_DL 0 +SRBlock_DR 0 +SRBlock_DC 0 + + +# Year where recruitment deviation kicks in within the assessment - maybe drop and just use RecDevMinYr +assRecDevMinYear_FPL 0 +assRecDevMinYear_FPO 0 +assRecDevMinYear_FPS 0 +assRecDevMinYear_FVD 0 +assRecDevMinYear_FVV 0 +assRecDevMinYear_FVS 0 +assRecDevMinYear_FVB 0 +assRecDevMinYear_FVT 0 +assRecDevMinYear_FVO 0 +assRecDevMinYear_FMM 0 +assRecDevMinYear_FMN 0 +assRecDevMinYear_FBP 0 +assRecDevMinYear_FDD 0 +assRecDevMinYear_FDE 0 +assRecDevMinYear_FDS 0 +assRecDevMinYear_FDM 0 +assRecDevMinYear_FDP 0 +assRecDevMinYear_FDB 0 +assRecDevMinYear_FDC 0 +assRecDevMinYear_FDO 0 +assRecDevMinYear_FDF 0 +assRecDevMinYear_SHB 0 +assRecDevMinYear_SHD 0 +assRecDevMinYear_SHC 0 +assRecDevMinYear_SHP 0 +assRecDevMinYear_SHR 0 +assRecDevMinYear_SSK 0 +assRecDevMinYear_SB 0 +assRecDevMinYear_SP 0 +assRecDevMinYear_PIN 0 +assRecDevMinYear_REP 0 +assRecDevMinYear_WHB 0 +assRecDevMinYear_WHS 0 +assRecDevMinYear_WHT 0 +assRecDevMinYear_WDG 0 +assRecDevMinYear_CEP 0 +assRecDevMinYear_BFS 0 +assRecDevMinYear_BFF 0 +assRecDevMinYear_BFD 0 +assRecDevMinYear_BG 0 +assRecDevMinYear_BMD 0 +assRecDevMinYear_BML 0 +assRecDevMinYear_BMS 0 +assRecDevMinYear_PWN 0 +assRecDevMinYear_ZL 0 +assRecDevMinYear_BD 0 +assRecDevMinYear_MA 0 +assRecDevMinYear_MB 0 +assRecDevMinYear_SG 0 +assRecDevMinYear_BC 0 +assRecDevMinYear_ZG 0 +assRecDevMinYear_PL 0 +assRecDevMinYear_DF 0 +assRecDevMinYear_PS 0 +assRecDevMinYear_ZM 0 +assRecDevMinYear_ZS 0 +assRecDevMinYear_DL 0 +assRecDevMinYear_DR 0 +assRecDevMinYear_DC 0 + +## Close kin parameters +nTotSamps 0 +first_sy 0 +last_sy 0 +first_dy 0 +Nscale 0 +ThreshPercLost 0 +samp_power 0 +a_ck_thresh 0 +a_ck_thresh2 0 +a_ck_scalar 0 +a_ck_scalar2 0 +thresh_mat 0 +HSP_false_neg_loss_rate 0 + + +## Tier parameters +Tier1_cv 0.2 # CV for Tier 1 assessment + +tier3RuleA 1.2 # Constant in the expression for tier 3 (p = A + Br + Cr^2 + Dr^3 + Er^4 + Fr^5 ) +tier3RuleB 0.0295 # Coefficient in the expression for tier 3 +tier3RuleC 0.2313 # Coefficient in the expression for tier 3 +tier3RuleD 1.209 # Coefficient in the expression for tier 3 +tier3RuleE 1.0413 # Coefficient in the expression for tier 3 +tier3RuleF 0.283 # Coefficient in the expression for tier 3 + +Use_TAC_mult 0 # Flag indicating whether to use TAC multiplier or not, filename for the multipliers given below +TAC_mult_filename ../inputs/TAC_mult + +RBC_TACchange_min 0.1 # If the proportional TAC change is less than this than the TAC remains unchanged + + +## Tier 4 parameters +# Tier type. Version of Tier 3 rule to use: 1=original , 2=Neil's +# For tier 4: 1 = original Tier 4, 2 = Rich's new Tier 4 +# For tier 5: 1 = Surplus production, 2 = average length, 3 = DCAC, 4 = SAFE + +tiertype_FPL 0 +tiertype_FPO 0 +tiertype_FPS 0 +tiertype_FVD 0 +tiertype_FVV 0 +tiertype_FVS 0 +tiertype_FVB 0 +tiertype_FVT 0 +tiertype_FVO 0 +tiertype_FMM 0 +tiertype_FMN 0 +tiertype_FBP 1 +tiertype_FDD 0 +tiertype_FDE 0 +tiertype_FDS 0 +tiertype_FDM 0 +tiertype_FDP 0 +tiertype_FDB 0 +tiertype_FDC 1 +tiertype_FDO 0 +tiertype_FDF 1 +tiertype_SHB 0 +tiertype_SHD 0 +tiertype_SHC 0 +tiertype_SHP 0 +tiertype_SHR 0 +tiertype_SSK 0 +tiertype_SB 1 +tiertype_SP 0 +tiertype_PIN 1 +tiertype_REP 0 +tiertype_WHB 1 +tiertype_WHS 0 +tiertype_WHT 1 +tiertype_WDG 0 +tiertype_CEP 1 +tiertype_BFS 0 +tiertype_BFF 1 +tiertype_BFD 0 +tiertype_BG 1 +tiertype_BMD 0 +tiertype_BML 1 +tiertype_BMS 0 +tiertype_PWN 1 +tiertype_ZL 1 +tiertype_BD 1 +tiertype_MA 1 +tiertype_MB 1 +tiertype_SG 1 +tiertype_BC 1 +tiertype_ZG 1 +tiertype_PL 0 +tiertype_DF 0 +tiertype_PS 0 +tiertype_ZM 1 +tiertype_ZS 1 +tiertype_DL 0 +tiertype_DR 0 +tiertype_DC 0 + +# Discard type assumed in the assessment: 1 = biomass, 2 = fraction +DiscType_FPL 0 +DiscType_FPO 0 +DiscType_FPS 0 +DiscType_FVD 0 +DiscType_FVV 0 +DiscType_FVS 0 +DiscType_FVB 0 +DiscType_FVT 0 +DiscType_FVO 0 +DiscType_FMM 0 +DiscType_FMN 0 +DiscType_FBP 1 +DiscType_FDD 0 +DiscType_FDE 0 +DiscType_FDS 0 +DiscType_FDM 0 +DiscType_FDP 0 +DiscType_FDB 0 +DiscType_FDC 1 +DiscType_FDO 0 +DiscType_FDF 1 +DiscType_SHB 0 +DiscType_SHD 0 +DiscType_SHC 0 +DiscType_SHP 0 +DiscType_SHR 0 +DiscType_SSK 0 +DiscType_SB 1 +DiscType_SP 0 +DiscType_PIN 1 +DiscType_REP 0 +DiscType_WHB 1 +DiscType_WHS 0 +DiscType_WHT 1 +DiscType_WDG 0 +DiscType_CEP 1 +DiscType_BFS 0 +DiscType_BFF 1 +DiscType_BFD 0 +DiscType_BG 1 +DiscType_BMD 0 +DiscType_BML 1 +DiscType_BMS 0 +DiscType_PWN 1 +DiscType_ZL 1 +DiscType_BD 1 +DiscType_MA 1 +DiscType_MB 1 +DiscType_SG 1 +DiscType_BC 1 +DiscType_ZG 1 +DiscType_PL 0 +DiscType_DF 0 +DiscType_PS 0 +DiscType_ZM 1 +DiscType_ZS 1 +DiscType_DL 0 +DiscType_DR 0 +DiscType_DC 0 + +# Max exploitation rate - 0.63 corresponds to F=1, reduce this to reduce catches +MaxH_FPL 0 +MaxH_FPO 0 +MaxH_FPS 0 +MaxH_FVD 0 +MaxH_FVV 0 +MaxH_FVS 0 +MaxH_FVB 0 +MaxH_FVT 0 +MaxH_FVO 0 +MaxH_FMM 0 +MaxH_FMN 0 +MaxH_FBP 1 +MaxH_FDD 0 +MaxH_FDE 0 +MaxH_FDS 0 +MaxH_FDM 0 +MaxH_FDP 0 +MaxH_FDB 0 +MaxH_FDC 1 +MaxH_FDO 0 +MaxH_FDF 1 +MaxH_SHB 0 +MaxH_SHD 0 +MaxH_SHC 0 +MaxH_SHP 0 +MaxH_SHR 0 +MaxH_SSK 0 +MaxH_SB 1 +MaxH_SP 0 +MaxH_PIN 1 +MaxH_REP 0 +MaxH_WHB 1 +MaxH_WHS 0 +MaxH_WHT 1 +MaxH_WDG 0 +MaxH_CEP 1 +MaxH_BFS 0 +MaxH_BFF 1 +MaxH_BFD 0 +MaxH_BG 1 +MaxH_BMD 0 +MaxH_BML 1 +MaxH_BMS 0 +MaxH_PWN 1 +MaxH_ZL 1 +MaxH_BD 1 +MaxH_MA 1 +MaxH_MB 1 +MaxH_SG 1 +MaxH_BC 1 +MaxH_ZG 1 +MaxH_PL 0 +MaxH_DF 0 +MaxH_PS 0 +MaxH_ZM 1 +MaxH_ZS 1 +MaxH_DL 0 +MaxH_DR 0 +MaxH_DC 0 + +# Growth age for L1 for SS control file +Growthage_L1_FPL 0 +Growthage_L1_FPO 0 +Growthage_L1_FPS 0 +Growthage_L1_FVD 0 +Growthage_L1_FVV 0 +Growthage_L1_FVS 0 +Growthage_L1_FVB 0 +Growthage_L1_FVT 0 +Growthage_L1_FVO 0 +Growthage_L1_FMM 0 +Growthage_L1_FMN 0 +Growthage_L1_FBP 1 +Growthage_L1_FDD 0 +Growthage_L1_FDE 0 +Growthage_L1_FDS 0 +Growthage_L1_FDM 0 +Growthage_L1_FDP 0 +Growthage_L1_FDB 0 +Growthage_L1_FDC 1 +Growthage_L1_FDO 0 +Growthage_L1_FDF 1 +Growthage_L1_SHB 0 +Growthage_L1_SHD 0 +Growthage_L1_SHC 0 +Growthage_L1_SHP 0 +Growthage_L1_SHR 0 +Growthage_L1_SSK 0 +Growthage_L1_SB 1 +Growthage_L1_SP 0 +Growthage_L1_PIN 1 +Growthage_L1_REP 0 +Growthage_L1_WHB 1 +Growthage_L1_WHS 0 +Growthage_L1_WHT 1 +Growthage_L1_WDG 0 +Growthage_L1_CEP 1 +Growthage_L1_BFS 0 +Growthage_L1_BFF 1 +Growthage_L1_BFD 0 +Growthage_L1_BG 1 +Growthage_L1_BMD 0 +Growthage_L1_BML 1 +Growthage_L1_BMS 0 +Growthage_L1_PWN 1 +Growthage_L1_ZL 1 +Growthage_L1_BD 1 +Growthage_L1_MA 1 +Growthage_L1_MB 1 +Growthage_L1_SG 1 +Growthage_L1_BC 1 +Growthage_L1_ZG 1 +Growthage_L1_PL 0 +Growthage_L1_DF 0 +Growthage_L1_PS 0 +Growthage_L1_ZM 1 +Growthage_L1_ZS 1 +Growthage_L1_DL 0 +Growthage_L1_DR 0 +Growthage_L1_DC 0 + +# Growth age for L2 for SS control file +Growthage_L2_FPL 0 +Growthage_L2_FPO 0 +Growthage_L2_FPS 0 +Growthage_L2_FVD 0 +Growthage_L2_FVV 0 +Growthage_L2_FVS 0 +Growthage_L2_FVB 0 +Growthage_L2_FVT 0 +Growthage_L2_FVO 0 +Growthage_L2_FMM 0 +Growthage_L2_FMN 0 +Growthage_L2_FBP 1 +Growthage_L2_FDD 0 +Growthage_L2_FDE 0 +Growthage_L2_FDS 0 +Growthage_L2_FDM 0 +Growthage_L2_FDP 0 +Growthage_L2_FDB 0 +Growthage_L2_FDC 1 +Growthage_L2_FDO 0 +Growthage_L2_FDF 1 +Growthage_L2_SHB 0 +Growthage_L2_SHD 0 +Growthage_L2_SHC 0 +Growthage_L2_SHP 0 +Growthage_L2_SHR 0 +Growthage_L2_SSK 0 +Growthage_L2_SB 1 +Growthage_L2_SP 0 +Growthage_L2_PIN 1 +Growthage_L2_REP 0 +Growthage_L2_WHB 1 +Growthage_L2_WHS 0 +Growthage_L2_WHT 1 +Growthage_L2_WDG 0 +Growthage_L2_CEP 1 +Growthage_L2_BFS 0 +Growthage_L2_BFF 1 +Growthage_L2_BFD 0 +Growthage_L2_BG 1 +Growthage_L2_BMD 0 +Growthage_L2_BML 1 +Growthage_L2_BMS 0 +Growthage_L2_PWN 1 +Growthage_L2_ZL 1 +Growthage_L2_BD 1 +Growthage_L2_MA 1 +Growthage_L2_MB 1 +Growthage_L2_SG 1 +Growthage_L2_BC 1 +Growthage_L2_ZG 1 +Growthage_L2_PL 0 +Growthage_L2_DF 0 +Growthage_L2_PS 0 +Growthage_L2_ZM 1 +Growthage_L2_ZS 1 +Growthage_L2_DL 0 +Growthage_L2_DR 0 +Growthage_L2_DC 0 + +# Proportion of final historical year catch to use if RBC = 0 +MinCatch_FPL 0 +MinCatch_FPO 0 +MinCatch_FPS 0 +MinCatch_FVD 0 +MinCatch_FVV 0 +MinCatch_FVS 0 +MinCatch_FVB 0 +MinCatch_FVT 0 +MinCatch_FVO 0 +MinCatch_FMM 0 +MinCatch_FMN 0 +MinCatch_FBP 0.05 +MinCatch_FDD 0 +MinCatch_FDE 0 +MinCatch_FDS 0 +MinCatch_FDM 0 +MinCatch_FDP 0 +MinCatch_FDB 0 +MinCatch_FDC 0.05 +MinCatch_FDO 0 +MinCatch_FDF 0.05 +MinCatch_SHB 0 +MinCatch_SHD 0 +MinCatch_SHC 0 +MinCatch_SHP 0 +MinCatch_SHR 0 +MinCatch_SSK 0 +MinCatch_SB 0.05 +MinCatch_SP 0 +MinCatch_PIN 0.05 +MinCatch_REP 0 +MinCatch_WHB 0.05 +MinCatch_WHS 0 +MinCatch_WHT 0.05 +MinCatch_WDG 0 +MinCatch_CEP 0.05 +MinCatch_BFS 0 +MinCatch_BFF 0.05 +MinCatch_BFD 0 +MinCatch_BG 0.05 +MinCatch_BMD 0 +MinCatch_BML 0.05 +MinCatch_BMS 0 +MinCatch_PWN 0.05 +MinCatch_ZL 0.05 +MinCatch_BD 0.05 +MinCatch_MA 0.05 +MinCatch_MB 0.05 +MinCatch_SG 0.05 +MinCatch_BC 0.05 +MinCatch_ZG 0.05 +MinCatch_PL 0 +MinCatch_DF 0 +MinCatch_PS 0 +MinCatch_ZM 0.05 +MinCatch_ZS 0.05 +MinCatch_DL 0 +MinCatch_DR 0 +MinCatch_DC 0 + +# Maturity inflection for SS control file +Maturity_Inflect_FPL 0 +Maturity_Inflect_FPO 0 +Maturity_Inflect_FPS 0 +Maturity_Inflect_FVD 0 +Maturity_Inflect_FVV 0 +Maturity_Inflect_FVS 0 +Maturity_Inflect_FVB 0 +Maturity_Inflect_FVT 0 +Maturity_Inflect_FVO 0 +Maturity_Inflect_FMM 0 +Maturity_Inflect_FMN 0 +Maturity_Inflect_FBP 10 +Maturity_Inflect_FDD 0 +Maturity_Inflect_FDE 0 +Maturity_Inflect_FDS 0 +Maturity_Inflect_FDM 0 +Maturity_Inflect_FDP 0 +Maturity_Inflect_FDB 0 +Maturity_Inflect_FDC 10 +Maturity_Inflect_FDO 0 +Maturity_Inflect_FDF 10 +Maturity_Inflect_SHB 0 +Maturity_Inflect_SHD 0 +Maturity_Inflect_SHC 0 +Maturity_Inflect_SHP 0 +Maturity_Inflect_SHR 0 +Maturity_Inflect_SSK 0 +Maturity_Inflect_SB 10 +Maturity_Inflect_SP 0 +Maturity_Inflect_PIN 10 +Maturity_Inflect_REP 0 +Maturity_Inflect_WHB 10 +Maturity_Inflect_WHS 0 +Maturity_Inflect_WHT 10 +Maturity_Inflect_WDG 0 +Maturity_Inflect_CEP 10 +Maturity_Inflect_BFS 0 +Maturity_Inflect_BFF 10 +Maturity_Inflect_BFD 0 +Maturity_Inflect_BG 10 +Maturity_Inflect_BMD 0 +Maturity_Inflect_BML 10 +Maturity_Inflect_BMS 0 +Maturity_Inflect_PWN 10 +Maturity_Inflect_ZL 10 +Maturity_Inflect_BD 10 +Maturity_Inflect_MA 10 +Maturity_Inflect_MB 10 +Maturity_Inflect_SG 10 +Maturity_Inflect_BC 10 +Maturity_Inflect_ZG 10 +Maturity_Inflect_PL 0 +Maturity_Inflect_DF 0 +Maturity_Inflect_PS 0 +Maturity_Inflect_ZM 10 +Maturity_Inflect_ZS 10 +Maturity_Inflect_DL 0 +Maturity_Inflect_DR 0 +Maturity_Inflect_DC 0 + + +# Maturity slope for SS control file +Maturity_Slope_FPL 0 +Maturity_Slope_FPO 0 +Maturity_Slope_FPS 0 +Maturity_Slope_FVD 0 +Maturity_Slope_FVV 0 +Maturity_Slope_FVS 0 +Maturity_Slope_FVB 0 +Maturity_Slope_FVT 0 +Maturity_Slope_FVO 0 +Maturity_Slope_FMM 0 +Maturity_Slope_FMN 0 +Maturity_Slope_FBP -0.25 +Maturity_Slope_FDD 0 +Maturity_Slope_FDE 0 +Maturity_Slope_FDS 0 +Maturity_Slope_FDM 0 +Maturity_Slope_FDP 0 +Maturity_Slope_FDB 0 +Maturity_Slope_FDC -0.25 +Maturity_Slope_FDO 0 +Maturity_Slope_FDF -0.25 +Maturity_Slope_SHB 0 +Maturity_Slope_SHD 0 +Maturity_Slope_SHC 0 +Maturity_Slope_SHP 0 +Maturity_Slope_SHR 0 +Maturity_Slope_SSK 0 +Maturity_Slope_SB -0.25 +Maturity_Slope_SP 0 +Maturity_Slope_PIN -0.25 +Maturity_Slope_REP 0 +Maturity_Slope_WHB -0.25 +Maturity_Slope_WHS 0 +Maturity_Slope_WHT -0.25 +Maturity_Slope_WDG 0 +Maturity_Slope_CEP -0.25 +Maturity_Slope_BFS 0 +Maturity_Slope_BFF -0.25 +Maturity_Slope_BFD 0 +Maturity_Slope_BG -0.25 +Maturity_Slope_BMD 0 +Maturity_Slope_BML -0.25 +Maturity_Slope_BMS 0 +Maturity_Slope_PWN -0.25 +Maturity_Slope_ZL -0.25 +Maturity_Slope_BD -0.25 +Maturity_Slope_MA -0.25 +Maturity_Slope_MB -0.25 +Maturity_Slope_SG -0.25 +Maturity_Slope_BC -0.25 +Maturity_Slope_ZG -0.25 +Maturity_Slope_PL 0 +Maturity_Slope_DF 0 +Maturity_Slope_PS 0 +Maturity_Slope_ZM -0.25 +Maturity_Slope_ZS -0.25 +Maturity_Slope_DL 0 +Maturity_Slope_DR 0 +Maturity_Slope_DC 0 + + +## Tier specific rules +# Age-selectivity pattern +Agesel_Pattern_FPL 0 +Agesel_Pattern_FPO 0 +Agesel_Pattern_FPS 0 +Agesel_Pattern_FVD 0 +Agesel_Pattern_FVV 0 +Agesel_Pattern_FVS 0 +Agesel_Pattern_FVB 0 +Agesel_Pattern_FVT 0 +Agesel_Pattern_FVO 0 +Agesel_Pattern_FMM 0 +Agesel_Pattern_FMN 0 +Agesel_Pattern_FBP 1 +Agesel_Pattern_FDD 0 +Agesel_Pattern_FDE 0 +Agesel_Pattern_FDS 0 +Agesel_Pattern_FDM 0 +Agesel_Pattern_FDP 0 +Agesel_Pattern_FDB 0 +Agesel_Pattern_FDC 1 +Agesel_Pattern_FDO 0 +Agesel_Pattern_FDF 1 +Agesel_Pattern_SHB 0 +Agesel_Pattern_SHD 0 +Agesel_Pattern_SHC 0 +Agesel_Pattern_SHP 0 +Agesel_Pattern_SHR 0 +Agesel_Pattern_SSK 0 +Agesel_Pattern_SB 1 +Agesel_Pattern_SP 0 +Agesel_Pattern_PIN 1 +Agesel_Pattern_REP 0 +Agesel_Pattern_WHB 1 +Agesel_Pattern_WHS 0 +Agesel_Pattern_WHT 1 +Agesel_Pattern_WDG 0 +Agesel_Pattern_CEP 1 +Agesel_Pattern_BFS 0 +Agesel_Pattern_BFF 1 +Agesel_Pattern_BFD 0 +Agesel_Pattern_BG 1 +Agesel_Pattern_BMD 0 +Agesel_Pattern_BML 1 +Agesel_Pattern_BMS 0 +Agesel_Pattern_PWN 1 +Agesel_Pattern_ZL 1 +Agesel_Pattern_BD 1 +Agesel_Pattern_MA 1 +Agesel_Pattern_MB 1 +Agesel_Pattern_SG 1 +Agesel_Pattern_BC 1 +Agesel_Pattern_ZG 1 +Agesel_Pattern_PL 0 +Agesel_Pattern_DF 0 +Agesel_Pattern_PS 0 +Agesel_Pattern_ZM 1 +Agesel_Pattern_ZS 1 +Agesel_Pattern_DL 0 +Agesel_Pattern_DR 0 +Agesel_Pattern_DC 0 + + +# CV to use on true depletion if not using SS2 + +# Flag indicating if want T1 to estimate steepness in phase n, else -n, i.e. 2 if want tier 1 to estimate steepness, else -2 +T1_steep_phase_FPL 0 +T1_steep_phase_FPO 0 +T1_steep_phase_FPS 0 +T1_steep_phase_FVD 0 +T1_steep_phase_FVV 0 +T1_steep_phase_FVS 0 +T1_steep_phase_FVB 0 +T1_steep_phase_FVT 0 +T1_steep_phase_FVO 0 +T1_steep_phase_FMM 0 +T1_steep_phase_FMN 0 +T1_steep_phase_FBP -2 +T1_steep_phase_FDD 0 +T1_steep_phase_FDE 0 +T1_steep_phase_FDS 0 +T1_steep_phase_FDM 0 +T1_steep_phase_FDP 0 +T1_steep_phase_FDB 0 +T1_steep_phase_FDC -2 +T1_steep_phase_FDO 0 +T1_steep_phase_FDF -2 +T1_steep_phase_SHB 0 +T1_steep_phase_SHD 0 +T1_steep_phase_SHC 0 +T1_steep_phase_SHP 0 +T1_steep_phase_SHR 0 +T1_steep_phase_SSK 0 +T1_steep_phase_SB -2 +T1_steep_phase_SP 0 +T1_steep_phase_PIN -2 +T1_steep_phase_REP 0 +T1_steep_phase_WHB -2 +T1_steep_phase_WHS 0 +T1_steep_phase_WHT -2 +T1_steep_phase_WDG 0 +T1_steep_phase_CEP -2 +T1_steep_phase_BFS 0 +T1_steep_phase_BFF -2 +T1_steep_phase_BFD 0 +T1_steep_phase_BG -2 +T1_steep_phase_BMD 0 +T1_steep_phase_BML -2 +T1_steep_phase_BMS 0 +T1_steep_phase_PWN -2 +T1_steep_phase_ZL -2 +T1_steep_phase_BD -2 +T1_steep_phase_MA -2 +T1_steep_phase_MB -2 +T1_steep_phase_SG -2 +T1_steep_phase_BC -2 +T1_steep_phase_ZG -2 +T1_steep_phase_PL 0 +T1_steep_phase_DF 0 +T1_steep_phase_PS 0 +T1_steep_phase_ZM -2 +T1_steep_phase_ZS -2 +T1_steep_phase_DL 0 +T1_steep_phase_DR 0 +T1_steep_phase_DC 0 + +# Tier 3 parameters +# Tier 3 F calc method : 1=catch curve, 2=CCsel (APSM), 3='true' F +Tier3_Fcalc_FPL 0 +Tier3_Fcalc_FPO 0 +Tier3_Fcalc_FPS 0 +Tier3_Fcalc_FVD 0 +Tier3_Fcalc_FVV 0 +Tier3_Fcalc_FVS 0 +Tier3_Fcalc_FVB 0 +Tier3_Fcalc_FVT 0 +Tier3_Fcalc_FVO 0 +Tier3_Fcalc_FMM 0 +Tier3_Fcalc_FMN 0 +Tier3_Fcalc_FBP 1 +Tier3_Fcalc_FDD 0 +Tier3_Fcalc_FDE 0 +Tier3_Fcalc_FDS 0 +Tier3_Fcalc_FDM 0 +Tier3_Fcalc_FDP 0 +Tier3_Fcalc_FDB 0 +Tier3_Fcalc_FDC 1 +Tier3_Fcalc_FDO 0 +Tier3_Fcalc_FDF 1 +Tier3_Fcalc_SHB 0 +Tier3_Fcalc_SHD 0 +Tier3_Fcalc_SHC 0 +Tier3_Fcalc_SHP 0 +Tier3_Fcalc_SHR 0 +Tier3_Fcalc_SSK 0 +Tier3_Fcalc_SB 1 +Tier3_Fcalc_SP 0 +Tier3_Fcalc_PIN 1 +Tier3_Fcalc_REP 0 +Tier3_Fcalc_WHB 1 +Tier3_Fcalc_WHS 0 +Tier3_Fcalc_WHT 1 +Tier3_Fcalc_WDG 0 +Tier3_Fcalc_CEP 1 +Tier3_Fcalc_BFS 0 +Tier3_Fcalc_BFF 1 +Tier3_Fcalc_BFD 0 +Tier3_Fcalc_BG 1 +Tier3_Fcalc_BMD 0 +Tier3_Fcalc_BML 1 +Tier3_Fcalc_BMS 0 +Tier3_Fcalc_PWN 1 +Tier3_Fcalc_ZL 1 +Tier3_Fcalc_BD 1 +Tier3_Fcalc_MA 1 +Tier3_Fcalc_MB 1 +Tier3_Fcalc_SG 1 +Tier3_Fcalc_BC 1 +Tier3_Fcalc_ZG 1 +Tier3_Fcalc_PL 0 +Tier3_Fcalc_DF 0 +Tier3_Fcalc_PS 0 +Tier3_Fcalc_ZM 1 +Tier3_Fcalc_ZS 1 +Tier3_Fcalc_DL 0 +Tier3_Fcalc_DR 0 +Tier3_Fcalc_DC 0 + +# Tier 3 time period for calc Ccurr : 1=4 years, 2=no ages selected (uses 1 for true by default) +Tier3_time_FPL 0 +Tier3_time_FPO 0 +Tier3_time_FPS 0 +Tier3_time_FVD 0 +Tier3_time_FVV 0 +Tier3_time_FVS 0 +Tier3_time_FVB 0 +Tier3_time_FVT 0 +Tier3_time_FVO 0 +Tier3_time_FMM 0 +Tier3_time_FMN 0 +Tier3_time_FBP 1 +Tier3_time_FDD 0 +Tier3_time_FDE 0 +Tier3_time_FDS 0 +Tier3_time_FDM 0 +Tier3_time_FDP 0 +Tier3_time_FDB 0 +Tier3_time_FDC 1 +Tier3_time_FDO 0 +Tier3_time_FDF 1 +Tier3_time_SHB 0 +Tier3_time_SHD 0 +Tier3_time_SHC 0 +Tier3_time_SHP 0 +Tier3_time_SHR 0 +Tier3_time_SSK 0 +Tier3_time_SB 1 +Tier3_time_SP 0 +Tier3_time_PIN 1 +Tier3_time_REP 0 +Tier3_time_WHB 1 +Tier3_time_WHS 0 +Tier3_time_WHT 1 +Tier3_time_WDG 0 +Tier3_time_CEP 1 +Tier3_time_BFS 0 +Tier3_time_BFF 1 +Tier3_time_BFD 0 +Tier3_time_BG 1 +Tier3_time_BMD 0 +Tier3_time_BML 1 +Tier3_time_BMS 0 +Tier3_time_PWN 1 +Tier3_time_ZL 1 +Tier3_time_BD 1 +Tier3_time_MA 1 +Tier3_time_MB 1 +Tier3_time_SG 1 +Tier3_time_BC 1 +Tier3_time_ZG 1 +Tier3_time_PL 0 +Tier3_time_DF 0 +Tier3_time_PS 0 +Tier3_time_ZM 1 +Tier3_time_ZS 1 +Tier3_time_DL 0 +Tier3_time_DR 0 +Tier3_time_DC 0 + + +# Maximum age for Tier 3 +Tier3_maxage_FPL 0 +Tier3_maxage_FPO 0 +Tier3_maxage_FPS 0 +Tier3_maxage_FVD 0 +Tier3_maxage_FVV 0 +Tier3_maxage_FVS 0 +Tier3_maxage_FVB 0 +Tier3_maxage_FVT 0 +Tier3_maxage_FVO 0 +Tier3_maxage_FMM 0 +Tier3_maxage_FMN 0 +Tier3_maxage_FBP 20 +Tier3_maxage_FDD 0 +Tier3_maxage_FDE 0 +Tier3_maxage_FDS 0 +Tier3_maxage_FDM 0 +Tier3_maxage_FDP 0 +Tier3_maxage_FDB 0 +Tier3_maxage_FDC 20 +Tier3_maxage_FDO 0 +Tier3_maxage_FDF 20 +Tier3_maxage_SHB 0 +Tier3_maxage_SHD 0 +Tier3_maxage_SHC 0 +Tier3_maxage_SHP 0 +Tier3_maxage_SHR 0 +Tier3_maxage_SSK 0 +Tier3_maxage_SB 20 +Tier3_maxage_SP 0 +Tier3_maxage_PIN 20 +Tier3_maxage_REP 0 +Tier3_maxage_WHB 20 +Tier3_maxage_WHS 0 +Tier3_maxage_WHT 20 +Tier3_maxage_WDG 0 +Tier3_maxage_CEP 20 +Tier3_maxage_BFS 0 +Tier3_maxage_BFF 20 +Tier3_maxage_BFD 0 +Tier3_maxage_BG 20 +Tier3_maxage_BMD 0 +Tier3_maxage_BML 20 +Tier3_maxage_BMS 0 +Tier3_maxage_PWN 20 +Tier3_maxage_ZL 20 +Tier3_maxage_BD 20 +Tier3_maxage_MA 20 +Tier3_maxage_MB 20 +Tier3_maxage_SG 20 +Tier3_maxage_BC 20 +Tier3_maxage_ZG 20 +Tier3_maxage_PL 0 +Tier3_maxage_DF 0 +Tier3_maxage_PS 0 +Tier3_maxage_ZM 20 +Tier3_maxage_ZS 20 +Tier3_maxage_DL 0 +Tier3_maxage_DR 0 +Tier3_maxage_DC 0 + +# M input for tier 3 +Tier3_M_FPL 0 +Tier3_M_FPO 0 +Tier3_M_FPS 0 +Tier3_M_FVD 0 +Tier3_M_FVV 0 +Tier3_M_FVS 0 +Tier3_M_FVB 0 +Tier3_M_FVT 0 +Tier3_M_FVO 0 +Tier3_M_FMM 0 +Tier3_M_FMN 0 +Tier3_M_FBP 0.2 +Tier3_M_FDD 0 +Tier3_M_FDE 0 +Tier3_M_FDS 0 +Tier3_M_FDM 0 +Tier3_M_FDP 0 +Tier3_M_FDB 0 +Tier3_M_FDC 0.2 +Tier3_M_FDO 0 +Tier3_M_FDF 0.2 +Tier3_M_SHB 0 +Tier3_M_SHD 0 +Tier3_M_SHC 0 +Tier3_M_SHP 0 +Tier3_M_SHR 0 +Tier3_M_SSK 0 +Tier3_M_SB 0.2 +Tier3_M_SP 0 +Tier3_M_PIN 0.2 +Tier3_M_REP 0 +Tier3_M_WHB 0.2 +Tier3_M_WHS 0 +Tier3_M_WHT 0.2 +Tier3_M_WDG 0 +Tier3_M_CEP 0.2 +Tier3_M_BFS 0 +Tier3_M_BFF 0.2 +Tier3_M_BFD 0 +Tier3_M_BG 0.2 +Tier3_M_BMD 0 +Tier3_M_BML 0.2 +Tier3_M_BMS 0 +Tier3_M_PWN 0.2 +Tier3_M_ZL 0.2 +Tier3_M_BD 0.2 +Tier3_M_MA 0.2 +Tier3_M_MB 0.2 +Tier3_M_SG 0.2 +Tier3_M_BC 0.2 +Tier3_M_ZG 0.2 +Tier3_M_PL 0 +Tier3_M_DF 0 +Tier3_M_PS 0 +Tier3_M_ZM 0.2 +Tier3_M_ZS 0.2 +Tier3_M_DL 0 +Tier3_M_DR 0 +Tier3_M_DC 0 + +# Length (cm) at 25% selectivity - input for tier 3 +Tier3_S25_FPL 0 +Tier3_S25_FPO 0 +Tier3_S25_FPS 0 +Tier3_S25_FVD 0 +Tier3_S25_FVV 0 +Tier3_S25_FVS 0 +Tier3_S25_FVB 0 +Tier3_S25_FVT 0 +Tier3_S25_FVO 0 +Tier3_S25_FMM 0 +Tier3_S25_FMN 0 +Tier3_S25_FBP 10 +Tier3_S25_FDD 0 +Tier3_S25_FDE 0 +Tier3_S25_FDS 0 +Tier3_S25_FDM 0 +Tier3_S25_FDP 0 +Tier3_S25_FDB 0 +Tier3_S25_FDC 10 +Tier3_S25_FDO 0 +Tier3_S25_FDF 10 +Tier3_S25_SHB 0 +Tier3_S25_SHD 0 +Tier3_S25_SHC 0 +Tier3_S25_SHP 0 +Tier3_S25_SHR 0 +Tier3_S25_SSK 0 +Tier3_S25_SB 10 +Tier3_S25_SP 0 +Tier3_S25_PIN 10 +Tier3_S25_REP 0 +Tier3_S25_WHB 10 +Tier3_S25_WHS 0 +Tier3_S25_WHT 10 +Tier3_S25_WDG 0 +Tier3_S25_CEP 10 +Tier3_S25_BFS 0 +Tier3_S25_BFF 10 +Tier3_S25_BFD 0 +Tier3_S25_BG 10 +Tier3_S25_BMD 0 +Tier3_S25_BML 10 +Tier3_S25_BMS 0 +Tier3_S25_PWN 10 +Tier3_S25_ZL 10 +Tier3_S25_BD 10 +Tier3_S25_MA 10 +Tier3_S25_MB 10 +Tier3_S25_SG 10 +Tier3_S25_BC 10 +Tier3_S25_ZG 10 +Tier3_S25_PL 0 +Tier3_S25_DF 0 +Tier3_S25_PS 0 +Tier3_S25_ZM 10 +Tier3_S25_ZS 10 +Tier3_S25_DL 0 +Tier3_S25_DR 0 +Tier3_S25_DC 0 + +# Length (cm) at 50% selectivity - input for tier 3 +Tier3_S50_FPL 0 +Tier3_S50_FPO 0 +Tier3_S50_FPS 0 +Tier3_S50_FVD 0 +Tier3_S50_FVV 0 +Tier3_S50_FVS 0 +Tier3_S50_FVB 0 +Tier3_S50_FVT 0 +Tier3_S50_FVO 0 +Tier3_S50_FMM 0 +Tier3_S50_FMN 0 +Tier3_S50_FBP 20 +Tier3_S50_FDD 0 +Tier3_S50_FDE 0 +Tier3_S50_FDS 0 +Tier3_S50_FDM 0 +Tier3_S50_FDP 0 +Tier3_S50_FDB 0 +Tier3_S50_FDC 20 +Tier3_S50_FDO 0 +Tier3_S50_FDF 20 +Tier3_S50_SHB 0 +Tier3_S50_SHD 0 +Tier3_S50_SHC 0 +Tier3_S50_SHP 0 +Tier3_S50_SHR 0 +Tier3_S50_SSK 0 +Tier3_S50_SB 20 +Tier3_S50_SP 0 +Tier3_S50_PIN 20 +Tier3_S50_REP 0 +Tier3_S50_WHB 20 +Tier3_S50_WHS 0 +Tier3_S50_WHT 20 +Tier3_S50_WDG 0 +Tier3_S50_CEP 20 +Tier3_S50_BFS 0 +Tier3_S50_BFF 20 +Tier3_S50_BFD 0 +Tier3_S50_BG 20 +Tier3_S50_BMD 0 +Tier3_S50_BML 20 +Tier3_S50_BMS 0 +Tier3_S50_PWN 20 +Tier3_S50_ZL 20 +Tier3_S50_BD 20 +Tier3_S50_MA 20 +Tier3_S50_MB 20 +Tier3_S50_SG 20 +Tier3_S50_BC 20 +Tier3_S50_ZG 20 +Tier3_S50_PL 0 +Tier3_S50_DF 0 +Tier3_S50_PS 0 +Tier3_S50_ZM 20 +Tier3_S50_ZS 20 +Tier3_S50_DL 0 +Tier3_S50_DR 0 +Tier3_S50_DC 0 + +# Starting estimate of F for tier 3 (equilibrium F method) +Tier3_F_FPL 0 +Tier3_F_FPO 0 +Tier3_F_FPS 0 +Tier3_F_FVD 0 +Tier3_F_FVV 0 +Tier3_F_FVS 0 +Tier3_F_FVB 0 +Tier3_F_FVT 0 +Tier3_F_FVO 0 +Tier3_F_FMM 0 +Tier3_F_FMN 0 +Tier3_F_FBP 0.2 +Tier3_F_FDD 0 +Tier3_F_FDE 0 +Tier3_F_FDS 0 +Tier3_F_FDM 0 +Tier3_F_FDP 0 +Tier3_F_FDB 0 +Tier3_F_FDC 0.2 +Tier3_F_FDO 0 +Tier3_F_FDF 0.2 +Tier3_F_SHB 0 +Tier3_F_SHD 0 +Tier3_F_SHC 0 +Tier3_F_SHP 0 +Tier3_F_SHR 0 +Tier3_F_SSK 0 +Tier3_F_SB 0.2 +Tier3_F_SP 0 +Tier3_F_PIN 0.2 +Tier3_F_REP 0 +Tier3_F_WHB 0.2 +Tier3_F_WHS 0 +Tier3_F_WHT 0.2 +Tier3_F_WDG 0 +Tier3_F_CEP 0.2 +Tier3_F_BFS 0 +Tier3_F_BFF 0.2 +Tier3_F_BFD 0 +Tier3_F_BG 0.2 +Tier3_F_BMD 0 +Tier3_F_BML 0.2 +Tier3_F_BMS 0 +Tier3_F_PWN 0.2 +Tier3_F_ZL 0.2 +Tier3_F_BD 0.2 +Tier3_F_MA 0.2 +Tier3_F_MB 0.2 +Tier3_F_SG 0.2 +Tier3_F_BC 0.2 +Tier3_F_ZG 0.2 +Tier3_F_PL 0 +Tier3_F_DF 0 +Tier3_F_PS 0 +Tier3_F_ZM 0.2 +Tier3_F_ZS 0.2 +Tier3_F_DL 0 +Tier3_F_DR 0 +Tier3_F_DC 0 + +# Steepness input for Tier 3 +Tier3_h_FPL 0 +Tier3_h_FPO 0 +Tier3_h_FPS 0 +Tier3_h_FVD 0 +Tier3_h_FVV 0 +Tier3_h_FVS 0 +Tier3_h_FVB 0 +Tier3_h_FVT 0 +Tier3_h_FVO 0 +Tier3_h_FMM 0 +Tier3_h_FMN 0 +Tier3_h_FBP 0.67 +Tier3_h_FDD 0 +Tier3_h_FDE 0 +Tier3_h_FDS 0 +Tier3_h_FDM 0 +Tier3_h_FDP 0 +Tier3_h_FDB 0 +Tier3_h_FDC 0.67 +Tier3_h_FDO 0 +Tier3_h_FDF 0.67 +Tier3_h_SHB 0 +Tier3_h_SHD 0 +Tier3_h_SHC 0 +Tier3_h_SHP 0 +Tier3_h_SHR 0 +Tier3_h_SSK 0 +Tier3_h_SB 0.67 +Tier3_h_SP 0 +Tier3_h_PIN 0.67 +Tier3_h_REP 0 +Tier3_h_WHB 0.67 +Tier3_h_WHS 0 +Tier3_h_WHT 0.67 +Tier3_h_WDG 0 +Tier3_h_CEP 0.67 +Tier3_h_BFS 0 +Tier3_h_BFF 0.67 +Tier3_h_BFD 0 +Tier3_h_BG 0.67 +Tier3_h_BMD 0 +Tier3_h_BML 0.67 +Tier3_h_BMS 0 +Tier3_h_PWN 0.67 +Tier3_h_ZL 0.67 +Tier3_h_BD 0.67 +Tier3_h_MA 0.67 +Tier3_h_MB 0.67 +Tier3_h_SG 0.67 +Tier3_h_BC 0.67 +Tier3_h_ZG 0.67 +Tier3_h_PL 0 +Tier3_h_DF 0 +Tier3_h_PS 0 +Tier3_h_ZM 0.67 +Tier3_h_ZS 0.67 +Tier3_h_DL 0 +Tier3_h_DR 0 +Tier3_h_DC 0 + +# Knife-edge length at maturity, input for Tier 3 +Tier3_matlen_FPL 0 +Tier3_matlen_FPO 0 +Tier3_matlen_FPS 0 +Tier3_matlen_FVD 0 +Tier3_matlen_FVV 0 +Tier3_matlen_FVS 0 +Tier3_matlen_FVB 0 +Tier3_matlen_FVT 0 +Tier3_matlen_FVO 0 +Tier3_matlen_FMM 0 +Tier3_matlen_FMN 0 +Tier3_matlen_FBP 20 +Tier3_matlen_FDD 0 +Tier3_matlen_FDE 0 +Tier3_matlen_FDS 0 +Tier3_matlen_FDM 0 +Tier3_matlen_FDP 0 +Tier3_matlen_FDB 0 +Tier3_matlen_FDC 20 +Tier3_matlen_FDO 0 +Tier3_matlen_FDF 20 +Tier3_matlen_SHB 0 +Tier3_matlen_SHD 0 +Tier3_matlen_SHC 0 +Tier3_matlen_SHP 0 +Tier3_matlen_SHR 0 +Tier3_matlen_SSK 0 +Tier3_matlen_SB 20 +Tier3_matlen_SP 0 +Tier3_matlen_PIN 20 +Tier3_matlen_REP 0 +Tier3_matlen_WHB 20 +Tier3_matlen_WHS 0 +Tier3_matlen_WHT 20 +Tier3_matlen_WDG 0 +Tier3_matlen_CEP 20 +Tier3_matlen_BFS 0 +Tier3_matlen_BFF 20 +Tier3_matlen_BFD 0 +Tier3_matlen_BG 20 +Tier3_matlen_BMD 0 +Tier3_matlen_BML 20 +Tier3_matlen_BMS 0 +Tier3_matlen_PWN 20 +Tier3_matlen_ZL 20 +Tier3_matlen_BD 20 +Tier3_matlen_MA 20 +Tier3_matlen_MB 20 +Tier3_matlen_SG 20 +Tier3_matlen_BC 20 +Tier3_matlen_ZG 20 +Tier3_matlen_PL 0 +Tier3_matlen_DF 0 +Tier3_matlen_PS 0 +Tier3_matlen_ZM 20 +Tier3_matlen_ZS 20 +Tier3_matlen_DL 0 +Tier3_matlen_DR 0 +Tier3_matlen_DC 0 + + +# Max F to use in Fref calcs +Tier3_maxF_FPL 0 +Tier3_maxF_FPO 0 +Tier3_maxF_FPS 0 +Tier3_maxF_FVD 0 +Tier3_maxF_FVV 0 +Tier3_maxF_FVS 0 +Tier3_maxF_FVB 0 +Tier3_maxF_FVT 0 +Tier3_maxF_FVO 0 +Tier3_maxF_FMM 0 +Tier3_maxF_FMN 0 +Tier3_maxF_FBP 2 +Tier3_maxF_FDD 0 +Tier3_maxF_FDE 0 +Tier3_maxF_FDS 0 +Tier3_maxF_FDM 0 +Tier3_maxF_FDP 0 +Tier3_maxF_FDB 0 +Tier3_maxF_FDC 2 +Tier3_maxF_FDO 0 +Tier3_maxF_FDF 2 +Tier3_maxF_SHB 0 +Tier3_maxF_SHD 0 +Tier3_maxF_SHC 0 +Tier3_maxF_SHP 0 +Tier3_maxF_SHR 0 +Tier3_maxF_SSK 0 +Tier3_maxF_SB 2 +Tier3_maxF_SP 0 +Tier3_maxF_PIN 2 +Tier3_maxF_REP 0 +Tier3_maxF_WHB 2 +Tier3_maxF_WHS 0 +Tier3_maxF_WHT 2 +Tier3_maxF_WDG 0 +Tier3_maxF_CEP 2 +Tier3_maxF_BFS 0 +Tier3_maxF_BFF 2 +Tier3_maxF_BFD 0 +Tier3_maxF_BG 2 +Tier3_maxF_BMD 0 +Tier3_maxF_BML 2 +Tier3_maxF_BMS 0 +Tier3_maxF_PWN 2 +Tier3_maxF_ZL 2 +Tier3_maxF_BD 2 +Tier3_maxF_MA 2 +Tier3_maxF_MB 2 +Tier3_maxF_SG 2 +Tier3_maxF_BC 2 +Tier3_maxF_ZG 2 +Tier3_maxF_PL 0 +Tier3_maxF_DF 0 +Tier3_maxF_PS 0 +Tier3_maxF_ZM 2 +Tier3_maxF_ZS 2 +Tier3_maxF_DL 0 +Tier3_maxF_DR 0 +Tier3_maxF_DC 0 + +# Tier 3 Linf per sex - Linf f and m used in 'true' model +Tier3_Linf_FPL 1 +0 +Tier3_Linf_FPO 1 +0 +Tier3_Linf_FPS 1 +0 +Tier3_Linf_FVD 1 +0 +Tier3_Linf_FVV 1 +0 +Tier3_Linf_FVS 1 +0 +Tier3_Linf_FVB 1 +0 +Tier3_Linf_FVT 1 +0 +Tier3_Linf_FVO 1 +0 +Tier3_Linf_FMM 1 +0 +Tier3_Linf_FMN 1 +0 +Tier3_Linf_FBP 1 +20 +Tier3_Linf_FDD 1 +0 +Tier3_Linf_FDE 1 +0 +Tier3_Linf_FDS 1 +0 +Tier3_Linf_FDM 1 +0 +Tier3_Linf_FDP 1 +0 +Tier3_Linf_FDB 1 +0 +Tier3_Linf_FDC 1 +20 +Tier3_Linf_FDO 1 +0 +Tier3_Linf_FDF 1 +20 +Tier3_Linf_SHB 1 +0 +Tier3_Linf_SHD 1 +0 +Tier3_Linf_SHC 1 +0 +Tier3_Linf_SHP 1 +0 +Tier3_Linf_SHR 1 +0 +Tier3_Linf_SSK 1 +0 +Tier3_Linf_SB 1 +20 +Tier3_Linf_SP 1 +0 +Tier3_Linf_PIN 1 +20 +Tier3_Linf_REP 1 +0 +Tier3_Linf_WHB 1 +20 +Tier3_Linf_WHS 1 +0 +Tier3_Linf_WHT 1 +20 +Tier3_Linf_WDG 1 +0 +Tier3_Linf_CEP 1 +20 +Tier3_Linf_BFS 1 +0 +Tier3_Linf_BFF 1 +20 +Tier3_Linf_BFD 1 +0 +Tier3_Linf_BG 1 +20 +Tier3_Linf_BMD 1 +0 +Tier3_Linf_BML 1 +20 +Tier3_Linf_BMS 1 +0 +Tier3_Linf_PWN 1 +20 +Tier3_Linf_ZL 1 +20 +Tier3_Linf_BD 1 +20 +Tier3_Linf_MA 1 +20 +Tier3_Linf_MB 1 +20 +Tier3_Linf_SG 1 +20 +Tier3_Linf_BC 1 +20 +Tier3_Linf_ZG 1 +20 +Tier3_Linf_PL 1 +0 +Tier3_Linf_DF 1 +0 +Tier3_Linf_PS 1 +0 +Tier3_Linf_ZM 1 +20 +Tier3_Linf_ZS 1 +20 +Tier3_Linf_DL 1 +0 +Tier3_Linf_DR 1 +0 +Tier3_Linf_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Tier 3 k per sex - from ss rep file growth parameters +Tier3_k_FPL 1 +0 +Tier3_k_FPO 1 +0 +Tier3_k_FPS 1 +0 +Tier3_k_FVD 1 +0 +Tier3_k_FVV 1 +0 +Tier3_k_FVS 1 +0 +Tier3_k_FVB 1 +0 +Tier3_k_FVT 1 +0 +Tier3_k_FVO 1 +0 +Tier3_k_FMM 1 +0 +Tier3_k_FMN 1 +0 +Tier3_k_FBP 1 +1.0 +Tier3_k_FDD 1 +0 +Tier3_k_FDE 1 +0 +Tier3_k_FDS 1 +0 +Tier3_k_FDM 1 +0 +Tier3_k_FDP 1 +0 +Tier3_k_FDB 1 +0 +Tier3_k_FDC 1 +1.0 +Tier3_k_FDO 1 +0 +Tier3_k_FDF 1 +1.0 +Tier3_k_SHB 1 +0 +Tier3_k_SHD 1 +0 +Tier3_k_SHC 1 +0 +Tier3_k_SHP 1 +0 +Tier3_k_SHR 1 +0 +Tier3_k_SSK 1 +0 +Tier3_k_SB 1 +1.0 +Tier3_k_SP 1 +0 +Tier3_k_PIN 1 +1.0 +Tier3_k_REP 1 +0 +Tier3_k_WHB 1 +1.0 +Tier3_k_WHS 1 +0 +Tier3_k_WHT 1 +1.0 +Tier3_k_WDG 1 +0 +Tier3_k_CEP 1 +1.0 +Tier3_k_BFS 1 +0 +Tier3_k_BFF 1 +1.0 +Tier3_k_BFD 1 +0 +Tier3_k_BG 1 +1.0 +Tier3_k_BMD 1 +0 +Tier3_k_BML 1 +1.0 +Tier3_k_BMS 1 +0 +Tier3_k_PWN 1 +1.0 +Tier3_k_ZL 1 +1.0 +Tier3_k_BD 1 +1.0 +Tier3_k_MA 1 +1.0 +Tier3_k_MB 1 +1.0 +Tier3_k_SG 1 +1.0 +Tier3_k_BC 1 +1.0 +Tier3_k_ZG 1 +1.0 +Tier3_k_PL 1 +0 +Tier3_k_DF 1 +0 +Tier3_k_PS 1 +0 +Tier3_k_ZM 1 +1.0 +Tier3_k_ZS 1 +1.0 +Tier3_k_DL 1 +0 +Tier3_k_DR 1 +0 +Tier3_k_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Tier 3 t0 per sex - from ss rep file growth parameters +Tier3_t0_FPL 1 +0 +Tier3_t0_FPO 1 +0 +Tier3_t0_FPS 1 +0 +Tier3_t0_FVD 1 +0 +Tier3_t0_FVV 1 +0 +Tier3_t0_FVS 1 +0 +Tier3_t0_FVB 1 +0 +Tier3_t0_FVT 1 +0 +Tier3_t0_FVO 1 +0 +Tier3_t0_FMM 1 +0 +Tier3_t0_FMN 1 +0 +Tier3_t0_FBP 1 +1.0 +Tier3_t0_FDD 1 +0 +Tier3_t0_FDE 1 +0 +Tier3_t0_FDS 1 +0 +Tier3_t0_FDM 1 +0 +Tier3_t0_FDP 1 +0 +Tier3_t0_FDB 1 +0 +Tier3_t0_FDC 1 +1.0 +Tier3_t0_FDO 1 +0 +Tier3_t0_FDF 1 +1.0 +Tier3_t0_SHB 1 +0 +Tier3_t0_SHD 1 +0 +Tier3_t0_SHC 1 +0 +Tier3_t0_SHP 1 +0 +Tier3_t0_SHR 1 +0 +Tier3_t0_SSK 1 +0 +Tier3_t0_SB 1 +1.0 +Tier3_t0_SP 1 +0 +Tier3_t0_PIN 1 +1.0 +Tier3_t0_REP 1 +0 +Tier3_t0_WHB 1 +1.0 +Tier3_t0_WHS 1 +0 +Tier3_t0_WHT 1 +1.0 +Tier3_t0_WDG 1 +0 +Tier3_t0_CEP 1 +1.0 +Tier3_t0_BFS 1 +0 +Tier3_t0_BFF 1 +1.0 +Tier3_t0_BFD 1 +0 +Tier3_t0_BG 1 +1.0 +Tier3_t0_BMD 1 +0 +Tier3_t0_BML 1 +1.0 +Tier3_t0_BMS 1 +0 +Tier3_t0_PWN 1 +1.0 +Tier3_t0_ZL 1 +1.0 +Tier3_t0_BD 1 +1.0 +Tier3_t0_MA 1 +1.0 +Tier3_t0_MB 1 +1.0 +Tier3_t0_SG 1 +1.0 +Tier3_t0_BC 1 +1.0 +Tier3_t0_ZG 1 +1.0 +Tier3_t0_PL 1 +0 +Tier3_t0_DF 1 +0 +Tier3_t0_PS 1 +0 +Tier3_t0_ZM 1 +1.0 +Tier3_t0_ZS 1 +1.0 +Tier3_t0_DL 1 +0 +Tier3_t0_DR 1 +0 +Tier3_t0_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Tier 3 CCsel years - number of years catch-at-age data to use in CCsel method +CCsel_years_FPL 0 +CCsel_years_FPO 0 +CCsel_years_FPS 0 +CCsel_years_FVD 0 +CCsel_years_FVV 0 +CCsel_years_FVS 0 +CCsel_years_FVB 0 +CCsel_years_FVT 0 +CCsel_years_FVO 0 +CCsel_years_FMM 0 +CCsel_years_FMN 0 +CCsel_years_FBP 5 +CCsel_years_FDD 0 +CCsel_years_FDE 0 +CCsel_years_FDS 0 +CCsel_years_FDM 0 +CCsel_years_FDP 0 +CCsel_years_FDB 0 +CCsel_years_FDC 5 +CCsel_years_FDO 0 +CCsel_years_FDF 5 +CCsel_years_SHB 0 +CCsel_years_SHD 0 +CCsel_years_SHC 0 +CCsel_years_SHP 0 +CCsel_years_SHR 0 +CCsel_years_SSK 0 +CCsel_years_SB 5 +CCsel_years_SP 0 +CCsel_years_PIN 5 +CCsel_years_REP 0 +CCsel_years_WHB 5 +CCsel_years_WHS 0 +CCsel_years_WHT 5 +CCsel_years_WDG 0 +CCsel_years_CEP 5 +CCsel_years_BFS 0 +CCsel_years_BFF 5 +CCsel_years_BFD 0 +CCsel_years_BG 5 +CCsel_years_BMD 0 +CCsel_years_BML 5 +CCsel_years_BMS 0 +CCsel_years_PWN 5 +CCsel_years_ZL 5 +CCsel_years_BD 5 +CCsel_years_MA 5 +CCsel_years_MB 5 +CCsel_years_SG 5 +CCsel_years_BC 5 +CCsel_years_ZG 5 +CCsel_years_PL 0 +CCsel_years_DF 0 +CCsel_years_PS 0 +CCsel_years_ZM 5 +CCsel_years_ZS 5 +CCsel_years_DL 0 +CCsel_years_DR 0 +CCsel_years_DC 0 + +# Tier 4 av time - time period for calc Ccurr : >0 = # years, 0 = same as years for CPUE target +Tier4_avtime_FPL 0 +Tier4_avtime_FPO 0 +Tier4_avtime_FPS 0 +Tier4_avtime_FVD 0 +Tier4_avtime_FVV 0 +Tier4_avtime_FVS 0 +Tier4_avtime_FVB 0 +Tier4_avtime_FVT 0 +Tier4_avtime_FVO 0 +Tier4_avtime_FMM 0 +Tier4_avtime_FMN 0 +Tier4_avtime_FBP 0 +Tier4_avtime_FDD 0 +Tier4_avtime_FDE 0 +Tier4_avtime_FDS 0 +Tier4_avtime_FDM 0 +Tier4_avtime_FDP 0 +Tier4_avtime_FDB 0 +Tier4_avtime_FDC 0 +Tier4_avtime_FDO 0 +Tier4_avtime_FDF 0 +Tier4_avtime_SHB 0 +Tier4_avtime_SHD 0 +Tier4_avtime_SHC 0 +Tier4_avtime_SHP 0 +Tier4_avtime_SHR 0 +Tier4_avtime_SSK 0 +Tier4_avtime_SB 0 +Tier4_avtime_SP 0 +Tier4_avtime_PIN 0 +Tier4_avtime_REP 0 +Tier4_avtime_WHB 0 +Tier4_avtime_WHS 0 +Tier4_avtime_WHT 0 +Tier4_avtime_WDG 0 +Tier4_avtime_CEP 0 +Tier4_avtime_BFS 0 +Tier4_avtime_BFF 0 +Tier4_avtime_BFD 0 +Tier4_avtime_BG 0 +Tier4_avtime_BMD 0 +Tier4_avtime_BML 0 +Tier4_avtime_BMS 0 +Tier4_avtime_PWN 0 +Tier4_avtime_ZL 0 +Tier4_avtime_BD 0 +Tier4_avtime_MA 0 +Tier4_avtime_MB 0 +Tier4_avtime_SG 0 +Tier4_avtime_BC 0 +Tier4_avtime_ZG 0 +Tier4_avtime_PL 0 +Tier4_avtime_DF 0 +Tier4_avtime_PS 0 +Tier4_avtime_ZM 0 +Tier4_avtime_ZS 0 +Tier4_avtime_DL 0 +Tier4_avtime_DR 0 +Tier4_avtime_DC 0 + +# Tier 4 CPUE target start, the year in which to start averaging CPUE target - relative to start of run +Tier4_CPUEyrmin_FPL 0 +Tier4_CPUEyrmin_FPO 0 +Tier4_CPUEyrmin_FPS 0 +Tier4_CPUEyrmin_FVD 0 +Tier4_CPUEyrmin_FVV 0 +Tier4_CPUEyrmin_FVS 0 +Tier4_CPUEyrmin_FVB 0 +Tier4_CPUEyrmin_FVT 0 +Tier4_CPUEyrmin_FVO 0 +Tier4_CPUEyrmin_FMM 0 +Tier4_CPUEyrmin_FMN 0 +Tier4_CPUEyrmin_FBP 9 +Tier4_CPUEyrmin_FDD 0 +Tier4_CPUEyrmin_FDE 0 +Tier4_CPUEyrmin_FDS 0 +Tier4_CPUEyrmin_FDM 0 +Tier4_CPUEyrmin_FDP 0 +Tier4_CPUEyrmin_FDB 0 +Tier4_CPUEyrmin_FDC 9 +Tier4_CPUEyrmin_FDO 0 +Tier4_CPUEyrmin_FDF 9 +Tier4_CPUEyrmin_SHB 0 +Tier4_CPUEyrmin_SHD 0 +Tier4_CPUEyrmin_SHC 0 +Tier4_CPUEyrmin_SHP 0 +Tier4_CPUEyrmin_SHR 0 +Tier4_CPUEyrmin_SSK 0 +Tier4_CPUEyrmin_SB 9 +Tier4_CPUEyrmin_SP 0 +Tier4_CPUEyrmin_PIN 9 +Tier4_CPUEyrmin_REP 0 +Tier4_CPUEyrmin_WHB 9 +Tier4_CPUEyrmin_WHS 0 +Tier4_CPUEyrmin_WHT 9 +Tier4_CPUEyrmin_WDG 0 +Tier4_CPUEyrmin_CEP 9 +Tier4_CPUEyrmin_BFS 0 +Tier4_CPUEyrmin_BFF 9 +Tier4_CPUEyrmin_BFD 0 +Tier4_CPUEyrmin_BG 9 +Tier4_CPUEyrmin_BMD 0 +Tier4_CPUEyrmin_BML 9 +Tier4_CPUEyrmin_BMS 0 +Tier4_CPUEyrmin_PWN 9 +Tier4_CPUEyrmin_ZL 9 +Tier4_CPUEyrmin_BD 9 +Tier4_CPUEyrmin_MA 9 +Tier4_CPUEyrmin_MB 9 +Tier4_CPUEyrmin_SG 9 +Tier4_CPUEyrmin_BC 9 +Tier4_CPUEyrmin_ZG 9 +Tier4_CPUEyrmin_PL 0 +Tier4_CPUEyrmin_DF 0 +Tier4_CPUEyrmin_PS 0 +Tier4_CPUEyrmin_ZM 9 +Tier4_CPUEyrmin_ZS 9 +Tier4_CPUEyrmin_DL 0 +Tier4_CPUEyrmin_DR 0 +Tier4_CPUEyrmin_DC 0 + +# Tier 4 CPUE target end, the year in which to stop averaging CPUE target - relative to start of run +Tier4_CPUEyrmax_FPL 0 +Tier4_CPUEyrmax_FPO 0 +Tier4_CPUEyrmax_FPS 0 +Tier4_CPUEyrmax_FVD 0 +Tier4_CPUEyrmax_FVV 0 +Tier4_CPUEyrmax_FVS 0 +Tier4_CPUEyrmax_FVB 0 +Tier4_CPUEyrmax_FVT 0 +Tier4_CPUEyrmax_FVO 0 +Tier4_CPUEyrmax_FMM 0 +Tier4_CPUEyrmax_FMN 0 +Tier4_CPUEyrmax_FBP 14 +Tier4_CPUEyrmax_FDD 0 +Tier4_CPUEyrmax_FDE 0 +Tier4_CPUEyrmax_FDS 0 +Tier4_CPUEyrmax_FDM 0 +Tier4_CPUEyrmax_FDP 0 +Tier4_CPUEyrmax_FDB 0 +Tier4_CPUEyrmax_FDC 14 +Tier4_CPUEyrmax_FDO 0 +Tier4_CPUEyrmax_FDF 14 +Tier4_CPUEyrmax_SHB 0 +Tier4_CPUEyrmax_SHD 0 +Tier4_CPUEyrmax_SHC 0 +Tier4_CPUEyrmax_SHP 0 +Tier4_CPUEyrmax_SHR 0 +Tier4_CPUEyrmax_SSK 0 +Tier4_CPUEyrmax_SB 14 +Tier4_CPUEyrmax_SP 0 +Tier4_CPUEyrmax_PIN 14 +Tier4_CPUEyrmax_REP 0 +Tier4_CPUEyrmax_WHB 14 +Tier4_CPUEyrmax_WHS 0 +Tier4_CPUEyrmax_WHT 14 +Tier4_CPUEyrmax_WDG 0 +Tier4_CPUEyrmax_CEP 14 +Tier4_CPUEyrmax_BFS 0 +Tier4_CPUEyrmax_BFF 14 +Tier4_CPUEyrmax_BFD 0 +Tier4_CPUEyrmax_BG 14 +Tier4_CPUEyrmax_BMD 0 +Tier4_CPUEyrmax_BML 14 +Tier4_CPUEyrmax_BMS 0 +Tier4_CPUEyrmax_PWN 14 +Tier4_CPUEyrmax_ZL 14 +Tier4_CPUEyrmax_BD 14 +Tier4_CPUEyrmax_MA 14 +Tier4_CPUEyrmax_MB 14 +Tier4_CPUEyrmax_SG 14 +Tier4_CPUEyrmax_BC 14 +Tier4_CPUEyrmax_ZG 14 +Tier4_CPUEyrmax_PL 0 +Tier4_CPUEyrmax_DF 0 +Tier4_CPUEyrmax_PS 0 +Tier4_CPUEyrmax_ZM 14 +Tier4_CPUEyrmax_ZS 14 +Tier4_CPUEyrmax_DL 0 +Tier4_CPUEyrmax_DR 0 +Tier4_CPUEyrmax_DC 0 + + +# Tier 4 CPUE m - number of years to average CPUE over (i.e. for last m years) +Tier4_m_FPL 0 +Tier4_m_FPO 0 +Tier4_m_FPS 0 +Tier4_m_FVD 0 +Tier4_m_FVV 0 +Tier4_m_FVS 0 +Tier4_m_FVB 0 +Tier4_m_FVT 0 +Tier4_m_FVO 0 +Tier4_m_FMM 0 +Tier4_m_FMN 0 +Tier4_m_FBP 4 +Tier4_m_FDD 0 +Tier4_m_FDE 0 +Tier4_m_FDS 0 +Tier4_m_FDM 0 +Tier4_m_FDP 0 +Tier4_m_FDB 0 +Tier4_m_FDC 4 +Tier4_m_FDO 0 +Tier4_m_FDF 4 +Tier4_m_SHB 0 +Tier4_m_SHD 0 +Tier4_m_SHC 0 +Tier4_m_SHP 0 +Tier4_m_SHR 0 +Tier4_m_SSK 0 +Tier4_m_SB 4 +Tier4_m_SP 0 +Tier4_m_PIN 4 +Tier4_m_REP 0 +Tier4_m_WHB 4 +Tier4_m_WHS 0 +Tier4_m_WHT 4 +Tier4_m_WDG 0 +Tier4_m_CEP 4 +Tier4_m_BFS 0 +Tier4_m_BFF 4 +Tier4_m_BFD 0 +Tier4_m_BG 4 +Tier4_m_BMD 0 +Tier4_m_BML 4 +Tier4_m_BMS 0 +Tier4_m_PWN 4 +Tier4_m_ZL 4 +Tier4_m_BD 4 +Tier4_m_MA 4 +Tier4_m_MB 4 +Tier4_m_SG 4 +Tier4_m_BC 4 +Tier4_m_ZG 4 +Tier4_m_PL 0 +Tier4_m_DF 0 +Tier4_m_PS 0 +Tier4_m_ZM 4 +Tier4_m_ZS 4 +Tier4_m_DL 0 +Tier4_m_DR 0 +Tier4_m_DC 0 + +# Tier 4 CPUE maxmult, proportion CPUEmax is above CPUEtarg +Tier4_Cmaxmult_FPL 0 +Tier4_Cmaxmult_FPO 0 +Tier4_Cmaxmult_FPS 0 +Tier4_Cmaxmult_FVD 0 +Tier4_Cmaxmult_FVV 0 +Tier4_Cmaxmult_FVS 0 +Tier4_Cmaxmult_FVB 0 +Tier4_Cmaxmult_FVT 0 +Tier4_Cmaxmult_FVO 0 +Tier4_Cmaxmult_FMM 0 +Tier4_Cmaxmult_FMN 0 +Tier4_Cmaxmult_FBP 0.25 +Tier4_Cmaxmult_FDD 0 +Tier4_Cmaxmult_FDE 0 +Tier4_Cmaxmult_FDS 0 +Tier4_Cmaxmult_FDM 0 +Tier4_Cmaxmult_FDP 0 +Tier4_Cmaxmult_FDB 0 +Tier4_Cmaxmult_FDC 0.25 +Tier4_Cmaxmult_FDO 0 +Tier4_Cmaxmult_FDF 0.25 +Tier4_Cmaxmult_SHB 0 +Tier4_Cmaxmult_SHD 0 +Tier4_Cmaxmult_SHC 0 +Tier4_Cmaxmult_SHP 0 +Tier4_Cmaxmult_SHR 0 +Tier4_Cmaxmult_SSK 0 +Tier4_Cmaxmult_SB 0.25 +Tier4_Cmaxmult_SP 0 +Tier4_Cmaxmult_PIN 0.25 +Tier4_Cmaxmult_REP 0 +Tier4_Cmaxmult_WHB 0.25 +Tier4_Cmaxmult_WHS 0 +Tier4_Cmaxmult_WHT 0.25 +Tier4_Cmaxmult_WDG 0 +Tier4_Cmaxmult_CEP 0.25 +Tier4_Cmaxmult_BFS 0 +Tier4_Cmaxmult_BFF 0.25 +Tier4_Cmaxmult_BFD 0 +Tier4_Cmaxmult_BG 0.25 +Tier4_Cmaxmult_BMD 0 +Tier4_Cmaxmult_BML 0.25 +Tier4_Cmaxmult_BMS 0 +Tier4_Cmaxmult_PWN 0.25 +Tier4_Cmaxmult_ZL 0.25 +Tier4_Cmaxmult_BD 0.25 +Tier4_Cmaxmult_MA 0.25 +Tier4_Cmaxmult_MB 0.25 +Tier4_Cmaxmult_SG 0.25 +Tier4_Cmaxmult_BC 0.25 +Tier4_Cmaxmult_ZG 0.25 +Tier4_Cmaxmult_PL 0 +Tier4_Cmaxmult_DF 0 +Tier4_Cmaxmult_PS 0 +Tier4_Cmaxmult_ZM 0.25 +Tier4_Cmaxmult_ZS 0.25 +Tier4_Cmaxmult_DL 0 +Tier4_Cmaxmult_DR 0 +Tier4_Cmaxmult_DC 0 + +# Tier 4 alpha +Tier4_alpha_FPL 0 +Tier4_alpha_FPO 0 +Tier4_alpha_FPS 0 +Tier4_alpha_FVD 0 +Tier4_alpha_FVV 0 +Tier4_alpha_FVS 0 +Tier4_alpha_FVB 0 +Tier4_alpha_FVT 0 +Tier4_alpha_FVO 0 +Tier4_alpha_FMM 0 +Tier4_alpha_FMN 0 +Tier4_alpha_FBP 1 +Tier4_alpha_FDD 0 +Tier4_alpha_FDE 0 +Tier4_alpha_FDS 0 +Tier4_alpha_FDM 0 +Tier4_alpha_FDP 0 +Tier4_alpha_FDB 0 +Tier4_alpha_FDC 1 +Tier4_alpha_FDO 0 +Tier4_alpha_FDF 1 +Tier4_alpha_SHB 0 +Tier4_alpha_SHD 0 +Tier4_alpha_SHC 0 +Tier4_alpha_SHP 0 +Tier4_alpha_SHR 0 +Tier4_alpha_SSK 0 +Tier4_alpha_SB 1 +Tier4_alpha_SP 0 +Tier4_alpha_PIN 1 +Tier4_alpha_REP 0 +Tier4_alpha_WHB 1 +Tier4_alpha_WHS 0 +Tier4_alpha_WHT 1 +Tier4_alpha_WDG 0 +Tier4_alpha_CEP 1 +Tier4_alpha_BFS 0 +Tier4_alpha_BFF 1 +Tier4_alpha_BFD 0 +Tier4_alpha_BG 1 +Tier4_alpha_BMD 0 +Tier4_alpha_BML 1 +Tier4_alpha_BMS 0 +Tier4_alpha_PWN 1 +Tier4_alpha_ZL 1 +Tier4_alpha_BD 1 +Tier4_alpha_MA 1 +Tier4_alpha_MB 1 +Tier4_alpha_SG 1 +Tier4_alpha_BC 1 +Tier4_alpha_ZG 1 +Tier4_alpha_PL 0 +Tier4_alpha_DF 0 +Tier4_alpha_PS 0 +Tier4_alpha_ZM 1 +Tier4_alpha_ZS 1 +Tier4_alpha_DL 0 +Tier4_alpha_DR 0 +Tier4_alpha_DC 0 + +# Tier 4 Bo correction of reference CPUE +# Get 0.5 scalar if thought to be > B0.7 during reference period +Tier4_Bo_correct_FPL 0 +Tier4_Bo_correct_FPO 0 +Tier4_Bo_correct_FPS 0 +Tier4_Bo_correct_FVD 0 +Tier4_Bo_correct_FVV 0 +Tier4_Bo_correct_FVS 0 +Tier4_Bo_correct_FVB 0 +Tier4_Bo_correct_FVT 0 +Tier4_Bo_correct_FVO 0 +Tier4_Bo_correct_FMM 0 +Tier4_Bo_correct_FMN 0 +Tier4_Bo_correct_FBP 1 +Tier4_Bo_correct_FDD 0 +Tier4_Bo_correct_FDE 0 +Tier4_Bo_correct_FDS 0 +Tier4_Bo_correct_FDM 0 +Tier4_Bo_correct_FDP 0 +Tier4_Bo_correct_FDB 0 +Tier4_Bo_correct_FDC 1 +Tier4_Bo_correct_FDO 0 +Tier4_Bo_correct_FDF 1 +Tier4_Bo_correct_SHB 0 +Tier4_Bo_correct_SHD 0 +Tier4_Bo_correct_SHC 0 +Tier4_Bo_correct_SHP 0 +Tier4_Bo_correct_SHR 0 +Tier4_Bo_correct_SSK 0 +Tier4_Bo_correct_SB 1 +Tier4_Bo_correct_SP 0 +Tier4_Bo_correct_PIN 1 +Tier4_Bo_correct_REP 0 +Tier4_Bo_correct_WHB 1 +Tier4_Bo_correct_WHS 0 +Tier4_Bo_correct_WHT 1 +Tier4_Bo_correct_WDG 0 +Tier4_Bo_correct_CEP 1 +Tier4_Bo_correct_BFS 0 +Tier4_Bo_correct_BFF 1 +Tier4_Bo_correct_BFD 0 +Tier4_Bo_correct_BG 1 +Tier4_Bo_correct_BMD 0 +Tier4_Bo_correct_BML 1 +Tier4_Bo_correct_BMS 0 +Tier4_Bo_correct_PWN 1 +Tier4_Bo_correct_ZL 1 +Tier4_Bo_correct_BD 1 +Tier4_Bo_correct_MA 1 +Tier4_Bo_correct_MB 1 +Tier4_Bo_correct_SG 1 +Tier4_Bo_correct_BC 1 +Tier4_Bo_correct_ZG 1 +Tier4_Bo_correct_PL 0 +Tier4_Bo_correct_DF 0 +Tier4_Bo_correct_PS 0 +Tier4_Bo_correct_ZM 1 +Tier4_Bo_correct_ZS 1 +Tier4_Bo_correct_DL 0 +Tier4_Bo_correct_DR 0 +Tier4_Bo_correct_DC 0 + + +## Tier 5 parameters +# Tier 5 length - reference length above which to do calcs,length of 95% selection +Tier5_length_FPL 0 +Tier5_length_FPO 0 +Tier5_length_FPS 0 +Tier5_length_FVD 0 +Tier5_length_FVV 0 +Tier5_length_FVS 0 +Tier5_length_FVB 0 +Tier5_length_FVT 0 +Tier5_length_FVO 0 +Tier5_length_FMM 0 +Tier5_length_FMN 0 +Tier5_length_FBP 20 +Tier5_length_FDD 0 +Tier5_length_FDE 0 +Tier5_length_FDS 0 +Tier5_length_FDM 0 +Tier5_length_FDP 0 +Tier5_length_FDB 0 +Tier5_length_FDC 20 +Tier5_length_FDO 0 +Tier5_length_FDF 20 +Tier5_length_SHB 0 +Tier5_length_SHD 0 +Tier5_length_SHC 0 +Tier5_length_SHP 0 +Tier5_length_SHR 0 +Tier5_length_SSK 0 +Tier5_length_SB 20 +Tier5_length_SP 0 +Tier5_length_PIN 20 +Tier5_length_REP 0 +Tier5_length_WHB 20 +Tier5_length_WHS 0 +Tier5_length_WHT 20 +Tier5_length_WDG 0 +Tier5_length_CEP 20 +Tier5_length_BFS 0 +Tier5_length_BFF 20 +Tier5_length_BFD 0 +Tier5_length_BG 20 +Tier5_length_BMD 0 +Tier5_length_BML 20 +Tier5_length_BMS 0 +Tier5_length_PWN 20 +Tier5_length_ZL 20 +Tier5_length_BD 20 +Tier5_length_MA 20 +Tier5_length_MB 20 +Tier5_length_SG 20 +Tier5_length_BC 20 +Tier5_length_ZG 20 +Tier5_length_PL 0 +Tier5_length_DF 0 +Tier5_length_PS 0 +Tier5_length_ZM 20 +Tier5_length_ZS 20 +Tier5_length_DL 0 +Tier5_length_DR 0 +Tier5_length_DC 0 + +# Tier 5 S50, knife-edge sel (50%) for Fref calcs +Tier5_S50_FPL 0 +Tier5_S50_FPO 0 +Tier5_S50_FPS 0 +Tier5_S50_FVD 0 +Tier5_S50_FVV 0 +Tier5_S50_FVS 0 +Tier5_S50_FVB 0 +Tier5_S50_FVT 0 +Tier5_S50_FVO 0 +Tier5_S50_FMM 0 +Tier5_S50_FMN 0 +Tier5_S50_FBP 30 +Tier5_S50_FDD 0 +Tier5_S50_FDE 0 +Tier5_S50_FDS 0 +Tier5_S50_FDM 0 +Tier5_S50_FDP 0 +Tier5_S50_FDB 0 +Tier5_S50_FDC 30 +Tier5_S50_FDO 0 +Tier5_S50_FDF 30 +Tier5_S50_SHB 0 +Tier5_S50_SHD 0 +Tier5_S50_SHC 0 +Tier5_S50_SHP 0 +Tier5_S50_SHR 0 +Tier5_S50_SSK 0 +Tier5_S50_SB 30 +Tier5_S50_SP 0 +Tier5_S50_PIN 30 +Tier5_S50_REP 0 +Tier5_S50_WHB 30 +Tier5_S50_WHS 0 +Tier5_S50_WHT 30 +Tier5_S50_WDG 0 +Tier5_S50_CEP 30 +Tier5_S50_BFS 0 +Tier5_S50_BFF 30 +Tier5_S50_BFD 0 +Tier5_S50_BG 30 +Tier5_S50_BMD 0 +Tier5_S50_BML 30 +Tier5_S50_BMS 0 +Tier5_S50_PWN 30 +Tier5_S50_ZL 30 +Tier5_S50_BD 30 +Tier5_S50_MA 30 +Tier5_S50_MB 30 +Tier5_S50_SG 30 +Tier5_S50_BC 30 +Tier5_S50_ZG 30 +Tier5_S50_PL 0 +Tier5_S50_DF 0 +Tier5_S50_PS 0 +Tier5_S50_ZM 30 +Tier5_S50_ZS 30 +Tier5_S50_DL 0 +Tier5_S50_DR 0 +Tier5_S50_DC 0 + +# Tier 5 cv of length at age +Tier5_cv_FPL 0 +Tier5_cv_FPO 0 +Tier5_cv_FPS 0 +Tier5_cv_FVD 0 +Tier5_cv_FVV 0 +Tier5_cv_FVS 0 +Tier5_cv_FVB 0 +Tier5_cv_FVT 0 +Tier5_cv_FVO 0 +Tier5_cv_FMM 0 +Tier5_cv_FMN 0 +Tier5_cv_FBP 0 +Tier5_cv_FDD 0 +Tier5_cv_FDE 0 +Tier5_cv_FDS 0 +Tier5_cv_FDM 0 +Tier5_cv_FDP 0 +Tier5_cv_FDB 0 +Tier5_cv_FDC 0 +Tier5_cv_FDO 0 +Tier5_cv_FDF 0 +Tier5_cv_SHB 0 +Tier5_cv_SHD 0 +Tier5_cv_SHC 0 +Tier5_cv_SHP 0 +Tier5_cv_SHR 0 +Tier5_cv_SSK 0 +Tier5_cv_SB 0 +Tier5_cv_SP 0 +Tier5_cv_PIN 0 +Tier5_cv_REP 0 +Tier5_cv_WHB 0 +Tier5_cv_WHS 0 +Tier5_cv_WHT 0 +Tier5_cv_WDG 0 +Tier5_cv_CEP 0 +Tier5_cv_BFS 0 +Tier5_cv_BFF 0 +Tier5_cv_BFD 0 +Tier5_cv_BG 0 +Tier5_cv_BMD 0 +Tier5_cv_BML 0 +Tier5_cv_BMS 0 +Tier5_cv_PWN 0 +Tier5_cv_ZL 0 +Tier5_cv_BD 0 +Tier5_cv_MA 0 +Tier5_cv_MB 0 +Tier5_cv_SG 0 +Tier5_cv_BC 0 +Tier5_cv_ZG 0 +Tier5_cv_PL 0 +Tier5_cv_DF 0 +Tier5_cv_PS 0 +Tier5_cv_ZM 0 +Tier5_cv_ZS 0 +Tier5_cv_DL 0 +Tier5_cv_DR 0 +Tier5_cv_DC 0 + + +# Tier 5 p, asymmetry parameter p = 1 Schaefer, p = 0.00000001 Fox +Tier5_p_FPL 0 +Tier5_p_FPO 0 +Tier5_p_FPS 0 +Tier5_p_FVD 0 +Tier5_p_FVV 0 +Tier5_p_FVS 0 +Tier5_p_FVB 0 +Tier5_p_FVT 0 +Tier5_p_FVO 0 +Tier5_p_FMM 0 +Tier5_p_FMN 0 +Tier5_p_FBP 1 +Tier5_p_FDD 0 +Tier5_p_FDE 0 +Tier5_p_FDS 0 +Tier5_p_FDM 0 +Tier5_p_FDP 0 +Tier5_p_FDB 0 +Tier5_p_FDC 1 +Tier5_p_FDO 0 +Tier5_p_FDF 1 +Tier5_p_SHB 0 +Tier5_p_SHD 0 +Tier5_p_SHC 0 +Tier5_p_SHP 0 +Tier5_p_SHR 0 +Tier5_p_SSK 0 +Tier5_p_SB 1 +Tier5_p_SP 0 +Tier5_p_PIN 1 +Tier5_p_REP 0 +Tier5_p_WHB 1 +Tier5_p_WHS 0 +Tier5_p_WHT 1 +Tier5_p_WDG 0 +Tier5_p_CEP 1 +Tier5_p_BFS 0 +Tier5_p_BFF 1 +Tier5_p_BFD 0 +Tier5_p_BG 1 +Tier5_p_BMD 0 +Tier5_p_BML 1 +Tier5_p_BMS 0 +Tier5_p_PWN 1 +Tier5_p_ZL 1 +Tier5_p_BD 1 +Tier5_p_MA 1 +Tier5_p_MB 1 +Tier5_p_SG 1 +Tier5_p_BC 1 +Tier5_p_ZG 1 +Tier5_p_PL 0 +Tier5_p_DF 0 +Tier5_p_PS 0 +Tier5_p_ZM 1 +Tier5_p_ZS 1 +Tier5_p_DL 0 +Tier5_p_DR 0 +Tier5_p_DC 0 + +# Tier 5 fleet, which fleet's CPUE to use in SP model, or length to use in Avlen +Tier5_flt_FPL 0 +Tier5_flt_FPO 0 +Tier5_flt_FPS 0 +Tier5_flt_FVD 0 +Tier5_flt_FVV 0 +Tier5_flt_FVS 0 +Tier5_flt_FVB 0 +Tier5_flt_FVT 0 +Tier5_flt_FVO 0 +Tier5_flt_FMM 0 +Tier5_flt_FMN 0 +Tier5_flt_FBP 1 +Tier5_flt_FDD 0 +Tier5_flt_FDE 0 +Tier5_flt_FDS 0 +Tier5_flt_FDM 0 +Tier5_flt_FDP 0 +Tier5_flt_FDB 0 +Tier5_flt_FDC 1 +Tier5_flt_FDO 0 +Tier5_flt_FDF 1 +Tier5_flt_SHB 0 +Tier5_flt_SHD 0 +Tier5_flt_SHC 0 +Tier5_flt_SHP 0 +Tier5_flt_SHR 0 +Tier5_flt_SSK 0 +Tier5_flt_SB 1 +Tier5_flt_SP 0 +Tier5_flt_PIN 1 +Tier5_flt_REP 0 +Tier5_flt_WHB 1 +Tier5_flt_WHS 0 +Tier5_flt_WHT 1 +Tier5_flt_WDG 0 +Tier5_flt_CEP 1 +Tier5_flt_BFS 0 +Tier5_flt_BFF 1 +Tier5_flt_BFD 0 +Tier5_flt_BG 1 +Tier5_flt_BMD 0 +Tier5_flt_BML 1 +Tier5_flt_BMS 0 +Tier5_flt_PWN 1 +Tier5_flt_ZL 1 +Tier5_flt_BD 1 +Tier5_flt_MA 1 +Tier5_flt_MB 1 +Tier5_flt_SG 1 +Tier5_flt_BC 1 +Tier5_flt_ZG 1 +Tier5_flt_PL 0 +Tier5_flt_DF 0 +Tier5_flt_PS 0 +Tier5_flt_ZM 1 +Tier5_flt_ZS 1 +Tier5_flt_DL 0 +Tier5_flt_DR 0 +Tier5_flt_DC 0 + +# Tier 5 region, which region's CPUE to use in SP model, or length to use in Avlen +Tier5_reg_FPL 0 +Tier5_reg_FPO 0 +Tier5_reg_FPS 0 +Tier5_reg_FVD 0 +Tier5_reg_FVV 0 +Tier5_reg_FVS 0 +Tier5_reg_FVB 0 +Tier5_reg_FVT 0 +Tier5_reg_FVO 0 +Tier5_reg_FMM 0 +Tier5_reg_FMN 0 +Tier5_reg_FBP 0 +Tier5_reg_FDD 0 +Tier5_reg_FDE 0 +Tier5_reg_FDS 0 +Tier5_reg_FDM 0 +Tier5_reg_FDP 0 +Tier5_reg_FDB 0 +Tier5_reg_FDC 0 +Tier5_reg_FDO 0 +Tier5_reg_FDF 0 +Tier5_reg_SHB 0 +Tier5_reg_SHD 0 +Tier5_reg_SHC 0 +Tier5_reg_SHP 0 +Tier5_reg_SHR 0 +Tier5_reg_SSK 0 +Tier5_reg_SB 0 +Tier5_reg_SP 0 +Tier5_reg_PIN 0 +Tier5_reg_REP 0 +Tier5_reg_WHB 0 +Tier5_reg_WHS 0 +Tier5_reg_WHT 0 +Tier5_reg_WDG 0 +Tier5_reg_CEP 0 +Tier5_reg_BFS 0 +Tier5_reg_BFF 0 +Tier5_reg_BFD 0 +Tier5_reg_BG 0 +Tier5_reg_BMD 0 +Tier5_reg_BML 0 +Tier5_reg_BMS 0 +Tier5_reg_PWN 0 +Tier5_reg_ZL 0 +Tier5_reg_BD 0 +Tier5_reg_MA 0 +Tier5_reg_MB 0 +Tier5_reg_SG 0 +Tier5_reg_BC 0 +Tier5_reg_ZG 0 +Tier5_reg_PL 0 +Tier5_reg_DF 0 +Tier5_reg_PS 0 +Tier5_reg_ZM 0 +Tier5_reg_ZS 0 +Tier5_reg_DL 0 +Tier5_reg_DR 0 +Tier5_reg_DC 0 + +# Tier 5 initial value B0 plus lower and upper bounds +Tier5_Bstart_FPL 3 +0 0 0 +Tier5_Bstart_FPO 3 +0 0 0 +Tier5_Bstart_FPS 3 +0 0 0 +Tier5_Bstart_FVD 3 +0 0 0 +Tier5_Bstart_FVV 3 +0 0 0 +Tier5_Bstart_FVS 3 +0 0 0 +Tier5_Bstart_FVB 3 +0 0 0 +Tier5_Bstart_FVT 3 +0 0 0 +Tier5_Bstart_FVO 3 +0 0 0 +Tier5_Bstart_FMM 3 +0 0 0 +Tier5_Bstart_FMN 3 +0 0 0 +Tier5_Bstart_FBP 3 +100.0 100.0 100.0 +Tier5_Bstart_FDD 3 +0 0 0 +Tier5_Bstart_FDE 3 +0 0 0 +Tier5_Bstart_FDS 3 +0 0 0 +Tier5_Bstart_FDM 3 +0 0 0 +Tier5_Bstart_FDP 3 +0 0 0 +Tier5_Bstart_FDB 3 +0 0 0 +Tier5_Bstart_FDC 3 +100.0 100.0 100.0 +Tier5_Bstart_FDO 3 +0 0 0 +Tier5_Bstart_FDF 3 +100.0 100.0 100.0 +Tier5_Bstart_SHB 3 +0 0 0 +Tier5_Bstart_SHD 3 +0 0 0 +Tier5_Bstart_SHC 3 +0 0 0 +Tier5_Bstart_SHP 3 +0 0 0 +Tier5_Bstart_SHR 3 +0 0 0 +Tier5_Bstart_SSK 3 +0 0 0 +Tier5_Bstart_SB 3 +100.0 100.0 100.0 +Tier5_Bstart_SP 3 +0 0 0 +Tier5_Bstart_PIN 3 +100.0 100.0 100.0 +Tier5_Bstart_REP 3 +0 0 0 +Tier5_Bstart_WHB 3 +100.0 100.0 100.0 +Tier5_Bstart_WHS 3 +0 0 0 +Tier5_Bstart_WHT 3 +100.0 100.0 100.0 +Tier5_Bstart_WDG 3 +0 0 0 +Tier5_Bstart_CEP 3 +100.0 100.0 100.0 +Tier5_Bstart_BFS 3 +0 0 0 +Tier5_Bstart_BFF 3 +100.0 100.0 100.0 +Tier5_Bstart_BFD 3 +0 0 0 +Tier5_Bstart_BG 3 +100.0 100.0 100.0 +Tier5_Bstart_BMD 3 +0 0 0 +Tier5_Bstart_BML 3 +100.0 100.0 100.0 +Tier5_Bstart_BMS 3 +0 0 0 +Tier5_Bstart_PWN 3 +100.0 100.0 100.0 +Tier5_Bstart_ZL 3 +100.0 100.0 100.0 +Tier5_Bstart_BD 3 +100.0 100.0 100.0 +Tier5_Bstart_MA 3 +100.0 100.0 100.0 +Tier5_Bstart_MB 3 +100.0 100.0 100.0 +Tier5_Bstart_SG 3 +100.0 100.0 100.0 +Tier5_Bstart_BC 3 +100.0 100.0 100.0 +Tier5_Bstart_ZG 3 +100.0 100.0 100.0 +Tier5_Bstart_PL 3 +0 0 0 +Tier5_Bstart_DF 3 +0 0 0 +Tier5_Bstart_PS 3 +0 0 0 +Tier5_Bstart_ZM 3 +100.0 100.0 100.0 +Tier5_Bstart_ZS 3 +100.0 100.0 100.0 +Tier5_Bstart_DL 3 +0 0 0 +Tier5_Bstart_DR 3 +0 0 0 +Tier5_Bstart_DC 3 +0 0 0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Tier 5 r, initial value of r plus lower and upper bounds +Tier5_r_FPL 3 +0 0 0 +Tier5_r_FPO 3 +0 0 0 +Tier5_r_FPS 3 +0 0 0 +Tier5_r_FVD 3 +0 0 0 +Tier5_r_FVV 3 +0 0 0 +Tier5_r_FVS 3 +0 0 0 +Tier5_r_FVB 3 +0 0 0 +Tier5_r_FVT 3 +0 0 0 +Tier5_r_FVO 3 +0 0 0 +Tier5_r_FMM 3 +0 0 0 +Tier5_r_FMN 3 +0 0 0 +Tier5_r_FBP 3 +1.0 1.0 1.0 +Tier5_r_FDD 3 +0 0 0 +Tier5_r_FDE 3 +0 0 0 +Tier5_r_FDS 3 +0 0 0 +Tier5_r_FDM 3 +0 0 0 +Tier5_r_FDP 3 +0 0 0 +Tier5_r_FDB 3 +0 0 0 +Tier5_r_FDC 3 +1.0 1.0 1.0 +Tier5_r_FDO 3 +0 0 0 +Tier5_r_FDF 3 +1.0 1.0 1.0 +Tier5_r_SHB 3 +0 0 0 +Tier5_r_SHD 3 +0 0 0 +Tier5_r_SHC 3 +0 0 0 +Tier5_r_SHP 3 +0 0 0 +Tier5_r_SHR 3 +0 0 0 +Tier5_r_SSK 3 +0 0 0 +Tier5_r_SB 3 +1.0 1.0 1.0 +Tier5_r_SP 3 +0 0 0 +Tier5_r_PIN 3 +1.0 1.0 1.0 +Tier5_r_REP 3 +0 0 0 +Tier5_r_WHB 3 +1.0 1.0 1.0 +Tier5_r_WHS 3 +0 0 0 +Tier5_r_WHT 3 +1.0 1.0 1.0 +Tier5_r_WDG 3 +0 0 0 +Tier5_r_CEP 3 +1.0 1.0 1.0 +Tier5_r_BFS 3 +0 0 0 +Tier5_r_BFF 3 +1.0 1.0 1.0 +Tier5_r_BFD 3 +0 0 0 +Tier5_r_BG 3 +1.0 1.0 1.0 +Tier5_r_BMD 3 +0 0 0 +Tier5_r_BML 3 +1.0 1.0 1.0 +Tier5_r_BMS 3 +0 0 0 +Tier5_r_PWN 3 +1.0 1.0 1.0 +Tier5_r_ZL 3 +1.0 1.0 1.0 +Tier5_r_BD 3 +1.0 1.0 1.0 +Tier5_r_MA 3 +1.0 1.0 1.0 +Tier5_r_MB 3 +1.0 1.0 1.0 +Tier5_r_SG 3 +1.0 1.0 1.0 +Tier5_r_BC 3 +1.0 1.0 1.0 +Tier5_r_ZG 3 +1.0 1.0 1.0 +Tier5_r_PL 3 +0 0 0 +Tier5_r_DF 3 +0 0 0 +Tier5_r_PS 3 +0 0 0 +Tier5_r_ZM 3 +1.0 1.0 1.0 +Tier5_r_ZS 3 +1.0 1.0 1.0 +Tier5_r_DL 3 +0 0 0 +Tier5_r_DR 3 +0 0 0 +Tier5_r_DC 3 +0 0 0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Tier 5 assumed selectivity +Tier5sel_FPL 0 +Tier5sel_FPO 0 +Tier5sel_FPS 0 +Tier5sel_FVD 0 +Tier5sel_FVV 0 +Tier5sel_FVS 0 +Tier5sel_FVB 0 +Tier5sel_FVT 0 +Tier5sel_FVO 0 +Tier5sel_FMM 0 +Tier5sel_FMN 0 +Tier5sel_FBP 0.8 +Tier5sel_FDD 0 +Tier5sel_FDE 0 +Tier5sel_FDS 0 +Tier5sel_FDM 0 +Tier5sel_FDP 0 +Tier5sel_FDB 0 +Tier5sel_FDC 0.8 +Tier5sel_FDO 0 +Tier5sel_FDF 0.8 +Tier5sel_SHB 0 +Tier5sel_SHD 0 +Tier5sel_SHC 0 +Tier5sel_SHP 0 +Tier5sel_SHR 0 +Tier5sel_SSK 0 +Tier5sel_SB 0.8 +Tier5sel_SP 0 +Tier5sel_PIN 0.8 +Tier5sel_REP 0 +Tier5sel_WHB 0.8 +Tier5sel_WHS 0 +Tier5sel_WHT 0.8 +Tier5sel_WDG 0 +Tier5sel_CEP 0.8 +Tier5sel_BFS 0 +Tier5sel_BFF 0.8 +Tier5sel_BFD 0 +Tier5sel_BG 0.8 +Tier5sel_BMD 0 +Tier5sel_BML 0.8 +Tier5sel_BMS 0 +Tier5sel_PWN 0.8 +Tier5sel_ZL 0.8 +Tier5sel_BD 0.8 +Tier5sel_MA 0.8 +Tier5sel_MB 0.8 +Tier5sel_SG 0.8 +Tier5sel_BC 0.8 +Tier5sel_ZG 0.8 +Tier5sel_PL 0 +Tier5sel_DF 0 +Tier5sel_PS 0 +Tier5sel_ZM 0.8 +Tier5sel_ZS 0.8 +Tier5sel_DL 0 +Tier5sel_DR 0 +Tier5sel_DC 0 + + +# Tier 5 assumed catchability +Tier5q_FPL 0 +Tier5q_FPO 0 +Tier5q_FPS 0 +Tier5q_FVD 0 +Tier5q_FVV 0 +Tier5q_FVS 0 +Tier5q_FVB 0 +Tier5q_FVT 0 +Tier5q_FVO 0 +Tier5q_FMM 0 +Tier5q_FMN 0 +Tier5q_FBP 0.3 +Tier5q_FDD 0 +Tier5q_FDE 0 +Tier5q_FDS 0 +Tier5q_FDM 0 +Tier5q_FDP 0 +Tier5q_FDB 0 +Tier5q_FDC 0.3 +Tier5q_FDO 0 +Tier5q_FDF 0.3 +Tier5q_SHB 0 +Tier5q_SHD 0 +Tier5q_SHC 0 +Tier5q_SHP 0 +Tier5q_SHR 0 +Tier5q_SSK 0 +Tier5q_SB 0.3 +Tier5q_SP 0 +Tier5q_PIN 0.3 +Tier5q_REP 0 +Tier5q_WHB 0.3 +Tier5q_WHS 0 +Tier5q_WHT 0.3 +Tier5q_WDG 0 +Tier5q_CEP 0.3 +Tier5q_BFS 0 +Tier5q_BFF 0.3 +Tier5q_BFD 0 +Tier5q_BG 0.3 +Tier5q_BMD 0 +Tier5q_BML 0.3 +Tier5q_BMS 0 +Tier5q_PWN 0.3 +Tier5q_ZL 0.3 +Tier5q_BD 0.3 +Tier5q_MA 0.3 +Tier5q_MB 0.3 +Tier5q_SG 0.3 +Tier5q_BC 0.3 +Tier5q_ZG 0.3 +Tier5q_PL 0 +Tier5q_DF 0 +Tier5q_PS 0 +Tier5q_ZM 0.3 +Tier5q_ZS 0.3 +Tier5q_DL 0 +Tier5q_DR 0 +Tier5q_DC 0 + + +tier5JensenConst 1.65 # As of Jensen 1996 in Zhou et al 2011 SAFE multispecies data poor paper +tier5limscalar 1.5 # As of Zhou et al 2011 SAFE multispecies data poor paper +tier5omega 0.91 # As of Zhou et al 2011 SAFE multispecies data poor paper +tier5DCACscalar 0.4 # As of MacCall 2009 DCAC +tier5DCACconst 0.75 # As of MacCall 2009 DCAC + + +## Tier 6 rules +tier6_to_tier4 0 +delTAE 0.2 + + +# Trigger response scenario +TriggerResponseScen_FPL 0 +TriggerResponseScen_FPO 0 +TriggerResponseScen_FPS 0 +TriggerResponseScen_FVD 0 +TriggerResponseScen_FVV 0 +TriggerResponseScen_FVS 0 +TriggerResponseScen_FVB 0 +TriggerResponseScen_FVT 0 +TriggerResponseScen_FVO 0 +TriggerResponseScen_FMM 0 +TriggerResponseScen_FMN 0 +TriggerResponseScen_FBP 1 +TriggerResponseScen_FDD 0 +TriggerResponseScen_FDE 0 +TriggerResponseScen_FDS 0 +TriggerResponseScen_FDM 0 +TriggerResponseScen_FDP 0 +TriggerResponseScen_FDB 0 +TriggerResponseScen_FDC 1 +TriggerResponseScen_FDO 0 +TriggerResponseScen_FDF 1 +TriggerResponseScen_SHB 0 +TriggerResponseScen_SHD 0 +TriggerResponseScen_SHC 0 +TriggerResponseScen_SHP 0 +TriggerResponseScen_SHR 0 +TriggerResponseScen_SSK 0 +TriggerResponseScen_SB 1 +TriggerResponseScen_SP 0 +TriggerResponseScen_PIN 1 +TriggerResponseScen_REP 0 +TriggerResponseScen_WHB 1 +TriggerResponseScen_WHS 0 +TriggerResponseScen_WHT 1 +TriggerResponseScen_WDG 0 +TriggerResponseScen_CEP 1 +TriggerResponseScen_BFS 0 +TriggerResponseScen_BFF 1 +TriggerResponseScen_BFD 0 +TriggerResponseScen_BG 1 +TriggerResponseScen_BMD 0 +TriggerResponseScen_BML 1 +TriggerResponseScen_BMS 0 +TriggerResponseScen_PWN 1 +TriggerResponseScen_ZL 1 +TriggerResponseScen_BD 1 +TriggerResponseScen_MA 1 +TriggerResponseScen_MB 1 +TriggerResponseScen_SG 1 +TriggerResponseScen_BC 1 +TriggerResponseScen_ZG 1 +TriggerResponseScen_PL 0 +TriggerResponseScen_DF 0 +TriggerResponseScen_PS 0 +TriggerResponseScen_ZM 1 +TriggerResponseScen_ZS 1 +TriggerResponseScen_DL 0 +TriggerResponseScen_DR 0 +TriggerResponseScen_DC 0 + + +# Number of trigger points +NumTriggers 3 + +# Identity of triggers +TriggerPoints 3 +0.5 1.0 2.0 + +# Adjustment made to tier6 assessment when fishing restarts (so don't re-trip the trigger again) +RBCadjscalar_FPL 0 +RBCadjscalar_FPO 0 +RBCadjscalar_FPS 0 +RBCadjscalar_FVD 0 +RBCadjscalar_FVV 0 +RBCadjscalar_FVS 0 +RBCadjscalar_FVB 0 +RBCadjscalar_FVT 0 +RBCadjscalar_FVO 0 +RBCadjscalar_FMM 0 +RBCadjscalar_FMN 0 +RBCadjscalar_FBP 0.3 +RBCadjscalar_FDD 0 +RBCadjscalar_FDE 0 +RBCadjscalar_FDS 0 +RBCadjscalar_FDM 0 +RBCadjscalar_FDP 0 +RBCadjscalar_FDB 0 +RBCadjscalar_FDC 0.3 +RBCadjscalar_FDO 0 +RBCadjscalar_FDF 0.3 +RBCadjscalar_SHB 0 +RBCadjscalar_SHD 0 +RBCadjscalar_SHC 0 +RBCadjscalar_SHP 0 +RBCadjscalar_SHR 0 +RBCadjscalar_SSK 0 +RBCadjscalar_SB 0.3 +RBCadjscalar_SP 0 +RBCadjscalar_PIN 0.3 +RBCadjscalar_REP 0 +RBCadjscalar_WHB 0.3 +RBCadjscalar_WHS 0 +RBCadjscalar_WHT 0.3 +RBCadjscalar_WDG 0 +RBCadjscalar_CEP 0.3 +RBCadjscalar_BFS 0 +RBCadjscalar_BFF 0.3 +RBCadjscalar_BFD 0 +RBCadjscalar_BG 0.3 +RBCadjscalar_BMD 0 +RBCadjscalar_BML 0.3 +RBCadjscalar_BMS 0 +RBCadjscalar_PWN 0.3 +RBCadjscalar_ZL 0.3 +RBCadjscalar_BD 0.3 +RBCadjscalar_MA 0.3 +RBCadjscalar_MB 0.3 +RBCadjscalar_SG 0.3 +RBCadjscalar_BC 0.3 +RBCadjscalar_ZG 0.3 +RBCadjscalar_PL 0 +RBCadjscalar_DF 0 +RBCadjscalar_PS 0 +RBCadjscalar_ZM 0.3 +RBCadjscalar_ZS 0.3 +RBCadjscalar_DL 0 +RBCadjscalar_DR 0 +RBCadjscalar_DC 0 + + +# Catchability marking a species as being targeted - so close under tier6 +trigq_FPL 0 +trigq_FPO 0 +trigq_FPS 0 +trigq_FVD 0 +trigq_FVV 0 +trigq_FVS 0 +trigq_FVB 0 +trigq_FVT 0 +trigq_FVO 0 +trigq_FMM 0 +trigq_FMN 0 +trigq_FBP 0.1 +trigq_FDD 0 +trigq_FDE 0 +trigq_FDS 0 +trigq_FDM 0 +trigq_FDP 0 +trigq_FDB 0 +trigq_FDC 0.1 +trigq_FDO 0 +trigq_FDF 0.1 +trigq_SHB 0 +trigq_SHD 0 +trigq_SHC 0 +trigq_SHP 0 +trigq_SHR 0 +trigq_SSK 0 +trigq_SB 0.1 +trigq_SP 0 +trigq_PIN 0.1 +trigq_REP 0 +trigq_WHB 0.1 +trigq_WHS 0 +trigq_WHT 0.1 +trigq_WDG 0 +trigq_CEP 0.1 +trigq_BFS 0 +trigq_BFF 0.1 +trigq_BFD 0 +trigq_BG 0.1 +trigq_BMD 0 +trigq_BML 0.1 +trigq_BMS 0 +trigq_PWN 0.1 +trigq_ZL 0.1 +trigq_BD 0.1 +trigq_MA 0.1 +trigq_MB 0.1 +trigq_SG 0.1 +trigq_BC 0.1 +trigq_ZG 0.1 +trigq_PL 0 +trigq_DF 0 +trigq_PS 0 +trigq_ZM 0.1 +trigq_ZS 0.1 +trigq_DL 0 +trigq_DR 0 +trigq_DC 0 + + +## Tier 7 rules - all from Dowling paper +tier7areachange 0.4 +tier7relarea 0.4 +tier7cpuechange 0.5 +tier7maxcompchange 0.3 +tier7maxannchange 0.1 +tier7period 3 + +# Post assessment rule: 1=rule 1 (additive), 2=rule 2(multiplicative), 0=none +PostRule_FPL 0 +PostRule_FPO 0 +PostRule_FPS 0 +PostRule_FVD 0 +PostRule_FVV 0 +PostRule_FVS 0 +PostRule_FVB 0 +PostRule_FVT 0 +PostRule_FVO 0 +PostRule_FMM 0 +PostRule_FMN 0 +PostRule_FBP 0 +PostRule_FDD 0 +PostRule_FDE 0 +PostRule_FDS 0 +PostRule_FDM 0 +PostRule_FDP 0 +PostRule_FDB 0 +PostRule_FDC 0 +PostRule_FDO 0 +PostRule_FDF 0 +PostRule_SHB 0 +PostRule_SHD 0 +PostRule_SHC 0 +PostRule_SHP 0 +PostRule_SHR 0 +PostRule_SSK 0 +PostRule_SB 0 +PostRule_SP 0 +PostRule_PIN 0 +PostRule_REP 0 +PostRule_WHB 0 +PostRule_WHS 0 +PostRule_WHT 0 +PostRule_WDG 0 +PostRule_CEP 0 +PostRule_BFS 0 +PostRule_BFF 0 +PostRule_BFD 0 +PostRule_BG 0 +PostRule_BMD 0 +PostRule_BML 0 +PostRule_BMS 0 +PostRule_PWN 0 +PostRule_ZL 0 +PostRule_BD 0 +PostRule_MA 0 +PostRule_MB 0 +PostRule_SG 0 +PostRule_BC 0 +PostRule_ZG 0 +PostRule_PL 0 +PostRule_DF 0 +PostRule_PS 0 +PostRule_ZM 0 +PostRule_ZS 0 +PostRule_DL 0 +PostRule_DR 0 +PostRule_DC 0 + + +# CPUE change multiplier. set to 0.5 for rule 1 and 1.0 for rule 2 +CPUEmult_FPL 0 +CPUEmult_FPO 0 +CPUEmult_FPS 0 +CPUEmult_FVD 0 +CPUEmult_FVV 0 +CPUEmult_FVS 0 +CPUEmult_FVB 0 +CPUEmult_FVT 0 +CPUEmult_FVO 0 +CPUEmult_FMM 0 +CPUEmult_FMN 0 +CPUEmult_FBP 1 +CPUEmult_FDD 0 +CPUEmult_FDE 0 +CPUEmult_FDS 0 +CPUEmult_FDM 0 +CPUEmult_FDP 0 +CPUEmult_FDB 0 +CPUEmult_FDC 1 +CPUEmult_FDO 0 +CPUEmult_FDF 1 +CPUEmult_SHB 0 +CPUEmult_SHD 0 +CPUEmult_SHC 0 +CPUEmult_SHP 0 +CPUEmult_SHR 0 +CPUEmult_SSK 0 +CPUEmult_SB 1 +CPUEmult_SP 0 +CPUEmult_PIN 1 +CPUEmult_REP 0 +CPUEmult_WHB 1 +CPUEmult_WHS 0 +CPUEmult_WHT 1 +CPUEmult_WDG 0 +CPUEmult_CEP 1 +CPUEmult_BFS 0 +CPUEmult_BFF 1 +CPUEmult_BFD 0 +CPUEmult_BG 1 +CPUEmult_BMD 0 +CPUEmult_BML 1 +CPUEmult_BMS 0 +CPUEmult_PWN 1 +CPUEmult_ZL 1 +CPUEmult_BD 1 +CPUEmult_MA 1 +CPUEmult_MB 1 +CPUEmult_SG 1 +CPUEmult_BC 1 +CPUEmult_ZG 1 +CPUEmult_PL 0 +CPUEmult_DF 0 +CPUEmult_PS 0 +CPUEmult_ZM 1 +CPUEmult_ZS 1 +CPUEmult_DL 0 +CPUEmult_DR 0 +CPUEmult_DC 0 + +# Max TAC change, maximum proportional change to TAC from the Tier 5 rule +MaxChange_FPL 0 +MaxChange_FPO 0 +MaxChange_FPS 0 +MaxChange_FVD 0 +MaxChange_FVV 0 +MaxChange_FVS 0 +MaxChange_FVB 0 +MaxChange_FVT 0 +MaxChange_FVO 0 +MaxChange_FMM 0 +MaxChange_FMN 0 +MaxChange_FBP 0.25 +MaxChange_FDD 0 +MaxChange_FDE 0 +MaxChange_FDS 0 +MaxChange_FDM 0 +MaxChange_FDP 0 +MaxChange_FDB 0 +MaxChange_FDC 0.25 +MaxChange_FDO 0 +MaxChange_FDF 0.25 +MaxChange_SHB 0 +MaxChange_SHD 0 +MaxChange_SHC 0 +MaxChange_SHP 0 +MaxChange_SHR 0 +MaxChange_SSK 0 +MaxChange_SB 0.25 +MaxChange_SP 0 +MaxChange_PIN 0.25 +MaxChange_REP 0 +MaxChange_WHB 0.25 +MaxChange_WHS 0 +MaxChange_WHT 0.25 +MaxChange_WDG 0 +MaxChange_CEP 0.25 +MaxChange_BFS 0 +MaxChange_BFF 0.25 +MaxChange_BFD 0 +MaxChange_BG 0.25 +MaxChange_BMD 0 +MaxChange_BML 0.25 +MaxChange_BMS 0 +MaxChange_PWN 0.25 +MaxChange_ZL 0.25 +MaxChange_BD 0.25 +MaxChange_MA 0.25 +MaxChange_MB 0.25 +MaxChange_SG 0.25 +MaxChange_BC 0.25 +MaxChange_ZG 0.25 +MaxChange_PL 0 +MaxChange_DF 0 +MaxChange_PS 0 +MaxChange_ZM 0.25 +MaxChange_ZS 0.25 +MaxChange_DL 0 +MaxChange_DR 0 +MaxChange_DC 0 + + +## Other paremeters - starting values for parameters in SS control file +# Mortality-growth offset option, 1=direct, 3=like SS2 +MG_offset_FPL 0 +MG_offset_FPO 0 +MG_offset_FPS 0 +MG_offset_FVD 0 +MG_offset_FVV 0 +MG_offset_FVS 0 +MG_offset_FVB 0 +MG_offset_FVT 0 +MG_offset_FVO 0 +MG_offset_FMM 0 +MG_offset_FMN 0 +MG_offset_FBP 3 +MG_offset_FDD 0 +MG_offset_FDE 0 +MG_offset_FDS 0 +MG_offset_FDM 0 +MG_offset_FDP 0 +MG_offset_FDB 0 +MG_offset_FDC 3 +MG_offset_FDO 0 +MG_offset_FDF 3 +MG_offset_SHB 0 +MG_offset_SHD 0 +MG_offset_SHC 0 +MG_offset_SHP 0 +MG_offset_SHR 0 +MG_offset_SSK 0 +MG_offset_SB 3 +MG_offset_SP 0 +MG_offset_PIN 3 +MG_offset_REP 0 +MG_offset_WHB 3 +MG_offset_WHS 0 +MG_offset_WHT 3 +MG_offset_WDG 0 +MG_offset_CEP 3 +MG_offset_BFS 0 +MG_offset_BFF 3 +MG_offset_BFD 0 +MG_offset_BG 3 +MG_offset_BMD 0 +MG_offset_BML 3 +MG_offset_BMS 0 +MG_offset_PWN 3 +MG_offset_ZL 3 +MG_offset_BD 3 +MG_offset_MA 3 +MG_offset_MB 3 +MG_offset_SG 3 +MG_offset_BC 3 +MG_offset_ZG 3 +MG_offset_PL 0 +MG_offset_DF 0 +MG_offset_PS 0 +MG_offset_ZM 3 +MG_offset_ZS 3 +MG_offset_DL 0 +MG_offset_DR 0 +MG_offset_DC 0 + + +# Regime shift: 1 = on, 0 = off +Regime_shift_assess_FPL 0 +Regime_shift_assess_FPO 0 +Regime_shift_assess_FPS 0 +Regime_shift_assess_FVD 0 +Regime_shift_assess_FVV 0 +Regime_shift_assess_FVS 0 +Regime_shift_assess_FVB 0 +Regime_shift_assess_FVT 0 +Regime_shift_assess_FVO 0 +Regime_shift_assess_FMM 0 +Regime_shift_assess_FMN 0 +Regime_shift_assess_FBP 0 +Regime_shift_assess_FDD 0 +Regime_shift_assess_FDE 0 +Regime_shift_assess_FDS 0 +Regime_shift_assess_FDM 0 +Regime_shift_assess_FDP 0 +Regime_shift_assess_FDB 0 +Regime_shift_assess_FDC 0 +Regime_shift_assess_FDO 0 +Regime_shift_assess_FDF 0 +Regime_shift_assess_SHB 0 +Regime_shift_assess_SHD 0 +Regime_shift_assess_SHC 0 +Regime_shift_assess_SHP 0 +Regime_shift_assess_SHR 0 +Regime_shift_assess_SSK 0 +Regime_shift_assess_SB 0 +Regime_shift_assess_SP 0 +Regime_shift_assess_PIN 0 +Regime_shift_assess_REP 0 +Regime_shift_assess_WHB 0 +Regime_shift_assess_WHS 0 +Regime_shift_assess_WHT 0 +Regime_shift_assess_WDG 0 +Regime_shift_assess_CEP 0 +Regime_shift_assess_BFS 0 +Regime_shift_assess_BFF 0 +Regime_shift_assess_BFD 0 +Regime_shift_assess_BG 0 +Regime_shift_assess_BMD 0 +Regime_shift_assess_BML 0 +Regime_shift_assess_BMS 0 +Regime_shift_assess_PWN 0 +Regime_shift_assess_ZL 0 +Regime_shift_assess_BD 0 +Regime_shift_assess_MA 0 +Regime_shift_assess_MB 0 +Regime_shift_assess_SG 0 +Regime_shift_assess_BC 0 +Regime_shift_assess_ZG 0 +Regime_shift_assess_PL 0 +Regime_shift_assess_DF 0 +Regime_shift_assess_PS 0 +Regime_shift_assess_ZM 0 +Regime_shift_assess_ZS 0 +Regime_shift_assess_DL 0 +Regime_shift_assess_DR 0 +Regime_shift_assess_DC 0 + +# Steepness - for recruitment assumptions +Hsteep_FPL 0 +Hsteep_FPO 0 +Hsteep_FPS 0 +Hsteep_FVD 0 +Hsteep_FVV 0 +Hsteep_FVS 0 +Hsteep_FVB 0 +Hsteep_FVT 0 +Hsteep_FVO 0 +Hsteep_FMM 0 +Hsteep_FMN 0 +Hsteep_FBP 1 +Hsteep_FDD 0 +Hsteep_FDE 0 +Hsteep_FDS 0 +Hsteep_FDM 0 +Hsteep_FDP 0 +Hsteep_FDB 0 +Hsteep_FDC 1 +Hsteep_FDO 0 +Hsteep_FDF 1 +Hsteep_SHB 0 +Hsteep_SHD 0 +Hsteep_SHC 0 +Hsteep_SHP 0 +Hsteep_SHR 0 +Hsteep_SSK 0 +Hsteep_SB 1 +Hsteep_SP 0 +Hsteep_PIN 1 +Hsteep_REP 0 +Hsteep_WHB 1 +Hsteep_WHS 0 +Hsteep_WHT 1 +Hsteep_WDG 0 +Hsteep_CEP 1 +Hsteep_BFS 0 +Hsteep_BFF 1 +Hsteep_BFD 0 +Hsteep_BG 1 +Hsteep_BMD 0 +Hsteep_BML 1 +Hsteep_BMS 0 +Hsteep_PWN 1 +Hsteep_ZL 1 +Hsteep_BD 1 +Hsteep_MA 1 +Hsteep_MB 1 +Hsteep_SG 1 +Hsteep_BC 1 +Hsteep_ZG 1 +Hsteep_PL 0 +Hsteep_DF 0 +Hsteep_PS 0 +Hsteep_ZM 1 +Hsteep_ZS 1 +Hsteep_DL 0 +Hsteep_DR 0 +Hsteep_DC 0 + +## Future assessment specifications +# Frequency of assessment",&AssessFreq); +AssessFreq_FPL 0 +AssessFreq_FPO 0 +AssessFreq_FPS 0 +AssessFreq_FVD 0 +AssessFreq_FVV 0 +AssessFreq_FVS 0 +AssessFreq_FVB 0 +AssessFreq_FVT 0 +AssessFreq_FVO 0 +AssessFreq_FMM 0 +AssessFreq_FMN 0 +AssessFreq_FBP 1 +AssessFreq_FDD 0 +AssessFreq_FDE 0 +AssessFreq_FDS 0 +AssessFreq_FDM 0 +AssessFreq_FDP 0 +AssessFreq_FDB 0 +AssessFreq_FDC 1 +AssessFreq_FDO 0 +AssessFreq_FDF 1 +AssessFreq_SHB 0 +AssessFreq_SHD 0 +AssessFreq_SHC 0 +AssessFreq_SHP 0 +AssessFreq_SHR 0 +AssessFreq_SSK 0 +AssessFreq_SB 1 +AssessFreq_SP 0 +AssessFreq_PIN 1 +AssessFreq_REP 0 +AssessFreq_WHB 1 +AssessFreq_WHS 0 +AssessFreq_WHT 1 +AssessFreq_WDG 0 +AssessFreq_CEP 1 +AssessFreq_BFS 0 +AssessFreq_BFF 1 +AssessFreq_BFD 0 +AssessFreq_BG 1 +AssessFreq_BMD 0 +AssessFreq_BML 1 +AssessFreq_BMS 0 +AssessFreq_PWN 1 +AssessFreq_ZL 1 +AssessFreq_BD 1 +AssessFreq_MA 1 +AssessFreq_MB 1 +AssessFreq_SG 1 +AssessFreq_BC 1 +AssessFreq_ZG 1 +AssessFreq_PL 0 +AssessFreq_DF 0 +AssessFreq_PS 0 +AssessFreq_ZM 1 +AssessFreq_ZS 1 +AssessFreq_DL 0 +AssessFreq_DR 0 +AssessFreq_DC 0 + + +# Number of years back from current to estimate rec devs to +RecDevBack_FPL 0 +RecDevBack_FPO 0 +RecDevBack_FPS 0 +RecDevBack_FVD 0 +RecDevBack_FVV 0 +RecDevBack_FVS 0 +RecDevBack_FVB 0 +RecDevBack_FVT 0 +RecDevBack_FVO 0 +RecDevBack_FMM 0 +RecDevBack_FMN 0 +RecDevBack_FBP 3 +RecDevBack_FDD 0 +RecDevBack_FDE 0 +RecDevBack_FDS 0 +RecDevBack_FDM 0 +RecDevBack_FDP 0 +RecDevBack_FDB 0 +RecDevBack_FDC 3 +RecDevBack_FDO 0 +RecDevBack_FDF 3 +RecDevBack_SHB 0 +RecDevBack_SHD 0 +RecDevBack_SHC 0 +RecDevBack_SHP 0 +RecDevBack_SHR 0 +RecDevBack_SSK 0 +RecDevBack_SB 3 +RecDevBack_SP 0 +RecDevBack_PIN 3 +RecDevBack_REP 0 +RecDevBack_WHB 3 +RecDevBack_WHS 0 +RecDevBack_WHT 3 +RecDevBack_WDG 0 +RecDevBack_CEP 3 +RecDevBack_BFS 0 +RecDevBack_BFF 3 +RecDevBack_BFD 0 +RecDevBack_BG 3 +RecDevBack_BMD 0 +RecDevBack_BML 3 +RecDevBack_BMS 0 +RecDevBack_PWN 3 +RecDevBack_ZL 3 +RecDevBack_BD 3 +RecDevBack_MA 3 +RecDevBack_MB 3 +RecDevBack_SG 3 +RecDevBack_BC 3 +RecDevBack_ZG 3 +RecDevBack_PL 0 +RecDevBack_DF 0 +RecDevBack_PS 0 +RecDevBack_ZM 3 +RecDevBack_ZS 3 +RecDevBack_DL 0 +RecDevBack_DR 0 +RecDevBack_DC 0 + +# F ballpark for tuning early phases +BallParkF_FPL 0 +BallParkF_FPO 0 +BallParkF_FPS 0 +BallParkF_FVD 0 +BallParkF_FVV 0 +BallParkF_FVS 0 +BallParkF_FVB 0 +BallParkF_FVT 0 +BallParkF_FVO 0 +BallParkF_FMM 0 +BallParkF_FMN 0 +BallParkF_FBP 0.2 +BallParkF_FDD 0 +BallParkF_FDE 0 +BallParkF_FDS 0 +BallParkF_FDM 0 +BallParkF_FDP 0 +BallParkF_FDB 0 +BallParkF_FDC 0.2 +BallParkF_FDO 0 +BallParkF_FDF 0.2 +BallParkF_SHB 0 +BallParkF_SHD 0 +BallParkF_SHC 0 +BallParkF_SHP 0 +BallParkF_SHR 0 +BallParkF_SSK 0 +BallParkF_SB 0.2 +BallParkF_SP 0 +BallParkF_PIN 0.2 +BallParkF_REP 0 +BallParkF_WHB 0.2 +BallParkF_WHS 0 +BallParkF_WHT 0.2 +BallParkF_WDG 0 +BallParkF_CEP 0.2 +BallParkF_BFS 0 +BallParkF_BFF 0.2 +BallParkF_BFD 0 +BallParkF_BG 0.2 +BallParkF_BMD 0 +BallParkF_BML 0.2 +BallParkF_BMS 0 +BallParkF_PWN 0.2 +BallParkF_ZL 0.2 +BallParkF_BD 0.2 +BallParkF_MA 0.2 +BallParkF_MB 0.2 +BallParkF_SG 0.2 +BallParkF_BC 0.2 +BallParkF_ZG 0.2 +BallParkF_PL 0 +BallParkF_DF 0 +BallParkF_PS 0 +BallParkF_ZM 0.2 +BallParkF_ZS 0.2 +BallParkF_DL 0 +BallParkF_DR 0 +BallParkF_DC 0 + +# F ballpark year (neg value to disable) - relative to run start +BallParkYr_FPL 0 +BallParkYr_FPO 0 +BallParkYr_FPS 0 +BallParkYr_FVD 0 +BallParkYr_FVV 0 +BallParkYr_FVS 0 +BallParkYr_FVB 0 +BallParkYr_FVT 0 +BallParkYr_FVO 0 +BallParkYr_FMM 0 +BallParkYr_FMN 0 +BallParkYr_FBP -1 +BallParkYr_FDD 0 +BallParkYr_FDE 0 +BallParkYr_FDS 0 +BallParkYr_FDM 0 +BallParkYr_FDP 0 +BallParkYr_FDB 0 +BallParkYr_FDC -1 +BallParkYr_FDO 0 +BallParkYr_FDF -1 +BallParkYr_SHB 0 +BallParkYr_SHD 0 +BallParkYr_SHC 0 +BallParkYr_SHP 0 +BallParkYr_SHR 0 +BallParkYr_SSK 0 +BallParkYr_SB -1 +BallParkYr_SP 0 +BallParkYr_PIN -1 +BallParkYr_REP 0 +BallParkYr_WHB -1 +BallParkYr_WHS 0 +BallParkYr_WHT -1 +BallParkYr_WDG 0 +BallParkYr_CEP -1 +BallParkYr_BFS 0 +BallParkYr_BFF -1 +BallParkYr_BFD 0 +BallParkYr_BG -1 +BallParkYr_BMD 0 +BallParkYr_BML -1 +BallParkYr_BMS 0 +BallParkYr_PWN -1 +BallParkYr_ZL -1 +BallParkYr_BD -1 +BallParkYr_MA -1 +BallParkYr_MB -1 +BallParkYr_SG -1 +BallParkYr_BC -1 +BallParkYr_ZG -1 +BallParkYr_PL 0 +BallParkYr_DF 0 +BallParkYr_PS 0 +BallParkYr_ZM -1 +BallParkYr_ZS -1 +BallParkYr_DL 0 +BallParkYr_DR 0 +BallParkYr_DC 0 + +# Number of changes to make to default lambdas +NumChangeLambda_FPL 0 +NumChangeLambda_FPO 0 +NumChangeLambda_FPS 0 +NumChangeLambda_FVD 0 +NumChangeLambda_FVV 0 +NumChangeLambda_FVS 0 +NumChangeLambda_FVB 0 +NumChangeLambda_FVT 0 +NumChangeLambda_FVO 0 +NumChangeLambda_FMM 0 +NumChangeLambda_FMN 0 +NumChangeLambda_FBP 0 +NumChangeLambda_FDD 0 +NumChangeLambda_FDE 0 +NumChangeLambda_FDS 0 +NumChangeLambda_FDM 0 +NumChangeLambda_FDP 0 +NumChangeLambda_FDB 0 +NumChangeLambda_FDC 0 +NumChangeLambda_FDO 0 +NumChangeLambda_FDF 0 +NumChangeLambda_SHB 0 +NumChangeLambda_SHD 0 +NumChangeLambda_SHC 0 +NumChangeLambda_SHP 0 +NumChangeLambda_SHR 0 +NumChangeLambda_SSK 0 +NumChangeLambda_SB 0 +NumChangeLambda_SP 0 +NumChangeLambda_PIN 0 +NumChangeLambda_REP 0 +NumChangeLambda_WHB 0 +NumChangeLambda_WHS 0 +NumChangeLambda_WHT 0 +NumChangeLambda_WDG 0 +NumChangeLambda_CEP 0 +NumChangeLambda_BFS 0 +NumChangeLambda_BFF 0 +NumChangeLambda_BFD 0 +NumChangeLambda_BG 0 +NumChangeLambda_BMD 0 +NumChangeLambda_BML 0 +NumChangeLambda_BMS 0 +NumChangeLambda_PWN 0 +NumChangeLambda_ZL 0 +NumChangeLambda_BD 0 +NumChangeLambda_MA 0 +NumChangeLambda_MB 0 +NumChangeLambda_SG 0 +NumChangeLambda_BC 0 +NumChangeLambda_ZG 0 +NumChangeLambda_PL 0 +NumChangeLambda_DF 0 +NumChangeLambda_PS 0 +NumChangeLambda_ZM 0 +NumChangeLambda_ZS 0 +NumChangeLambda_DL 0 +NumChangeLambda_DR 0 +NumChangeLambda_DC 0 + + +# Number of environmental observations +num_enviro_obs_FPL 0 +num_enviro_obs_FPO 0 +num_enviro_obs_FPS 0 +num_enviro_obs_FVD 0 +num_enviro_obs_FVV 0 +num_enviro_obs_FVS 0 +num_enviro_obs_FVB 0 +num_enviro_obs_FVT 0 +num_enviro_obs_FVO 0 +num_enviro_obs_FMM 0 +num_enviro_obs_FMN 0 +num_enviro_obs_FBP 0 +num_enviro_obs_FDD 0 +num_enviro_obs_FDE 0 +num_enviro_obs_FDS 0 +num_enviro_obs_FDM 0 +num_enviro_obs_FDP 0 +num_enviro_obs_FDB 0 +num_enviro_obs_FDC 0 +num_enviro_obs_FDO 0 +num_enviro_obs_FDF 0 +num_enviro_obs_SHB 0 +num_enviro_obs_SHD 0 +num_enviro_obs_SHC 0 +num_enviro_obs_SHP 0 +num_enviro_obs_SHR 0 +num_enviro_obs_SSK 0 +num_enviro_obs_SB 0 +num_enviro_obs_SP 0 +num_enviro_obs_PIN 0 +num_enviro_obs_REP 0 +num_enviro_obs_WHB 0 +num_enviro_obs_WHS 0 +num_enviro_obs_WHT 0 +num_enviro_obs_WDG 0 +num_enviro_obs_CEP 0 +num_enviro_obs_BFS 0 +num_enviro_obs_BFF 0 +num_enviro_obs_BFD 0 +num_enviro_obs_BG 0 +num_enviro_obs_BMD 0 +num_enviro_obs_BML 0 +num_enviro_obs_BMS 0 +num_enviro_obs_PWN 0 +num_enviro_obs_ZL 0 +num_enviro_obs_BD 0 +num_enviro_obs_MA 0 +num_enviro_obs_MB 0 +num_enviro_obs_SG 0 +num_enviro_obs_BC 0 +num_enviro_obs_ZG 0 +num_enviro_obs_PL 0 +num_enviro_obs_DF 0 +num_enviro_obs_PS 0 +num_enviro_obs_ZM 0 +num_enviro_obs_ZS 0 +num_enviro_obs_DL 0 +num_enviro_obs_DR 0 +num_enviro_obs_DC 0 + + +# Number of growth morphs - has to have a minimum of 1 +num_growth_morphs_FPL 0 +num_growth_morphs_FPO 0 +num_growth_morphs_FPS 0 +num_growth_morphs_FVD 0 +num_growth_morphs_FVV 0 +num_growth_morphs_FVS 0 +num_growth_morphs_FVB 0 +num_growth_morphs_FVT 0 +num_growth_morphs_FVO 0 +num_growth_morphs_FMM 0 +num_growth_morphs_FMN 0 +num_growth_morphs_FBP 1 +num_growth_morphs_FDD 0 +num_growth_morphs_FDE 0 +num_growth_morphs_FDS 0 +num_growth_morphs_FDM 0 +num_growth_morphs_FDP 0 +num_growth_morphs_FDB 0 +num_growth_morphs_FDC 1 +num_growth_morphs_FDO 0 +num_growth_morphs_FDF 1 +num_growth_morphs_SHB 0 +num_growth_morphs_SHD 0 +num_growth_morphs_SHC 0 +num_growth_morphs_SHP 0 +num_growth_morphs_SHR 0 +num_growth_morphs_SSK 0 +num_growth_morphs_SB 1 +num_growth_morphs_SP 0 +num_growth_morphs_PIN 1 +num_growth_morphs_REP 0 +num_growth_morphs_WHB 1 +num_growth_morphs_WHS 0 +num_growth_morphs_WHT 1 +num_growth_morphs_WDG 0 +num_growth_morphs_CEP 1 +num_growth_morphs_BFS 0 +num_growth_morphs_BFF 1 +num_growth_morphs_BFD 0 +num_growth_morphs_BG 1 +num_growth_morphs_BMD 0 +num_growth_morphs_BML 1 +num_growth_morphs_BMS 0 +num_growth_morphs_PWN 1 +num_growth_morphs_ZL 1 +num_growth_morphs_BD 1 +num_growth_morphs_MA 1 +num_growth_morphs_MB 1 +num_growth_morphs_SG 1 +num_growth_morphs_BC 1 +num_growth_morphs_ZG 1 +num_growth_morphs_PL 0 +num_growth_morphs_DF 0 +num_growth_morphs_PS 0 +num_growth_morphs_ZM 1 +num_growth_morphs_ZS 1 +num_growth_morphs_DL 0 +num_growth_morphs_DR 0 +num_growth_morphs_DC 0 + +## Size parameters +# Number of sexes in sample +Nsex_samp_FPL 0 +Nsex_samp_FPO 0 +Nsex_samp_FPS 0 +Nsex_samp_FVD 0 +Nsex_samp_FVV 0 +Nsex_samp_FVS 0 +Nsex_samp_FVB 0 +Nsex_samp_FVT 0 +Nsex_samp_FVO 0 +Nsex_samp_FMM 0 +Nsex_samp_FMN 0 +Nsex_samp_FBP 1 +Nsex_samp_FDD 0 +Nsex_samp_FDE 0 +Nsex_samp_FDS 0 +Nsex_samp_FDM 0 +Nsex_samp_FDP 0 +Nsex_samp_FDB 0 +Nsex_samp_FDC 1 +Nsex_samp_FDO 0 +Nsex_samp_FDF 1 +Nsex_samp_SHB 0 +Nsex_samp_SHD 0 +Nsex_samp_SHC 0 +Nsex_samp_SHP 0 +Nsex_samp_SHR 0 +Nsex_samp_SSK 0 +Nsex_samp_SB 1 +Nsex_samp_SP 0 +Nsex_samp_PIN 1 +Nsex_samp_REP 0 +Nsex_samp_WHB 1 +Nsex_samp_WHS 0 +Nsex_samp_WHT 1 +Nsex_samp_WDG 0 +Nsex_samp_CEP 1 +Nsex_samp_BFS 0 +Nsex_samp_BFF 1 +Nsex_samp_BFD 0 +Nsex_samp_BG 1 +Nsex_samp_BMD 0 +Nsex_samp_BML 1 +Nsex_samp_BMS 0 +Nsex_samp_PWN 1 +Nsex_samp_ZL 1 +Nsex_samp_BD 1 +Nsex_samp_MA 1 +Nsex_samp_MB 1 +Nsex_samp_SG 1 +Nsex_samp_BC 1 +Nsex_samp_ZG 1 +Nsex_samp_PL 0 +Nsex_samp_DF 0 +Nsex_samp_PS 0 +Nsex_samp_ZM 1 +Nsex_samp_ZS 1 +Nsex_samp_DL 0 +Nsex_samp_DR 0 +Nsex_samp_DC 0 + +# Maximum age +MaxAge_FPL 0 +MaxAge_FPO 0 +MaxAge_FPS 0 +MaxAge_FVD 0 +MaxAge_FVV 0 +MaxAge_FVS 0 +MaxAge_FVB 0 +MaxAge_FVT 0 +MaxAge_FVO 0 +MaxAge_FMM 0 +MaxAge_FMN 0 +MaxAge_FBP 20 +MaxAge_FDD 0 +MaxAge_FDE 0 +MaxAge_FDS 0 +MaxAge_FDM 0 +MaxAge_FDP 0 +MaxAge_FDB 0 +MaxAge_FDC 20 +MaxAge_FDO 0 +MaxAge_FDF 20 +MaxAge_SHB 0 +MaxAge_SHD 0 +MaxAge_SHC 0 +MaxAge_SHP 0 +MaxAge_SHR 0 +MaxAge_SSK 0 +MaxAge_SB 20 +MaxAge_SP 0 +MaxAge_PIN 20 +MaxAge_REP 0 +MaxAge_WHB 20 +MaxAge_WHS 0 +MaxAge_WHT 20 +MaxAge_WDG 0 +MaxAge_CEP 20 +MaxAge_BFS 0 +MaxAge_BFF 20 +MaxAge_BFD 0 +MaxAge_BG 20 +MaxAge_BMD 0 +MaxAge_BML 20 +MaxAge_BMS 0 +MaxAge_PWN 20 +MaxAge_ZL 20 +MaxAge_BD 20 +MaxAge_MA 20 +MaxAge_MB 20 +MaxAge_SG 20 +MaxAge_BC 20 +MaxAge_ZG 20 +MaxAge_PL 0 +MaxAge_DF 0 +MaxAge_PS 0 +MaxAge_ZM 20 +MaxAge_ZS 20 +MaxAge_DL 0 +MaxAge_DR 0 +MaxAge_DC 0 + +# Number of future years +Nyfuture_FPL 0 +Nyfuture_FPO 0 +Nyfuture_FPS 0 +Nyfuture_FVD 0 +Nyfuture_FVV 0 +Nyfuture_FVS 0 +Nyfuture_FVB 0 +Nyfuture_FVT 0 +Nyfuture_FVO 0 +Nyfuture_FMM 0 +Nyfuture_FMN 0 +Nyfuture_FBP 30 +Nyfuture_FDD 0 +Nyfuture_FDE 0 +Nyfuture_FDS 0 +Nyfuture_FDM 0 +Nyfuture_FDP 0 +Nyfuture_FDB 0 +Nyfuture_FDC 30 +Nyfuture_FDO 0 +Nyfuture_FDF 30 +Nyfuture_SHB 0 +Nyfuture_SHD 0 +Nyfuture_SHC 0 +Nyfuture_SHP 0 +Nyfuture_SHR 0 +Nyfuture_SSK 0 +Nyfuture_SB 30 +Nyfuture_SP 0 +Nyfuture_PIN 30 +Nyfuture_REP 0 +Nyfuture_WHB 30 +Nyfuture_WHS 0 +Nyfuture_WHT 30 +Nyfuture_WDG 0 +Nyfuture_CEP 30 +Nyfuture_BFS 0 +Nyfuture_BFF 30 +Nyfuture_BFD 0 +Nyfuture_BG 30 +Nyfuture_BMD 0 +Nyfuture_BML 30 +Nyfuture_BMS 0 +Nyfuture_PWN 30 +Nyfuture_ZL 30 +Nyfuture_BD 30 +Nyfuture_MA 30 +Nyfuture_MB 30 +Nyfuture_SG 30 +Nyfuture_BC 30 +Nyfuture_ZG 30 +Nyfuture_PL 0 +Nyfuture_DF 0 +Nyfuture_PS 0 +Nyfuture_ZM 30 +Nyfuture_ZS 30 +Nyfuture_DL 0 +Nyfuture_DR 0 +Nyfuture_DC 0 + + +# Number of length bins +Nlen_FPL 0 +Nlen_FPO 0 +Nlen_FPS 0 +Nlen_FVD 0 +Nlen_FVV 0 +Nlen_FVS 0 +Nlen_FVB 0 +Nlen_FVT 0 +Nlen_FVO 0 +Nlen_FMM 0 +Nlen_FMN 0 +Nlen_FBP 10 +Nlen_FDD 0 +Nlen_FDE 0 +Nlen_FDS 0 +Nlen_FDM 0 +Nlen_FDP 0 +Nlen_FDB 0 +Nlen_FDC 10 +Nlen_FDO 0 +Nlen_FDF 10 +Nlen_SHB 0 +Nlen_SHD 0 +Nlen_SHC 0 +Nlen_SHP 0 +Nlen_SHR 0 +Nlen_SSK 0 +Nlen_SB 10 +Nlen_SP 0 +Nlen_PIN 10 +Nlen_REP 0 +Nlen_WHB 10 +Nlen_WHS 0 +Nlen_WHT 10 +Nlen_WDG 0 +Nlen_CEP 10 +Nlen_BFS 0 +Nlen_BFF 10 +Nlen_BFD 0 +Nlen_BG 10 +Nlen_BMD 0 +Nlen_BML 10 +Nlen_BMS 0 +Nlen_PWN 10 +Nlen_ZL 10 +Nlen_BD 10 +Nlen_MA 10 +Nlen_MB 10 +Nlen_SG 10 +Nlen_BC 10 +Nlen_ZG 10 +Nlen_PL 0 +Nlen_DF 0 +Nlen_PS 0 +Nlen_ZM 10 +Nlen_ZS 10 +Nlen_DL 0 +Nlen_DR 0 +Nlen_DC 0 + +# Size of length bins +Lbin_FPL 0 +Lbin_FPO 0 +Lbin_FPS 0 +Lbin_FVD 0 +Lbin_FVV 0 +Lbin_FVS 0 +Lbin_FVB 0 +Lbin_FVT 0 +Lbin_FVO 0 +Lbin_FMM 0 +Lbin_FMN 0 +Lbin_FBP 1 +Lbin_FDD 0 +Lbin_FDE 0 +Lbin_FDS 0 +Lbin_FDM 0 +Lbin_FDP 0 +Lbin_FDB 0 +Lbin_FDC 1 +Lbin_FDO 0 +Lbin_FDF 1 +Lbin_SHB 0 +Lbin_SHD 0 +Lbin_SHC 0 +Lbin_SHP 0 +Lbin_SHR 0 +Lbin_SSK 0 +Lbin_SB 1 +Lbin_SP 0 +Lbin_PIN 1 +Lbin_REP 0 +Lbin_WHB 1 +Lbin_WHS 0 +Lbin_WHT 1 +Lbin_WDG 0 +Lbin_CEP 1 +Lbin_BFS 0 +Lbin_BFF 1 +Lbin_BFD 0 +Lbin_BG 1 +Lbin_BMD 0 +Lbin_BML 1 +Lbin_BMS 0 +Lbin_PWN 1 +Lbin_ZL 1 +Lbin_BD 1 +Lbin_MA 1 +Lbin_MB 1 +Lbin_SG 1 +Lbin_BC 1 +Lbin_ZG 1 +Lbin_PL 0 +Lbin_DF 0 +Lbin_PS 0 +Lbin_ZM 1 +Lbin_ZS 1 +Lbin_DL 0 +Lbin_DR 0 +Lbin_DC 0 + + +## SS3 Biological parameters +# Flag indicating whether input length at age directly, 1 = input length at age directly, 0 = use growth parameters +flagLAdirect_FPL 0 +flagLAdirect_FPO 0 +flagLAdirect_FPS 0 +flagLAdirect_FVD 0 +flagLAdirect_FVV 0 +flagLAdirect_FVS 0 +flagLAdirect_FVB 0 +flagLAdirect_FVT 0 +flagLAdirect_FVO 0 +flagLAdirect_FMM 0 +flagLAdirect_FMN 0 +flagLAdirect_FBP 1 +flagLAdirect_FDD 0 +flagLAdirect_FDE 0 +flagLAdirect_FDS 0 +flagLAdirect_FDM 0 +flagLAdirect_FDP 0 +flagLAdirect_FDB 0 +flagLAdirect_FDC 1 +flagLAdirect_FDO 0 +flagLAdirect_FDF 1 +flagLAdirect_SHB 0 +flagLAdirect_SHD 0 +flagLAdirect_SHC 0 +flagLAdirect_SHP 0 +flagLAdirect_SHR 0 +flagLAdirect_SSK 0 +flagLAdirect_SB 1 +flagLAdirect_SP 0 +flagLAdirect_PIN 1 +flagLAdirect_REP 0 +flagLAdirect_WHB 1 +flagLAdirect_WHS 0 +flagLAdirect_WHT 1 +flagLAdirect_WDG 0 +flagLAdirect_CEP 1 +flagLAdirect_BFS 0 +flagLAdirect_BFF 1 +flagLAdirect_BFD 0 +flagLAdirect_BG 1 +flagLAdirect_BMD 0 +flagLAdirect_BML 1 +flagLAdirect_BMS 0 +flagLAdirect_PWN 1 +flagLAdirect_ZL 1 +flagLAdirect_BD 1 +flagLAdirect_MA 1 +flagLAdirect_MB 1 +flagLAdirect_SG 1 +flagLAdirect_BC 1 +flagLAdirect_ZG 1 +flagLAdirect_PL 0 +flagLAdirect_DF 0 +flagLAdirect_PS 0 +flagLAdirect_ZM 1 +flagLAdirect_ZS 1 +flagLAdirect_DL 0 +flagLAdirect_DR 0 +flagLAdirect_DC 0 + +# Flag indicating whether input sd length at age directly, 1 = input sd length at age directly, 0 = use CV parameters +flagSLAdirect_FPL 0 +flagSLAdirect_FPO 0 +flagSLAdirect_FPS 0 +flagSLAdirect_FVD 0 +flagSLAdirect_FVV 0 +flagSLAdirect_FVS 0 +flagSLAdirect_FVB 0 +flagSLAdirect_FVT 0 +flagSLAdirect_FVO 0 +flagSLAdirect_FMM 0 +flagSLAdirect_FMN 0 +flagSLAdirect_FBP 1 +flagSLAdirect_FDD 0 +flagSLAdirect_FDE 0 +flagSLAdirect_FDS 0 +flagSLAdirect_FDM 0 +flagSLAdirect_FDP 0 +flagSLAdirect_FDB 0 +flagSLAdirect_FDC 1 +flagSLAdirect_FDO 0 +flagSLAdirect_FDF 1 +flagSLAdirect_SHB 0 +flagSLAdirect_SHD 0 +flagSLAdirect_SHC 0 +flagSLAdirect_SHP 0 +flagSLAdirect_SHR 0 +flagSLAdirect_SSK 0 +flagSLAdirect_SB 1 +flagSLAdirect_SP 0 +flagSLAdirect_PIN 1 +flagSLAdirect_REP 0 +flagSLAdirect_WHB 1 +flagSLAdirect_WHS 0 +flagSLAdirect_WHT 1 +flagSLAdirect_WDG 0 +flagSLAdirect_CEP 1 +flagSLAdirect_BFS 0 +flagSLAdirect_BFF 1 +flagSLAdirect_BFD 0 +flagSLAdirect_BG 1 +flagSLAdirect_BMD 0 +flagSLAdirect_BML 1 +flagSLAdirect_BMS 0 +flagSLAdirect_PWN 1 +flagSLAdirect_ZL 1 +flagSLAdirect_BD 1 +flagSLAdirect_MA 1 +flagSLAdirect_MB 1 +flagSLAdirect_SG 1 +flagSLAdirect_BC 1 +flagSLAdirect_ZG 1 +flagSLAdirect_PL 0 +flagSLAdirect_DF 0 +flagSLAdirect_PS 0 +flagSLAdirect_ZM 1 +flagSLAdirect_ZS 1 +flagSLAdirect_DL 0 +flagSLAdirect_DR 0 +flagSLAdirect_DC 0 + +# Flag indicating whether input weight at age directly +flagWAdirect_FPL 0 +flagWAdirect_FPO 0 +flagWAdirect_FPS 0 +flagWAdirect_FVD 0 +flagWAdirect_FVV 0 +flagWAdirect_FVS 0 +flagWAdirect_FVB 0 +flagWAdirect_FVT 0 +flagWAdirect_FVO 0 +flagWAdirect_FMM 0 +flagWAdirect_FMN 0 +flagWAdirect_FBP 1 +flagWAdirect_FDD 0 +flagWAdirect_FDE 0 +flagWAdirect_FDS 0 +flagWAdirect_FDM 0 +flagWAdirect_FDP 0 +flagWAdirect_FDB 0 +flagWAdirect_FDC 1 +flagWAdirect_FDO 0 +flagWAdirect_FDF 1 +flagWAdirect_SHB 0 +flagWAdirect_SHD 0 +flagWAdirect_SHC 0 +flagWAdirect_SHP 0 +flagWAdirect_SHR 0 +flagWAdirect_SSK 0 +flagWAdirect_SB 1 +flagWAdirect_SP 0 +flagWAdirect_PIN 1 +flagWAdirect_REP 0 +flagWAdirect_WHB 1 +flagWAdirect_WHS 0 +flagWAdirect_WHT 1 +flagWAdirect_WDG 0 +flagWAdirect_CEP 1 +flagWAdirect_BFS 0 +flagWAdirect_BFF 1 +flagWAdirect_BFD 0 +flagWAdirect_BG 1 +flagWAdirect_BMD 0 +flagWAdirect_BML 1 +flagWAdirect_BMS 0 +flagWAdirect_PWN 1 +flagWAdirect_ZL 1 +flagWAdirect_BD 1 +flagWAdirect_MA 1 +flagWAdirect_MB 1 +flagWAdirect_SG 1 +flagWAdirect_BC 1 +flagWAdirect_ZG 1 +flagWAdirect_PL 0 +flagWAdirect_DF 0 +flagWAdirect_PS 0 +flagWAdirect_ZM 1 +flagWAdirect_ZS 1 +flagWAdirect_DL 0 +flagWAdirect_DR 0 +flagWAdirect_DC 0 + +## Recruitment parameters +# stdev recruitment 1 +SigmaR1_FPL 0 +SigmaR1_FPO 0 +SigmaR1_FPS 0 +SigmaR1_FVD 0 +SigmaR1_FVV 0 +SigmaR1_FVS 0 +SigmaR1_FVB 0 +SigmaR1_FVT 0 +SigmaR1_FVO 0 +SigmaR1_FMM 0 +SigmaR1_FMN 0 +SigmaR1_FBP 0.35 +SigmaR1_FDD 0 +SigmaR1_FDE 0 +SigmaR1_FDS 0 +SigmaR1_FDM 0 +SigmaR1_FDP 0 +SigmaR1_FDB 0 +SigmaR1_FDC 0.35 +SigmaR1_FDO 0 +SigmaR1_FDF 0.35 +SigmaR1_SHB 0 +SigmaR1_SHD 0 +SigmaR1_SHC 0 +SigmaR1_SHP 0 +SigmaR1_SHR 0 +SigmaR1_SSK 0 +SigmaR1_SB 0.35 +SigmaR1_SP 0 +SigmaR1_PIN 0.35 +SigmaR1_REP 0 +SigmaR1_WHB 0.35 +SigmaR1_WHS 0 +SigmaR1_WHT 0.35 +SigmaR1_WDG 0 +SigmaR1_CEP 0.35 +SigmaR1_BFS 0 +SigmaR1_BFF 0.35 +SigmaR1_BFD 0 +SigmaR1_BG 0.35 +SigmaR1_BMD 0 +SigmaR1_BML 0.35 +SigmaR1_BMS 0 +SigmaR1_PWN 0.35 +SigmaR1_ZL 0.35 +SigmaR1_BD 0.35 +SigmaR1_MA 0.35 +SigmaR1_MB 0.35 +SigmaR1_SG 0.35 +SigmaR1_BC 0.35 +SigmaR1_ZG 0.35 +SigmaR1_PL 0 +SigmaR1_DF 0 +SigmaR1_PS 0 +SigmaR1_ZM 0.35 +SigmaR1_ZS 0.35 +SigmaR1_DL 0 +SigmaR1_DR 0 +SigmaR1_DC 0 + +# stdev recruitment 2 +SigmaR2_FPL 0 +SigmaR2_FPO 0 +SigmaR2_FPS 0 +SigmaR2_FVD 0 +SigmaR2_FVV 0 +SigmaR2_FVS 0 +SigmaR2_FVB 0 +SigmaR2_FVT 0 +SigmaR2_FVO 0 +SigmaR2_FMM 0 +SigmaR2_FMN 0 +SigmaR2_FBP 1.5 +SigmaR2_FDD 0 +SigmaR2_FDE 0 +SigmaR2_FDS 0 +SigmaR2_FDM 0 +SigmaR2_FDP 0 +SigmaR2_FDB 0 +SigmaR2_FDC 1.5 +SigmaR2_FDO 0 +SigmaR2_FDF 1.5 +SigmaR2_SHB 0 +SigmaR2_SHD 0 +SigmaR2_SHC 0 +SigmaR2_SHP 0 +SigmaR2_SHR 0 +SigmaR2_SSK 0 +SigmaR2_SB 1.5 +SigmaR2_SP 0 +SigmaR2_PIN 1.5 +SigmaR2_REP 0 +SigmaR2_WHB 1.5 +SigmaR2_WHS 0 +SigmaR2_WHT 1.5 +SigmaR2_WDG 0 +SigmaR2_CEP 1.5 +SigmaR2_BFS 0 +SigmaR2_BFF 1.5 +SigmaR2_BFD 0 +SigmaR2_BG 1.5 +SigmaR2_BMD 0 +SigmaR2_BML 1.5 +SigmaR2_BMS 0 +SigmaR2_PWN 1.5 +SigmaR2_ZL 1.5 +SigmaR2_BD 1.5 +SigmaR2_MA 1.5 +SigmaR2_MB 1.5 +SigmaR2_SG 1.5 +SigmaR2_BC 1.5 +SigmaR2_ZG 1.5 +SigmaR2_PL 0 +SigmaR2_DF 0 +SigmaR2_PS 0 +SigmaR2_ZM 1.5 +SigmaR2_ZS 1.5 +SigmaR2_DL 0 +SigmaR2_DR 0 +SigmaR2_DC 0 + + +# stdev recruitment future +SigmaR_future_FPL 0 +SigmaR_future_FPO 0 +SigmaR_future_FPS 0 +SigmaR_future_FVD 0 +SigmaR_future_FVV 0 +SigmaR_future_FVS 0 +SigmaR_future_FVB 0 +SigmaR_future_FVT 0 +SigmaR_future_FVO 0 +SigmaR_future_FMM 0 +SigmaR_future_FMN 0 +SigmaR_future_FBP 0.35 +SigmaR_future_FDD 0 +SigmaR_future_FDE 0 +SigmaR_future_FDS 0 +SigmaR_future_FDM 0 +SigmaR_future_FDP 0 +SigmaR_future_FDB 0 +SigmaR_future_FDC 0.35 +SigmaR_future_FDO 0 +SigmaR_future_FDF 0.35 +SigmaR_future_SHB 0 +SigmaR_future_SHD 0 +SigmaR_future_SHC 0 +SigmaR_future_SHP 0 +SigmaR_future_SHR 0 +SigmaR_future_SSK 0 +SigmaR_future_SB 0.35 +SigmaR_future_SP 0 +SigmaR_future_PIN 0.35 +SigmaR_future_REP 0 +SigmaR_future_WHB 0.35 +SigmaR_future_WHS 0 +SigmaR_future_WHT 0.35 +SigmaR_future_WDG 0 +SigmaR_future_CEP 0.35 +SigmaR_future_BFS 0 +SigmaR_future_BFF 0.35 +SigmaR_future_BFD 0 +SigmaR_future_BG 0.35 +SigmaR_future_BMD 0 +SigmaR_future_BML 0.35 +SigmaR_future_BMS 0 +SigmaR_future_PWN 0.35 +SigmaR_future_ZL 0.35 +SigmaR_future_BD 0.35 +SigmaR_future_MA 0.35 +SigmaR_future_MB 0.35 +SigmaR_future_SG 0.35 +SigmaR_future_BC 0.35 +SigmaR_future_ZG 0.35 +SigmaR_future_PL 0 +SigmaR_future_DF 0 +SigmaR_future_PS 0 +SigmaR_future_ZM 0.35 +SigmaR_future_ZS 0.35 +SigmaR_future_DL 0 +SigmaR_future_DR 0 +SigmaR_future_DC 0 + +# Probability of normal recruitment +PSigmaR1_FPL 0 +PSigmaR1_FPO 0 +PSigmaR1_FPS 0 +PSigmaR1_FVD 0 +PSigmaR1_FVV 0 +PSigmaR1_FVS 0 +PSigmaR1_FVB 0 +PSigmaR1_FVT 0 +PSigmaR1_FVO 0 +PSigmaR1_FMM 0 +PSigmaR1_FMN 0 +PSigmaR1_FBP 1 +PSigmaR1_FDD 0 +PSigmaR1_FDE 0 +PSigmaR1_FDS 0 +PSigmaR1_FDM 0 +PSigmaR1_FDP 0 +PSigmaR1_FDB 0 +PSigmaR1_FDC 1 +PSigmaR1_FDO 0 +PSigmaR1_FDF 1 +PSigmaR1_SHB 0 +PSigmaR1_SHD 0 +PSigmaR1_SHC 0 +PSigmaR1_SHP 0 +PSigmaR1_SHR 0 +PSigmaR1_SSK 0 +PSigmaR1_SB 1 +PSigmaR1_SP 0 +PSigmaR1_PIN 1 +PSigmaR1_REP 0 +PSigmaR1_WHB 1 +PSigmaR1_WHS 0 +PSigmaR1_WHT 1 +PSigmaR1_WDG 0 +PSigmaR1_CEP 1 +PSigmaR1_BFS 0 +PSigmaR1_BFF 1 +PSigmaR1_BFD 0 +PSigmaR1_BG 1 +PSigmaR1_BMD 0 +PSigmaR1_BML 1 +PSigmaR1_BMS 0 +PSigmaR1_PWN 1 +PSigmaR1_ZL 1 +PSigmaR1_BD 1 +PSigmaR1_MA 1 +PSigmaR1_MB 1 +PSigmaR1_SG 1 +PSigmaR1_BC 1 +PSigmaR1_ZG 1 +PSigmaR1_PL 0 +PSigmaR1_DF 0 +PSigmaR1_PS 0 +PSigmaR1_ZM 1 +PSigmaR1_ZS 1 +PSigmaR1_DL 0 +PSigmaR1_DR 0 +PSigmaR1_DC 0 + + +# Start year for regime shift - relative to start of run +Regime_year_FPL 0 +Regime_year_FPO 0 +Regime_year_FPS 0 +Regime_year_FVD 0 +Regime_year_FVV 0 +Regime_year_FVS 0 +Regime_year_FVB 0 +Regime_year_FVT 0 +Regime_year_FVO 0 +Regime_year_FMM 0 +Regime_year_FMN 0 +Regime_year_FBP 20 +Regime_year_FDD 0 +Regime_year_FDE 0 +Regime_year_FDS 0 +Regime_year_FDM 0 +Regime_year_FDP 0 +Regime_year_FDB 0 +Regime_year_FDC 20 +Regime_year_FDO 0 +Regime_year_FDF 20 +Regime_year_SHB 0 +Regime_year_SHD 0 +Regime_year_SHC 0 +Regime_year_SHP 0 +Regime_year_SHR 0 +Regime_year_SSK 0 +Regime_year_SB 20 +Regime_year_SP 0 +Regime_year_PIN 20 +Regime_year_REP 0 +Regime_year_WHB 20 +Regime_year_WHS 0 +Regime_year_WHT 20 +Regime_year_WDG 0 +Regime_year_CEP 20 +Regime_year_BFS 0 +Regime_year_BFF 20 +Regime_year_BFD 0 +Regime_year_BG 20 +Regime_year_BMD 0 +Regime_year_BML 20 +Regime_year_BMS 0 +Regime_year_PWN 20 +Regime_year_ZL 20 +Regime_year_BD 20 +Regime_year_MA 20 +Regime_year_MB 20 +Regime_year_SG 20 +Regime_year_BC 20 +Regime_year_ZG 20 +Regime_year_PL 0 +Regime_year_DF 0 +Regime_year_PS 0 +Regime_year_ZM 20 +Regime_year_ZS 20 +Regime_year_DL 0 +Regime_year_DR 0 +Regime_year_DC 0 + + +# Whether to consider regime shift in the assessment +Regime_year_assess_FPL 0 +Regime_year_assess_FPO 0 +Regime_year_assess_FPS 0 +Regime_year_assess_FVD 0 +Regime_year_assess_FVV 0 +Regime_year_assess_FVS 0 +Regime_year_assess_FVB 0 +Regime_year_assess_FVT 0 +Regime_year_assess_FVO 0 +Regime_year_assess_FMM 0 +Regime_year_assess_FMN 0 +Regime_year_assess_FBP 0 +Regime_year_assess_FDD 0 +Regime_year_assess_FDE 0 +Regime_year_assess_FDS 0 +Regime_year_assess_FDM 0 +Regime_year_assess_FDP 0 +Regime_year_assess_FDB 0 +Regime_year_assess_FDC 0 +Regime_year_assess_FDO 0 +Regime_year_assess_FDF 0 +Regime_year_assess_SHB 0 +Regime_year_assess_SHD 0 +Regime_year_assess_SHC 0 +Regime_year_assess_SHP 0 +Regime_year_assess_SHR 0 +Regime_year_assess_SSK 0 +Regime_year_assess_SB 0 +Regime_year_assess_SP 0 +Regime_year_assess_PIN 0 +Regime_year_assess_REP 0 +Regime_year_assess_WHB 0 +Regime_year_assess_WHS 0 +Regime_year_assess_WHT 0 +Regime_year_assess_WDG 0 +Regime_year_assess_CEP 0 +Regime_year_assess_BFS 0 +Regime_year_assess_BFF 0 +Regime_year_assess_BFD 0 +Regime_year_assess_BG 0 +Regime_year_assess_BMD 0 +Regime_year_assess_BML 0 +Regime_year_assess_BMS 0 +Regime_year_assess_PWN 0 +Regime_year_assess_ZL 0 +Regime_year_assess_BD 0 +Regime_year_assess_MA 0 +Regime_year_assess_MB 0 +Regime_year_assess_SG 0 +Regime_year_assess_BC 0 +Regime_year_assess_ZG 0 +Regime_year_assess_PL 0 +Regime_year_assess_DF 0 +Regime_year_assess_PS 0 +Regime_year_assess_ZM 0 +Regime_year_assess_ZS 0 +Regime_year_assess_DL 0 +Regime_year_assess_DR 0 +Regime_year_assess_DC 0 + + + + +# Recruitment deviation flag indicating whether recruiment deviaitons to be read in (1), or not (0) +RecDevFlag_FPL 0 +RecDevFlag_FPO 0 +RecDevFlag_FPS 0 +RecDevFlag_FVD 0 +RecDevFlag_FVV 0 +RecDevFlag_FVS 0 +RecDevFlag_FVB 0 +RecDevFlag_FVT 0 +RecDevFlag_FVO 0 +RecDevFlag_FMM 0 +RecDevFlag_FMN 0 +RecDevFlag_FBP 0 +RecDevFlag_FDD 0 +RecDevFlag_FDE 0 +RecDevFlag_FDS 0 +RecDevFlag_FDM 0 +RecDevFlag_FDP 0 +RecDevFlag_FDB 0 +RecDevFlag_FDC 0 +RecDevFlag_FDO 0 +RecDevFlag_FDF 0 +RecDevFlag_SHB 0 +RecDevFlag_SHD 0 +RecDevFlag_SHC 0 +RecDevFlag_SHP 0 +RecDevFlag_SHR 0 +RecDevFlag_SSK 0 +RecDevFlag_SB 0 +RecDevFlag_SP 0 +RecDevFlag_PIN 0 +RecDevFlag_REP 0 +RecDevFlag_WHB 0 +RecDevFlag_WHS 0 +RecDevFlag_WHT 0 +RecDevFlag_WDG 0 +RecDevFlag_CEP 0 +RecDevFlag_BFS 0 +RecDevFlag_BFF 0 +RecDevFlag_BFD 0 +RecDevFlag_BG 0 +RecDevFlag_BMD 0 +RecDevFlag_BML 0 +RecDevFlag_BMS 0 +RecDevFlag_PWN 0 +RecDevFlag_ZL 0 +RecDevFlag_BD 0 +RecDevFlag_MA 0 +RecDevFlag_MB 0 +RecDevFlag_SG 0 +RecDevFlag_BC 0 +RecDevFlag_ZG 0 +RecDevFlag_PL 0 +RecDevFlag_DF 0 +RecDevFlag_PS 0 +RecDevFlag_ZM 0 +RecDevFlag_ZS 0 +RecDevFlag_DL 0 +RecDevFlag_DR 0 +RecDevFlag_DC 0 + +# Recruitment deviation min year +RecDevMinYr_FPL 0 +RecDevMinYr_FPO 0 +RecDevMinYr_FPS 0 +RecDevMinYr_FVD 0 +RecDevMinYr_FVV 0 +RecDevMinYr_FVS 0 +RecDevMinYr_FVB 0 +RecDevMinYr_FVT 0 +RecDevMinYr_FVO 0 +RecDevMinYr_FMM 0 +RecDevMinYr_FMN 0 +RecDevMinYr_FBP 10 +RecDevMinYr_FDD 0 +RecDevMinYr_FDE 0 +RecDevMinYr_FDS 0 +RecDevMinYr_FDM 0 +RecDevMinYr_FDP 0 +RecDevMinYr_FDB 0 +RecDevMinYr_FDC 10 +RecDevMinYr_FDO 0 +RecDevMinYr_FDF 10 +RecDevMinYr_SHB 0 +RecDevMinYr_SHD 0 +RecDevMinYr_SHC 0 +RecDevMinYr_SHP 0 +RecDevMinYr_SHR 0 +RecDevMinYr_SSK 0 +RecDevMinYr_SB 10 +RecDevMinYr_SP 0 +RecDevMinYr_PIN 10 +RecDevMinYr_REP 0 +RecDevMinYr_WHB 10 +RecDevMinYr_WHS 0 +RecDevMinYr_WHT 10 +RecDevMinYr_WDG 0 +RecDevMinYr_CEP 10 +RecDevMinYr_BFS 0 +RecDevMinYr_BFF 10 +RecDevMinYr_BFD 0 +RecDevMinYr_BG 10 +RecDevMinYr_BMD 0 +RecDevMinYr_BML 10 +RecDevMinYr_BMS 0 +RecDevMinYr_PWN 10 +RecDevMinYr_ZL 10 +RecDevMinYr_BD 10 +RecDevMinYr_MA 10 +RecDevMinYr_MB 10 +RecDevMinYr_SG 10 +RecDevMinYr_BC 10 +RecDevMinYr_ZG 10 +RecDevMinYr_PL 0 +RecDevMinYr_DF 0 +RecDevMinYr_PS 0 +RecDevMinYr_ZM 10 +RecDevMinYr_ZS 10 +RecDevMinYr_DL 0 +RecDevMinYr_DR 0 +RecDevMinYr_DC 0 + +# Recruitment deviation max year +RecDevMaxYr_FPL 0 +RecDevMaxYr_FPO 0 +RecDevMaxYr_FPS 0 +RecDevMaxYr_FVD 0 +RecDevMaxYr_FVV 0 +RecDevMaxYr_FVS 0 +RecDevMaxYr_FVB 0 +RecDevMaxYr_FVT 0 +RecDevMaxYr_FVO 0 +RecDevMaxYr_FMM 0 +RecDevMaxYr_FMN 0 +RecDevMaxYr_FBP 25 +RecDevMaxYr_FDD 0 +RecDevMaxYr_FDE 0 +RecDevMaxYr_FDS 0 +RecDevMaxYr_FDM 0 +RecDevMaxYr_FDP 0 +RecDevMaxYr_FDB 0 +RecDevMaxYr_FDC 25 +RecDevMaxYr_FDO 0 +RecDevMaxYr_FDF 25 +RecDevMaxYr_SHB 0 +RecDevMaxYr_SHD 0 +RecDevMaxYr_SHC 0 +RecDevMaxYr_SHP 0 +RecDevMaxYr_SHR 0 +RecDevMaxYr_SSK 0 +RecDevMaxYr_SB 25 +RecDevMaxYr_SP 0 +RecDevMaxYr_PIN 25 +RecDevMaxYr_REP 0 +RecDevMaxYr_WHB 25 +RecDevMaxYr_WHS 0 +RecDevMaxYr_WHT 25 +RecDevMaxYr_WDG 0 +RecDevMaxYr_CEP 25 +RecDevMaxYr_BFS 0 +RecDevMaxYr_BFF 25 +RecDevMaxYr_BFD 0 +RecDevMaxYr_BG 25 +RecDevMaxYr_BMD 0 +RecDevMaxYr_BML 25 +RecDevMaxYr_BMS 0 +RecDevMaxYr_PWN 25 +RecDevMaxYr_ZL 25 +RecDevMaxYr_BD 25 +RecDevMaxYr_MA 25 +RecDevMaxYr_MB 25 +RecDevMaxYr_SG 25 +RecDevMaxYr_BC 25 +RecDevMaxYr_ZG 25 +RecDevMaxYr_PL 0 +RecDevMaxYr_DF 0 +RecDevMaxYr_PS 0 +RecDevMaxYr_ZM 25 +RecDevMaxYr_ZS 25 +RecDevMaxYr_DL 0 +RecDevMaxYr_DR 0 +RecDevMaxYr_DC 0 + + +# Flag indicating whether to generate auto-correlated recruitment deviations (1) or not (0) +AutoCorRecDev_FPL 0 +AutoCorRecDev_FPO 0 +AutoCorRecDev_FPS 0 +AutoCorRecDev_FVD 0 +AutoCorRecDev_FVV 0 +AutoCorRecDev_FVS 0 +AutoCorRecDev_FVB 0 +AutoCorRecDev_FVT 0 +AutoCorRecDev_FVO 0 +AutoCorRecDev_FMM 0 +AutoCorRecDev_FMN 0 +AutoCorRecDev_FBP 0 +AutoCorRecDev_FDD 0 +AutoCorRecDev_FDE 0 +AutoCorRecDev_FDS 0 +AutoCorRecDev_FDM 0 +AutoCorRecDev_FDP 0 +AutoCorRecDev_FDB 0 +AutoCorRecDev_FDC 0 +AutoCorRecDev_FDO 0 +AutoCorRecDev_FDF 0 +AutoCorRecDev_SHB 0 +AutoCorRecDev_SHD 0 +AutoCorRecDev_SHC 0 +AutoCorRecDev_SHP 0 +AutoCorRecDev_SHR 0 +AutoCorRecDev_SSK 0 +AutoCorRecDev_SB 0 +AutoCorRecDev_SP 0 +AutoCorRecDev_PIN 0 +AutoCorRecDev_REP 0 +AutoCorRecDev_WHB 0 +AutoCorRecDev_WHS 0 +AutoCorRecDev_WHT 0 +AutoCorRecDev_WDG 0 +AutoCorRecDev_CEP 0 +AutoCorRecDev_BFS 0 +AutoCorRecDev_BFF 0 +AutoCorRecDev_BFD 0 +AutoCorRecDev_BG 0 +AutoCorRecDev_BMD 0 +AutoCorRecDev_BML 0 +AutoCorRecDev_BMS 0 +AutoCorRecDev_PWN 0 +AutoCorRecDev_ZL 0 +AutoCorRecDev_BD 0 +AutoCorRecDev_MA 0 +AutoCorRecDev_MB 0 +AutoCorRecDev_SG 0 +AutoCorRecDev_BC 0 +AutoCorRecDev_ZG 0 +AutoCorRecDev_PL 0 +AutoCorRecDev_DF 0 +AutoCorRecDev_PS 0 +AutoCorRecDev_ZM 0 +AutoCorRecDev_ZS 0 +AutoCorRecDev_DL 0 +AutoCorRecDev_DR 0 +AutoCorRecDev_DC 0 + + +Ageing_error_FPL 3 +0 0 0 +Ageing_error_FPO 3 +0 0 0 +Ageing_error_FPS 3 +0 0 0 +Ageing_error_FVD 3 +0 0 0 +Ageing_error_FVV 3 +0 0 0 +Ageing_error_FVS 3 +0 0 0 +Ageing_error_FVB 3 +0 0 0 +Ageing_error_FVT 3 +0 0 0 +Ageing_error_FVO 3 +0 0 0 +Ageing_error_FMM 3 +0 0 0 +Ageing_error_FMN 3 +0 0 0 +Ageing_error_FBP 3 +0 0 0 +Ageing_error_FDD 3 +0 0 0 +Ageing_error_FDE 3 +0 0 0 +Ageing_error_FDS 3 +0 0 0 +Ageing_error_FDM 3 +0 0 0 +Ageing_error_FDP 3 +0 0 0 +Ageing_error_FDB 3 +0 0 0 +Ageing_error_FDC 3 +0 0 0 +Ageing_error_FDO 3 +0 0 0 +Ageing_error_FDF 3 +0 0 0 +Ageing_error_SHB 3 +0 0 0 +Ageing_error_SHD 3 +0 0 0 +Ageing_error_SHC 3 +0 0 0 +Ageing_error_SHP 3 +0 0 0 +Ageing_error_SHR 3 +0 0 0 +Ageing_error_SSK 3 +0 0 0 +Ageing_error_SB 3 +0 0 0 +Ageing_error_SP 3 +0 0 0 +Ageing_error_PIN 3 +0 0 0 +Ageing_error_REP 3 +0 0 0 +Ageing_error_WHB 3 +0 0 0 +Ageing_error_WHS 3 +0 0 0 +Ageing_error_WHT 3 +0 0 0 +Ageing_error_WDG 3 +0 0 0 +Ageing_error_CEP 3 +0 0 0 +Ageing_error_BFS 3 +0 0 0 +Ageing_error_BFF 3 +0 0 0 +Ageing_error_BFD 3 +0 0 0 +Ageing_error_BG 3 +0 0 0 +Ageing_error_BMD 3 +0 0 0 +Ageing_error_BML 3 +0 0 0 +Ageing_error_BMS 3 +0 0 0 +Ageing_error_PWN 3 +0 0 0 +Ageing_error_ZL 3 +0 0 0 +Ageing_error_BD 3 +0 0 0 +Ageing_error_MA 3 +0 0 0 +Ageing_error_MB 3 +0 0 0 +Ageing_error_SG 3 +0 0 0 +Ageing_error_BC 3 +0 0 0 +Ageing_error_ZG 3 +0 0 0 +Ageing_error_PL 3 +0 0 0 +Ageing_error_DF 3 +0 0 0 +Ageing_error_PS 3 +0 0 0 +Ageing_error_ZM 3 +0 0 0 +Ageing_error_ZS 3 +0 0 0 +Ageing_error_DL 3 +0 0 0 +Ageing_error_DR 3 +0 0 0 +Ageing_error_DC 3 +0 0 0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Mapping of boxes to regions for assessments +regID_FPL 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FPO 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FPS 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FVD 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FVV 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FVS 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FVB 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FVT 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FVO 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FMM 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FMN 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FBP 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FDD 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FDE 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FDS 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FDM 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FDP 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FDB 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FDC 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FDO 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_FDF 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_SHB 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_SHD 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_SHC 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_SHP 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_SHR 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_SSK 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_SB 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_SP 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_PIN 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_REP 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_WHB 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_WHS 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_WHT 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_WDG 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_CEP 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_BFS 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_BFF 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_BFD 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_BG 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_BMD 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +regID_BML 53 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 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0 0 0 0 0 0 0 0 0 0 +Fhist_ZL 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_BD 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_MA 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_MB 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_SG 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_BC 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_ZG 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_PL 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_DF 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_PS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_ZM 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_ZS 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_DL 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_DR 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +Fhist_DC 33 +0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +## Extra parameters needed for the SS3 files +Start_SelInflect_FPL 1 +0 +Start_SelInflect_FPO 1 +0 +Start_SelInflect_FPS 1 +0 +Start_SelInflect_FVD 1 +0 +Start_SelInflect_FVV 1 +0 +Start_SelInflect_FVS 1 +0 +Start_SelInflect_FVB 1 +0 +Start_SelInflect_FVT 1 +0 +Start_SelInflect_FVO 1 +0 +Start_SelInflect_FMM 1 +0 +Start_SelInflect_FMN 1 +0 +Start_SelInflect_FBP 1 +0 +Start_SelInflect_FDD 1 +0 +Start_SelInflect_FDE 1 +0 +Start_SelInflect_FDS 1 +0 +Start_SelInflect_FDM 1 +0 +Start_SelInflect_FDP 1 +0 +Start_SelInflect_FDB 1 +0 +Start_SelInflect_FDC 1 +0 +Start_SelInflect_FDO 1 +0 +Start_SelInflect_FDF 1 +0 +Start_SelInflect_SHB 1 +0 +Start_SelInflect_SHD 1 +0 +Start_SelInflect_SHC 1 +0 +Start_SelInflect_SHP 1 +0 +Start_SelInflect_SHR 1 +0 +Start_SelInflect_SSK 1 +0 +Start_SelInflect_SB 1 +0 +Start_SelInflect_SP 1 +0 +Start_SelInflect_PIN 1 +0 +Start_SelInflect_REP 1 +0 +Start_SelInflect_WHB 1 +0 +Start_SelInflect_WHS 1 +0 +Start_SelInflect_WHT 1 +0 +Start_SelInflect_WDG 1 +0 +Start_SelInflect_CEP 1 +0 +Start_SelInflect_BFS 1 +0 +Start_SelInflect_BFF 1 +0 +Start_SelInflect_BFD 1 +0 +Start_SelInflect_BG 1 +0 +Start_SelInflect_BMD 1 +0 +Start_SelInflect_BML 1 +0 +Start_SelInflect_BMS 1 +0 +Start_SelInflect_PWN 1 +0 +Start_SelInflect_ZL 1 +0 +Start_SelInflect_BD 1 +0 +Start_SelInflect_MA 1 +0 +Start_SelInflect_MB 1 +0 +Start_SelInflect_SG 1 +0 +Start_SelInflect_BC 1 +0 +Start_SelInflect_ZG 1 +0 +Start_SelInflect_PL 1 +0 +Start_SelInflect_DF 1 +0 +Start_SelInflect_PS 1 +0 +Start_SelInflect_ZM 1 +0 +Start_SelInflect_ZS 1 +0 +Start_SelInflect_DL 1 +0 +Start_SelInflect_DR 1 +0 +Start_SelInflect_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Selectivity width +Start_SelWidth_FPL 1 +0 +Start_SelWidth_FPO 1 +0 +Start_SelWidth_FPS 1 +0 +Start_SelWidth_FVD 1 +0 +Start_SelWidth_FVV 1 +0 +Start_SelWidth_FVS 1 +0 +Start_SelWidth_FVB 1 +0 +Start_SelWidth_FVT 1 +0 +Start_SelWidth_FVO 1 +0 +Start_SelWidth_FMM 1 +0 +Start_SelWidth_FMN 1 +0 +Start_SelWidth_FBP 1 +0 +Start_SelWidth_FDD 1 +0 +Start_SelWidth_FDE 1 +0 +Start_SelWidth_FDS 1 +0 +Start_SelWidth_FDM 1 +0 +Start_SelWidth_FDP 1 +0 +Start_SelWidth_FDB 1 +0 +Start_SelWidth_FDC 1 +0 +Start_SelWidth_FDO 1 +0 +Start_SelWidth_FDF 1 +0 +Start_SelWidth_SHB 1 +0 +Start_SelWidth_SHD 1 +0 +Start_SelWidth_SHC 1 +0 +Start_SelWidth_SHP 1 +0 +Start_SelWidth_SHR 1 +0 +Start_SelWidth_SSK 1 +0 +Start_SelWidth_SB 1 +0 +Start_SelWidth_SP 1 +0 +Start_SelWidth_PIN 1 +0 +Start_SelWidth_REP 1 +0 +Start_SelWidth_WHB 1 +0 +Start_SelWidth_WHS 1 +0 +Start_SelWidth_WHT 1 +0 +Start_SelWidth_WDG 1 +0 +Start_SelWidth_CEP 1 +0 +Start_SelWidth_BFS 1 +0 +Start_SelWidth_BFF 1 +0 +Start_SelWidth_BFD 1 +0 +Start_SelWidth_BG 1 +0 +Start_SelWidth_BMD 1 +0 +Start_SelWidth_BML 1 +0 +Start_SelWidth_BMS 1 +0 +Start_SelWidth_PWN 1 +0 +Start_SelWidth_ZL 1 +0 +Start_SelWidth_BD 1 +0 +Start_SelWidth_MA 1 +0 +Start_SelWidth_MB 1 +0 +Start_SelWidth_SG 1 +0 +Start_SelWidth_BC 1 +0 +Start_SelWidth_ZG 1 +0 +Start_SelWidth_PL 1 +0 +Start_SelWidth_DF 1 +0 +Start_SelWidth_PS 1 +0 +Start_SelWidth_ZM 1 +0 +Start_SelWidth_ZS 1 +0 +Start_SelWidth_DL 1 +0 +Start_SelWidth_DR 1 +0 +Start_SelWidth_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Retention inflection +Start_RetInflect_FPL 1 +0 +Start_RetInflect_FPO 1 +0 +Start_RetInflect_FPS 1 +0 +Start_RetInflect_FVD 1 +0 +Start_RetInflect_FVV 1 +0 +Start_RetInflect_FVS 1 +0 +Start_RetInflect_FVB 1 +0 +Start_RetInflect_FVT 1 +0 +Start_RetInflect_FVO 1 +0 +Start_RetInflect_FMM 1 +0 +Start_RetInflect_FMN 1 +0 +Start_RetInflect_FBP 1 +0 +Start_RetInflect_FDD 1 +0 +Start_RetInflect_FDE 1 +0 +Start_RetInflect_FDS 1 +0 +Start_RetInflect_FDM 1 +0 +Start_RetInflect_FDP 1 +0 +Start_RetInflect_FDB 1 +0 +Start_RetInflect_FDC 1 +0 +Start_RetInflect_FDO 1 +0 +Start_RetInflect_FDF 1 +0 +Start_RetInflect_SHB 1 +0 +Start_RetInflect_SHD 1 +0 +Start_RetInflect_SHC 1 +0 +Start_RetInflect_SHP 1 +0 +Start_RetInflect_SHR 1 +0 +Start_RetInflect_SSK 1 +0 +Start_RetInflect_SB 1 +0 +Start_RetInflect_SP 1 +0 +Start_RetInflect_PIN 1 +0 +Start_RetInflect_REP 1 +0 +Start_RetInflect_WHB 1 +0 +Start_RetInflect_WHS 1 +0 +Start_RetInflect_WHT 1 +0 +Start_RetInflect_WDG 1 +0 +Start_RetInflect_CEP 1 +0 +Start_RetInflect_BFS 1 +0 +Start_RetInflect_BFF 1 +0 +Start_RetInflect_BFD 1 +0 +Start_RetInflect_BG 1 +0 +Start_RetInflect_BMD 1 +0 +Start_RetInflect_BML 1 +0 +Start_RetInflect_BMS 1 +0 +Start_RetInflect_PWN 1 +0 +Start_RetInflect_ZL 1 +0 +Start_RetInflect_BD 1 +0 +Start_RetInflect_MA 1 +0 +Start_RetInflect_MB 1 +0 +Start_RetInflect_SG 1 +0 +Start_RetInflect_BC 1 +0 +Start_RetInflect_ZG 1 +0 +Start_RetInflect_PL 1 +0 +Start_RetInflect_DF 1 +0 +Start_RetInflect_PS 1 +0 +Start_RetInflect_ZM 1 +0 +Start_RetInflect_ZS 1 +0 +Start_RetInflect_DL 1 +0 +Start_RetInflect_DR 1 +0 +Start_RetInflect_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Retention slope +Start_RetSlope_FPL 1 +0 +Start_RetSlope_FPO 1 +0 +Start_RetSlope_FPS 1 +0 +Start_RetSlope_FVD 1 +0 +Start_RetSlope_FVV 1 +0 +Start_RetSlope_FVS 1 +0 +Start_RetSlope_FVB 1 +0 +Start_RetSlope_FVT 1 +0 +Start_RetSlope_FVO 1 +0 +Start_RetSlope_FMM 1 +0 +Start_RetSlope_FMN 1 +0 +Start_RetSlope_FBP 1 +0 +Start_RetSlope_FDD 1 +0 +Start_RetSlope_FDE 1 +0 +Start_RetSlope_FDS 1 +0 +Start_RetSlope_FDM 1 +0 +Start_RetSlope_FDP 1 +0 +Start_RetSlope_FDB 1 +0 +Start_RetSlope_FDC 1 +0 +Start_RetSlope_FDO 1 +0 +Start_RetSlope_FDF 1 +0 +Start_RetSlope_SHB 1 +0 +Start_RetSlope_SHD 1 +0 +Start_RetSlope_SHC 1 +0 +Start_RetSlope_SHP 1 +0 +Start_RetSlope_SHR 1 +0 +Start_RetSlope_SSK 1 +0 +Start_RetSlope_SB 1 +0 +Start_RetSlope_SP 1 +0 +Start_RetSlope_PIN 1 +0 +Start_RetSlope_REP 1 +0 +Start_RetSlope_WHB 1 +0 +Start_RetSlope_WHS 1 +0 +Start_RetSlope_WHT 1 +0 +Start_RetSlope_WDG 1 +0 +Start_RetSlope_CEP 1 +0 +Start_RetSlope_BFS 1 +0 +Start_RetSlope_BFF 1 +0 +Start_RetSlope_BFD 1 +0 +Start_RetSlope_BG 1 +0 +Start_RetSlope_BMD 1 +0 +Start_RetSlope_BML 1 +0 +Start_RetSlope_BMS 1 +0 +Start_RetSlope_PWN 1 +0 +Start_RetSlope_ZL 1 +0 +Start_RetSlope_BD 1 +0 +Start_RetSlope_MA 1 +0 +Start_RetSlope_MB 1 +0 +Start_RetSlope_SG 1 +0 +Start_RetSlope_BC 1 +0 +Start_RetSlope_ZG 1 +0 +Start_RetSlope_PL 1 +0 +Start_RetSlope_DF 1 +0 +Start_RetSlope_PS 1 +0 +Start_RetSlope_ZM 1 +0 +Start_RetSlope_ZS 1 +0 +Start_RetSlope_DL 1 +0 +Start_RetSlope_DR 1 +0 +Start_RetSlope_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +## Variance adjustment values +# Variance adjustment CPUE +Varadj_CPUE_FPL 1 +0 +Varadj_CPUE_FPO 1 +0 +Varadj_CPUE_FPS 1 +0 +Varadj_CPUE_FVD 1 +0 +Varadj_CPUE_FVV 1 +0 +Varadj_CPUE_FVS 1 +0 +Varadj_CPUE_FVB 1 +0 +Varadj_CPUE_FVT 1 +0 +Varadj_CPUE_FVO 1 +0 +Varadj_CPUE_FMM 1 +0 +Varadj_CPUE_FMN 1 +0 +Varadj_CPUE_FBP 1 +0 +Varadj_CPUE_FDD 1 +0 +Varadj_CPUE_FDE 1 +0 +Varadj_CPUE_FDS 1 +0 +Varadj_CPUE_FDM 1 +0 +Varadj_CPUE_FDP 1 +0 +Varadj_CPUE_FDB 1 +0 +Varadj_CPUE_FDC 1 +0 +Varadj_CPUE_FDO 1 +0 +Varadj_CPUE_FDF 1 +0 +Varadj_CPUE_SHB 1 +0 +Varadj_CPUE_SHD 1 +0 +Varadj_CPUE_SHC 1 +0 +Varadj_CPUE_SHP 1 +0 +Varadj_CPUE_SHR 1 +0 +Varadj_CPUE_SSK 1 +0 +Varadj_CPUE_SB 1 +0 +Varadj_CPUE_SP 1 +0 +Varadj_CPUE_PIN 1 +0 +Varadj_CPUE_REP 1 +0 +Varadj_CPUE_WHB 1 +0 +Varadj_CPUE_WHS 1 +0 +Varadj_CPUE_WHT 1 +0 +Varadj_CPUE_WDG 1 +0 +Varadj_CPUE_CEP 1 +0 +Varadj_CPUE_BFS 1 +0 +Varadj_CPUE_BFF 1 +0 +Varadj_CPUE_BFD 1 +0 +Varadj_CPUE_BG 1 +0 +Varadj_CPUE_BMD 1 +0 +Varadj_CPUE_BML 1 +0 +Varadj_CPUE_BMS 1 +0 +Varadj_CPUE_PWN 1 +0 +Varadj_CPUE_ZL 1 +0 +Varadj_CPUE_BD 1 +0 +Varadj_CPUE_MA 1 +0 +Varadj_CPUE_MB 1 +0 +Varadj_CPUE_SG 1 +0 +Varadj_CPUE_BC 1 +0 +Varadj_CPUE_ZG 1 +0 +Varadj_CPUE_PL 1 +0 +Varadj_CPUE_DF 1 +0 +Varadj_CPUE_PS 1 +0 +Varadj_CPUE_ZM 1 +0 +Varadj_CPUE_ZS 1 +0 +Varadj_CPUE_DL 1 +0 +Varadj_CPUE_DR 1 +0 +Varadj_CPUE_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Variance adjustment discard +Varadj_discard_FPL 1 +0 +Varadj_discard_FPO 1 +0 +Varadj_discard_FPS 1 +0 +Varadj_discard_FVD 1 +0 +Varadj_discard_FVV 1 +0 +Varadj_discard_FVS 1 +0 +Varadj_discard_FVB 1 +0 +Varadj_discard_FVT 1 +0 +Varadj_discard_FVO 1 +0 +Varadj_discard_FMM 1 +0 +Varadj_discard_FMN 1 +0 +Varadj_discard_FBP 1 +0 +Varadj_discard_FDD 1 +0 +Varadj_discard_FDE 1 +0 +Varadj_discard_FDS 1 +0 +Varadj_discard_FDM 1 +0 +Varadj_discard_FDP 1 +0 +Varadj_discard_FDB 1 +0 +Varadj_discard_FDC 1 +0 +Varadj_discard_FDO 1 +0 +Varadj_discard_FDF 1 +0 +Varadj_discard_SHB 1 +0 +Varadj_discard_SHD 1 +0 +Varadj_discard_SHC 1 +0 +Varadj_discard_SHP 1 +0 +Varadj_discard_SHR 1 +0 +Varadj_discard_SSK 1 +0 +Varadj_discard_SB 1 +0 +Varadj_discard_SP 1 +0 +Varadj_discard_PIN 1 +0 +Varadj_discard_REP 1 +0 +Varadj_discard_WHB 1 +0 +Varadj_discard_WHS 1 +0 +Varadj_discard_WHT 1 +0 +Varadj_discard_WDG 1 +0 +Varadj_discard_CEP 1 +0 +Varadj_discard_BFS 1 +0 +Varadj_discard_BFF 1 +0 +Varadj_discard_BFD 1 +0 +Varadj_discard_BG 1 +0 +Varadj_discard_BMD 1 +0 +Varadj_discard_BML 1 +0 +Varadj_discard_BMS 1 +0 +Varadj_discard_PWN 1 +0 +Varadj_discard_ZL 1 +0 +Varadj_discard_BD 1 +0 +Varadj_discard_MA 1 +0 +Varadj_discard_MB 1 +0 +Varadj_discard_SG 1 +0 +Varadj_discard_BC 1 +0 +Varadj_discard_ZG 1 +0 +Varadj_discard_PL 1 +0 +Varadj_discard_DF 1 +0 +Varadj_discard_PS 1 +0 +Varadj_discard_ZM 1 +0 +Varadj_discard_ZS 1 +0 +Varadj_discard_DL 1 +0 +Varadj_discard_DR 1 +0 +Varadj_discard_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Variance adjustment length +Varadj_length_FPL 1 +0 +Varadj_length_FPO 1 +0 +Varadj_length_FPS 1 +0 +Varadj_length_FVD 1 +0 +Varadj_length_FVV 1 +0 +Varadj_length_FVS 1 +0 +Varadj_length_FVB 1 +0 +Varadj_length_FVT 1 +0 +Varadj_length_FVO 1 +0 +Varadj_length_FMM 1 +0 +Varadj_length_FMN 1 +0 +Varadj_length_FBP 1 +0 +Varadj_length_FDD 1 +0 +Varadj_length_FDE 1 +0 +Varadj_length_FDS 1 +0 +Varadj_length_FDM 1 +0 +Varadj_length_FDP 1 +0 +Varadj_length_FDB 1 +0 +Varadj_length_FDC 1 +0 +Varadj_length_FDO 1 +0 +Varadj_length_FDF 1 +0 +Varadj_length_SHB 1 +0 +Varadj_length_SHD 1 +0 +Varadj_length_SHC 1 +0 +Varadj_length_SHP 1 +0 +Varadj_length_SHR 1 +0 +Varadj_length_SSK 1 +0 +Varadj_length_SB 1 +0 +Varadj_length_SP 1 +0 +Varadj_length_PIN 1 +0 +Varadj_length_REP 1 +0 +Varadj_length_WHB 1 +0 +Varadj_length_WHS 1 +0 +Varadj_length_WHT 1 +0 +Varadj_length_WDG 1 +0 +Varadj_length_CEP 1 +0 +Varadj_length_BFS 1 +0 +Varadj_length_BFF 1 +0 +Varadj_length_BFD 1 +0 +Varadj_length_BG 1 +0 +Varadj_length_BMD 1 +0 +Varadj_length_BML 1 +0 +Varadj_length_BMS 1 +0 +Varadj_length_PWN 1 +0 +Varadj_length_ZL 1 +0 +Varadj_length_BD 1 +0 +Varadj_length_MA 1 +0 +Varadj_length_MB 1 +0 +Varadj_length_SG 1 +0 +Varadj_length_BC 1 +0 +Varadj_length_ZG 1 +0 +Varadj_length_PL 1 +0 +Varadj_length_DF 1 +0 +Varadj_length_PS 1 +0 +Varadj_length_ZM 1 +0 +Varadj_length_ZS 1 +0 +Varadj_length_DL 1 +0 +Varadj_length_DR 1 +0 +Varadj_length_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Variance adjustment age +Varadj_age_FPL 1 +0 +Varadj_age_FPO 1 +0 +Varadj_age_FPS 1 +0 +Varadj_age_FVD 1 +0 +Varadj_age_FVV 1 +0 +Varadj_age_FVS 1 +0 +Varadj_age_FVB 1 +0 +Varadj_age_FVT 1 +0 +Varadj_age_FVO 1 +0 +Varadj_age_FMM 1 +0 +Varadj_age_FMN 1 +0 +Varadj_age_FBP 1 +0 +Varadj_age_FDD 1 +0 +Varadj_age_FDE 1 +0 +Varadj_age_FDS 1 +0 +Varadj_age_FDM 1 +0 +Varadj_age_FDP 1 +0 +Varadj_age_FDB 1 +0 +Varadj_age_FDC 1 +0 +Varadj_age_FDO 1 +0 +Varadj_age_FDF 1 +0 +Varadj_age_SHB 1 +0 +Varadj_age_SHD 1 +0 +Varadj_age_SHC 1 +0 +Varadj_age_SHP 1 +0 +Varadj_age_SHR 1 +0 +Varadj_age_SSK 1 +0 +Varadj_age_SB 1 +0 +Varadj_age_SP 1 +0 +Varadj_age_PIN 1 +0 +Varadj_age_REP 1 +0 +Varadj_age_WHB 1 +0 +Varadj_age_WHS 1 +0 +Varadj_age_WHT 1 +0 +Varadj_age_WDG 1 +0 +Varadj_age_CEP 1 +0 +Varadj_age_BFS 1 +0 +Varadj_age_BFF 1 +0 +Varadj_age_BFD 1 +0 +Varadj_age_BG 1 +0 +Varadj_age_BMD 1 +0 +Varadj_age_BML 1 +0 +Varadj_age_BMS 1 +0 +Varadj_age_PWN 1 +0 +Varadj_age_ZL 1 +0 +Varadj_age_BD 1 +0 +Varadj_age_MA 1 +0 +Varadj_age_MB 1 +0 +Varadj_age_SG 1 +0 +Varadj_age_BC 1 +0 +Varadj_age_ZG 1 +0 +Varadj_age_PL 1 +0 +Varadj_age_DF 1 +0 +Varadj_age_PS 1 +0 +Varadj_age_ZM 1 +0 +Varadj_age_ZS 1 +0 +Varadj_age_DL 1 +0 +Varadj_age_DR 1 +0 +Varadj_age_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +## Stock, sex and age parameters +# Starting assessment natural mortality by sex, stock and age +FPL0_MzeroStock1 1 +0 +FPO0_MzeroStock1 1 +0 +FPS0_MzeroStock1 1 +0 +FVD0_MzeroStock1 1 +0 +FVV0_MzeroStock1 1 +0 +FVS0_MzeroStock1 1 +0 +FVB0_MzeroStock1 1 +0 +FVT0_MzeroStock1 1 +0 +FVO0_MzeroStock1 1 +0 +FMM0_MzeroStock1 1 +0 +FMN0_MzeroStock1 1 +0 +FBP0_MzeroStock1 1 +0 +FDD0_MzeroStock1 1 +0 +FDE0_MzeroStock1 1 +0 +FDS0_MzeroStock1 1 +0 +FDM0_MzeroStock1 1 +0 +FDP0_MzeroStock1 1 +0 +FDB0_MzeroStock1 1 +0 +FDC0_MzeroStock1 1 +0 +FDO0_MzeroStock1 1 +0 +FDF0_MzeroStock1 1 +0 +SHB0_MzeroStock1 1 +0 +SHD0_MzeroStock1 1 +0 +SHC0_MzeroStock1 1 +0 +SHP0_MzeroStock1 1 +0 +SHR0_MzeroStock1 1 +0 +SSK0_MzeroStock1 1 +0 +SB0_MzeroStock1 1 +0 +SP0_MzeroStock1 1 +0 +PIN0_MzeroStock1 1 +0 +REP0_MzeroStock1 1 +0 +WHB0_MzeroStock1 1 +0 +WHS0_MzeroStock1 1 +0 +WHT0_MzeroStock1 1 +0 +WDG0_MzeroStock1 1 +0 +CEP0_MzeroStock1 1 +0 +BFS0_MzeroStock1 1 +0 +BFF0_MzeroStock1 1 +0 +BFD0_MzeroStock1 1 +0 +BG0_MzeroStock1 1 +0 +BMD0_MzeroStock1 1 +0 +BML0_MzeroStock1 1 +0 +BMS0_MzeroStock1 1 +0 +PWN0_MzeroStock1 1 +0 +ZL0_MzeroStock1 1 +0 +BD0_MzeroStock1 1 +0 +MA0_MzeroStock1 1 +0 +MB0_MzeroStock1 1 +0 +SG0_MzeroStock1 1 +0 +BC0_MzeroStock1 1 +0 +ZG0_MzeroStock1 1 +0 +PL0_MzeroStock1 1 +0 +DF0_MzeroStock1 1 +0 +PS0_MzeroStock1 1 +0 +ZM0_MzeroStock1 1 +0 +ZS0_MzeroStock1 1 +0 +DL0_MzeroStock1 1 +0 +DR0_MzeroStock1 1 +0 +DC0_MzeroStock1 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +FPL0_MeanLenAgeStock1 1 +0 +FPO0_MeanLenAgeStock1 1 +0 +FPS0_MeanLenAgeStock1 1 +0 +FVD0_MeanLenAgeStock1 1 +0 +FVV0_MeanLenAgeStock1 1 +0 +FVS0_MeanLenAgeStock1 1 +0 +FVB0_MeanLenAgeStock1 1 +0 +FVT0_MeanLenAgeStock1 1 +0 +FVO0_MeanLenAgeStock1 1 +0 +FMM0_MeanLenAgeStock1 1 +0 +FMN0_MeanLenAgeStock1 1 +0 +FBP0_MeanLenAgeStock1 1 +0 +FDD0_MeanLenAgeStock1 1 +0 +FDE0_MeanLenAgeStock1 1 +0 +FDS0_MeanLenAgeStock1 1 +0 +FDM0_MeanLenAgeStock1 1 +0 +FDP0_MeanLenAgeStock1 1 +0 +FDB0_MeanLenAgeStock1 1 +0 +FDC0_MeanLenAgeStock1 1 +0 +FDO0_MeanLenAgeStock1 1 +0 +FDF0_MeanLenAgeStock1 1 +0 +SHB0_MeanLenAgeStock1 1 +0 +SHD0_MeanLenAgeStock1 1 +0 +SHC0_MeanLenAgeStock1 1 +0 +SHP0_MeanLenAgeStock1 1 +0 +SHR0_MeanLenAgeStock1 1 +0 +SSK0_MeanLenAgeStock1 1 +0 +SB0_MeanLenAgeStock1 1 +0 +SP0_MeanLenAgeStock1 1 +0 +PIN0_MeanLenAgeStock1 1 +0 +REP0_MeanLenAgeStock1 1 +0 +WHB0_MeanLenAgeStock1 1 +0 +WHS0_MeanLenAgeStock1 1 +0 +WHT0_MeanLenAgeStock1 1 +0 +WDG0_MeanLenAgeStock1 1 +0 +CEP0_MeanLenAgeStock1 1 +0 +BFS0_MeanLenAgeStock1 1 +0 +BFF0_MeanLenAgeStock1 1 +0 +BFD0_MeanLenAgeStock1 1 +0 +BG0_MeanLenAgeStock1 1 +0 +BMD0_MeanLenAgeStock1 1 +0 +BML0_MeanLenAgeStock1 1 +0 +BMS0_MeanLenAgeStock1 1 +0 +PWN0_MeanLenAgeStock1 1 +0 +ZL0_MeanLenAgeStock1 1 +0 +BD0_MeanLenAgeStock1 1 +0 +MA0_MeanLenAgeStock1 1 +0 +MB0_MeanLenAgeStock1 1 +0 +SG0_MeanLenAgeStock1 1 +0 +BC0_MeanLenAgeStock1 1 +0 +ZG0_MeanLenAgeStock1 1 +0 +PL0_MeanLenAgeStock1 1 +0 +DF0_MeanLenAgeStock1 1 +0 +PS0_MeanLenAgeStock1 1 +0 +ZM0_MeanLenAgeStock1 1 +0 +ZS0_MeanLenAgeStock1 1 +0 +DL0_MeanLenAgeStock1 1 +0 +DR0_MeanLenAgeStock1 1 +0 +DC0_MeanLenAgeStock1 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# CV of length-at-age by stock and sex for age 0 +FPL_CvLA0Stock1 1 +0 +FPO_CvLA0Stock1 1 +0 +FPS_CvLA0Stock1 1 +0 +FVD_CvLA0Stock1 1 +0 +FVV_CvLA0Stock1 1 +0 +FVS_CvLA0Stock1 1 +0 +FVB_CvLA0Stock1 1 +0 +FVT_CvLA0Stock1 1 +0 +FVO_CvLA0Stock1 1 +0 +FMM_CvLA0Stock1 1 +0 +FMN_CvLA0Stock1 1 +0 +FBP_CvLA0Stock1 1 +0 +FDD_CvLA0Stock1 1 +0 +FDE_CvLA0Stock1 1 +0 +FDS_CvLA0Stock1 1 +0 +FDM_CvLA0Stock1 1 +0 +FDP_CvLA0Stock1 1 +0 +FDB_CvLA0Stock1 1 +0 +FDC_CvLA0Stock1 1 +0 +FDO_CvLA0Stock1 1 +0 +FDF_CvLA0Stock1 1 +0 +SHB_CvLA0Stock1 1 +0 +SHD_CvLA0Stock1 1 +0 +SHC_CvLA0Stock1 1 +0 +SHP_CvLA0Stock1 1 +0 +SHR_CvLA0Stock1 1 +0 +SSK_CvLA0Stock1 1 +0 +SB_CvLA0Stock1 1 +0 +SP_CvLA0Stock1 1 +0 +PIN_CvLA0Stock1 1 +0 +REP_CvLA0Stock1 1 +0 +WHB_CvLA0Stock1 1 +0 +WHS_CvLA0Stock1 1 +0 +WHT_CvLA0Stock1 1 +0 +WDG_CvLA0Stock1 1 +0 +CEP_CvLA0Stock1 1 +0 +BFS_CvLA0Stock1 1 +0 +BFF_CvLA0Stock1 1 +0 +BFD_CvLA0Stock1 1 +0 +BG_CvLA0Stock1 1 +0 +BMD_CvLA0Stock1 1 +0 +BML_CvLA0Stock1 1 +0 +BMS_CvLA0Stock1 1 +0 +PWN_CvLA0Stock1 1 +0 +ZL_CvLA0Stock1 1 +0 +BD_CvLA0Stock1 1 +0 +MA_CvLA0Stock1 1 +0 +MB_CvLA0Stock1 1 +0 +SG_CvLA0Stock1 1 +0 +BC_CvLA0Stock1 1 +0 +ZG_CvLA0Stock1 1 +0 +PL_CvLA0Stock1 1 +0 +DF_CvLA0Stock1 1 +0 +PS_CvLA0Stock1 1 +0 +ZM_CvLA0Stock1 1 +0 +ZS_CvLA0Stock1 1 +0 +DL_CvLA0Stock1 1 +0 +DR_CvLA0Stock1 1 +0 +DC_CvLA0Stock1 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# CV of length-at-age by stock and sex for max age +FPL_CvLAmaxStock1 1 +0 +FPO_CvLAmaxStock1 1 +0 +FPS_CvLAmaxStock1 1 +0 +FVD_CvLAmaxStock1 1 +0 +FVV_CvLAmaxStock1 1 +0 +FVS_CvLAmaxStock1 1 +0 +FVB_CvLAmaxStock1 1 +0 +FVT_CvLAmaxStock1 1 +0 +FVO_CvLAmaxStock1 1 +0 +FMM_CvLAmaxStock1 1 +0 +FMN_CvLAmaxStock1 1 +0 +FBP_CvLAmaxStock1 1 +0 +FDD_CvLAmaxStock1 1 +0 +FDE_CvLAmaxStock1 1 +0 +FDS_CvLAmaxStock1 1 +0 +FDM_CvLAmaxStock1 1 +0 +FDP_CvLAmaxStock1 1 +0 +FDB_CvLAmaxStock1 1 +0 +FDC_CvLAmaxStock1 1 +0 +FDO_CvLAmaxStock1 1 +0 +FDF_CvLAmaxStock1 1 +0 +SHB_CvLAmaxStock1 1 +0 +SHD_CvLAmaxStock1 1 +0 +SHC_CvLAmaxStock1 1 +0 +SHP_CvLAmaxStock1 1 +0 +SHR_CvLAmaxStock1 1 +0 +SSK_CvLAmaxStock1 1 +0 +SB_CvLAmaxStock1 1 +0 +SP_CvLAmaxStock1 1 +0 +PIN_CvLAmaxStock1 1 +0 +REP_CvLAmaxStock1 1 +0 +WHB_CvLAmaxStock1 1 +0 +WHS_CvLAmaxStock1 1 +0 +WHT_CvLAmaxStock1 1 +0 +WDG_CvLAmaxStock1 1 +0 +CEP_CvLAmaxStock1 1 +0 +BFS_CvLAmaxStock1 1 +0 +BFF_CvLAmaxStock1 1 +0 +BFD_CvLAmaxStock1 1 +0 +BG_CvLAmaxStock1 1 +0 +BMD_CvLAmaxStock1 1 +0 +BML_CvLAmaxStock1 1 +0 +BMS_CvLAmaxStock1 1 +0 +PWN_CvLAmaxStock1 1 +0 +ZL_CvLAmaxStock1 1 +0 +BD_CvLAmaxStock1 1 +0 +MA_CvLAmaxStock1 1 +0 +MB_CvLAmaxStock1 1 +0 +SG_CvLAmaxStock1 1 +0 +BC_CvLAmaxStock1 1 +0 +ZG_CvLAmaxStock1 1 +0 +PL_CvLAmaxStock1 1 +0 +DF_CvLAmaxStock1 1 +0 +PS_CvLAmaxStock1 1 +0 +ZM_CvLAmaxStock1 1 +0 +ZS_CvLAmaxStock1 1 +0 +DL_CvLAmaxStock1 1 +0 +DR_CvLAmaxStock1 1 +0 +DC_CvLAmaxStock1 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Weight-length relationship coefficient by stock and sex +FPL_WtlenaStock1 1 +0 +FPO_WtlenaStock1 1 +0 +FPS_WtlenaStock1 1 +0 +FVD_WtlenaStock1 1 +0 +FVV_WtlenaStock1 1 +0 +FVS_WtlenaStock1 1 +0 +FVB_WtlenaStock1 1 +0 +FVT_WtlenaStock1 1 +0 +FVO_WtlenaStock1 1 +0 +FMM_WtlenaStock1 1 +0 +FMN_WtlenaStock1 1 +0 +FBP_WtlenaStock1 1 +0 +FDD_WtlenaStock1 1 +0 +FDE_WtlenaStock1 1 +0 +FDS_WtlenaStock1 1 +0 +FDM_WtlenaStock1 1 +0 +FDP_WtlenaStock1 1 +0 +FDB_WtlenaStock1 1 +0 +FDC_WtlenaStock1 1 +0 +FDO_WtlenaStock1 1 +0 +FDF_WtlenaStock1 1 +0 +SHB_WtlenaStock1 1 +0 +SHD_WtlenaStock1 1 +0 +SHC_WtlenaStock1 1 +0 +SHP_WtlenaStock1 1 +0 +SHR_WtlenaStock1 1 +0 +SSK_WtlenaStock1 1 +0 +SB_WtlenaStock1 1 +0 +SP_WtlenaStock1 1 +0 +PIN_WtlenaStock1 1 +0 +REP_WtlenaStock1 1 +0 +WHB_WtlenaStock1 1 +0 +WHS_WtlenaStock1 1 +0 +WHT_WtlenaStock1 1 +0 +WDG_WtlenaStock1 1 +0 +CEP_WtlenaStock1 1 +0 +BFS_WtlenaStock1 1 +0 +BFF_WtlenaStock1 1 +0 +BFD_WtlenaStock1 1 +0 +BG_WtlenaStock1 1 +0 +BMD_WtlenaStock1 1 +0 +BML_WtlenaStock1 1 +0 +BMS_WtlenaStock1 1 +0 +PWN_WtlenaStock1 1 +0 +ZL_WtlenaStock1 1 +0 +BD_WtlenaStock1 1 +0 +MA_WtlenaStock1 1 +0 +MB_WtlenaStock1 1 +0 +SG_WtlenaStock1 1 +0 +BC_WtlenaStock1 1 +0 +ZG_WtlenaStock1 1 +0 +PL_WtlenaStock1 1 +0 +DF_WtlenaStock1 1 +0 +PS_WtlenaStock1 1 +0 +ZM_WtlenaStock1 1 +0 +ZS_WtlenaStock1 1 +0 +DL_WtlenaStock1 1 +0 +DR_WtlenaStock1 1 +0 +DC_WtlenaStock1 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Weight-length relationship exponent by stock and sex +FPL_WtlenbStock1 1 +0 +FPO_WtlenbStock1 1 +0 +FPS_WtlenbStock1 1 +0 +FVD_WtlenbStock1 1 +0 +FVV_WtlenbStock1 1 +0 +FVS_WtlenbStock1 1 +0 +FVB_WtlenbStock1 1 +0 +FVT_WtlenbStock1 1 +0 +FVO_WtlenbStock1 1 +0 +FMM_WtlenbStock1 1 +0 +FMN_WtlenbStock1 1 +0 +FBP_WtlenbStock1 1 +0 +FDD_WtlenbStock1 1 +0 +FDE_WtlenbStock1 1 +0 +FDS_WtlenbStock1 1 +0 +FDM_WtlenbStock1 1 +0 +FDP_WtlenbStock1 1 +0 +FDB_WtlenbStock1 1 +0 +FDC_WtlenbStock1 1 +0 +FDO_WtlenbStock1 1 +0 +FDF_WtlenbStock1 1 +0 +SHB_WtlenbStock1 1 +0 +SHD_WtlenbStock1 1 +0 +SHC_WtlenbStock1 1 +0 +SHP_WtlenbStock1 1 +0 +SHR_WtlenbStock1 1 +0 +SSK_WtlenbStock1 1 +0 +SB_WtlenbStock1 1 +0 +SP_WtlenbStock1 1 +0 +PIN_WtlenbStock1 1 +0 +REP_WtlenbStock1 1 +0 +WHB_WtlenbStock1 1 +0 +WHS_WtlenbStock1 1 +0 +WHT_WtlenbStock1 1 +0 +WDG_WtlenbStock1 1 +0 +CEP_WtlenbStock1 1 +0 +BFS_WtlenbStock1 1 +0 +BFF_WtlenbStock1 1 +0 +BFD_WtlenbStock1 1 +0 +BG_WtlenbStock1 1 +0 +BMD_WtlenbStock1 1 +0 +BML_WtlenbStock1 1 +0 +BMS_WtlenbStock1 1 +0 +PWN_WtlenbStock1 1 +0 +ZL_WtlenbStock1 1 +0 +BD_WtlenbStock1 1 +0 +MA_WtlenbStock1 1 +0 +MB_WtlenbStock1 1 +0 +SG_WtlenbStock1 1 +0 +BC_WtlenbStock1 1 +0 +ZG_WtlenbStock1 1 +0 +PL_WtlenbStock1 1 +0 +DF_WtlenbStock1 1 +0 +PS_WtlenbStock1 1 +0 +ZM_WtlenbStock1 1 +0 +ZS_WtlenbStock1 1 +0 +DL_WtlenbStock1 1 +0 +DR_WtlenbStock1 1 +0 +DC_WtlenbStock1 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Von Bert Linfinity by stock and sex (dummy values if length at age input directly) +FPL_VBLinfStock1 1 +0 +FPO_VBLinfStock1 1 +0 +FPS_VBLinfStock1 1 +0 +FVD_VBLinfStock1 1 +0 +FVV_VBLinfStock1 1 +0 +FVS_VBLinfStock1 1 +0 +FVB_VBLinfStock1 1 +0 +FVT_VBLinfStock1 1 +0 +FVO_VBLinfStock1 1 +0 +FMM_VBLinfStock1 1 +0 +FMN_VBLinfStock1 1 +0 +FBP_VBLinfStock1 1 +0 +FDD_VBLinfStock1 1 +0 +FDE_VBLinfStock1 1 +0 +FDS_VBLinfStock1 1 +0 +FDM_VBLinfStock1 1 +0 +FDP_VBLinfStock1 1 +0 +FDB_VBLinfStock1 1 +0 +FDC_VBLinfStock1 1 +0 +FDO_VBLinfStock1 1 +0 +FDF_VBLinfStock1 1 +0 +SHB_VBLinfStock1 1 +0 +SHD_VBLinfStock1 1 +0 +SHC_VBLinfStock1 1 +0 +SHP_VBLinfStock1 1 +0 +SHR_VBLinfStock1 1 +0 +SSK_VBLinfStock1 1 +0 +SB_VBLinfStock1 1 +0 +SP_VBLinfStock1 1 +0 +PIN_VBLinfStock1 1 +0 +REP_VBLinfStock1 1 +0 +WHB_VBLinfStock1 1 +0 +WHS_VBLinfStock1 1 +0 +WHT_VBLinfStock1 1 +0 +WDG_VBLinfStock1 1 +0 +CEP_VBLinfStock1 1 +0 +BFS_VBLinfStock1 1 +0 +BFF_VBLinfStock1 1 +0 +BFD_VBLinfStock1 1 +0 +BG_VBLinfStock1 1 +0 +BMD_VBLinfStock1 1 +0 +BML_VBLinfStock1 1 +0 +BMS_VBLinfStock1 1 +0 +PWN_VBLinfStock1 1 +0 +ZL_VBLinfStock1 1 +0 +BD_VBLinfStock1 1 +0 +MA_VBLinfStock1 1 +0 +MB_VBLinfStock1 1 +0 +SG_VBLinfStock1 1 +0 +BC_VBLinfStock1 1 +0 +ZG_VBLinfStock1 1 +0 +PL_VBLinfStock1 1 +0 +DF_VBLinfStock1 1 +0 +PS_VBLinfStock1 1 +0 +ZM_VBLinfStock1 1 +0 +ZS_VBLinfStock1 1 +0 +DL_VBLinfStock1 1 +0 +DR_VBLinfStock1 1 +0 +DC_VBLinfStock1 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Von Bert Linfinity by stock and sex (dummy values if length at age input directly, if length at age input directly still need values here for control file)) +FPL_VBkStock1 1 +0 +FPO_VBkStock1 1 +0 +FPS_VBkStock1 1 +0 +FVD_VBkStock1 1 +0 +FVV_VBkStock1 1 +0 +FVS_VBkStock1 1 +0 +FVB_VBkStock1 1 +0 +FVT_VBkStock1 1 +0 +FVO_VBkStock1 1 +0 +FMM_VBkStock1 1 +0 +FMN_VBkStock1 1 +0 +FBP_VBkStock1 1 +0 +FDD_VBkStock1 1 +0 +FDE_VBkStock1 1 +0 +FDS_VBkStock1 1 +0 +FDM_VBkStock1 1 +0 +FDP_VBkStock1 1 +0 +FDB_VBkStock1 1 +0 +FDC_VBkStock1 1 +0 +FDO_VBkStock1 1 +0 +FDF_VBkStock1 1 +0 +SHB_VBkStock1 1 +0 +SHD_VBkStock1 1 +0 +SHC_VBkStock1 1 +0 +SHP_VBkStock1 1 +0 +SHR_VBkStock1 1 +0 +SSK_VBkStock1 1 +0 +SB_VBkStock1 1 +0 +SP_VBkStock1 1 +0 +PIN_VBkStock1 1 +0 +REP_VBkStock1 1 +0 +WHB_VBkStock1 1 +0 +WHS_VBkStock1 1 +0 +WHT_VBkStock1 1 +0 +WDG_VBkStock1 1 +0 +CEP_VBkStock1 1 +0 +BFS_VBkStock1 1 +0 +BFF_VBkStock1 1 +0 +BFD_VBkStock1 1 +0 +BG_VBkStock1 1 +0 +BMD_VBkStock1 1 +0 +BML_VBkStock1 1 +0 +BMS_VBkStock1 1 +0 +PWN_VBkStock1 1 +0 +ZL_VBkStock1 1 +0 +BD_VBkStock1 1 +0 +MA_VBkStock1 1 +0 +MB_VBkStock1 1 +0 +SG_VBkStock1 1 +0 +BC_VBkStock1 1 +0 +ZG_VBkStock1 1 +0 +PL_VBkStock1 1 +0 +DF_VBkStock1 1 +0 +PS_VBkStock1 1 +0 +ZM_VBkStock1 1 +0 +ZS_VBkStock1 1 +0 +DL_VBkStock1 1 +0 +DR_VBkStock1 1 +0 +DC_VBkStock1 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Von B t0 by stock and sex (dummy values if length at age input directly) +FPL_VBt0Stock1 1 +0 +FPO_VBt0Stock1 1 +0 +FPS_VBt0Stock1 1 +0 +FVD_VBt0Stock1 1 +0 +FVV_VBt0Stock1 1 +0 +FVS_VBt0Stock1 1 +0 +FVB_VBt0Stock1 1 +0 +FVT_VBt0Stock1 1 +0 +FVO_VBt0Stock1 1 +0 +FMM_VBt0Stock1 1 +0 +FMN_VBt0Stock1 1 +0 +FBP_VBt0Stock1 1 +0 +FDD_VBt0Stock1 1 +0 +FDE_VBt0Stock1 1 +0 +FDS_VBt0Stock1 1 +0 +FDM_VBt0Stock1 1 +0 +FDP_VBt0Stock1 1 +0 +FDB_VBt0Stock1 1 +0 +FDC_VBt0Stock1 1 +0 +FDO_VBt0Stock1 1 +0 +FDF_VBt0Stock1 1 +0 +SHB_VBt0Stock1 1 +0 +SHD_VBt0Stock1 1 +0 +SHC_VBt0Stock1 1 +0 +SHP_VBt0Stock1 1 +0 +SHR_VBt0Stock1 1 +0 +SSK_VBt0Stock1 1 +0 +SB_VBt0Stock1 1 +0 +SP_VBt0Stock1 1 +0 +PIN_VBt0Stock1 1 +0 +REP_VBt0Stock1 1 +0 +WHB_VBt0Stock1 1 +0 +WHS_VBt0Stock1 1 +0 +WHT_VBt0Stock1 1 +0 +WDG_VBt0Stock1 1 +0 +CEP_VBt0Stock1 1 +0 +BFS_VBt0Stock1 1 +0 +BFF_VBt0Stock1 1 +0 +BFD_VBt0Stock1 1 +0 +BG_VBt0Stock1 1 +0 +BMD_VBt0Stock1 1 +0 +BML_VBt0Stock1 1 +0 +BMS_VBt0Stock1 1 +0 +PWN_VBt0Stock1 1 +0 +ZL_VBt0Stock1 1 +0 +BD_VBt0Stock1 1 +0 +MA_VBt0Stock1 1 +0 +MB_VBt0Stock1 1 +0 +SG_VBt0Stock1 1 +0 +BC_VBt0Stock1 1 +0 +ZG_VBt0Stock1 1 +0 +PL_VBt0Stock1 1 +0 +DF_VBt0Stock1 1 +0 +PS_VBt0Stock1 1 +0 +ZM_VBt0Stock1 1 +0 +ZS_VBt0Stock1 1 +0 +DL_VBt0Stock1 1 +0 +DR_VBt0Stock1 1 +0 +DC_VBt0Stock1 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# _Fecundity at age by stock +FPL_FecundStock1 1 +0 +FPO_FecundStock1 1 +0 +FPS_FecundStock1 1 +0 +FVD_FecundStock1 1 +0 +FVV_FecundStock1 1 +0 +FVS_FecundStock1 1 +0 +FVB_FecundStock1 1 +0 +FVT_FecundStock1 1 +0 +FVO_FecundStock1 1 +0 +FMM_FecundStock1 1 +0 +FMN_FecundStock1 1 +0 +FBP_FecundStock1 1 +0 +FDD_FecundStock1 1 +0 +FDE_FecundStock1 1 +0 +FDS_FecundStock1 1 +0 +FDM_FecundStock1 1 +0 +FDP_FecundStock1 1 +0 +FDB_FecundStock1 1 +0 +FDC_FecundStock1 1 +0 +FDO_FecundStock1 1 +0 +FDF_FecundStock1 1 +0 +SHB_FecundStock1 1 +0 +SHD_FecundStock1 1 +0 +SHC_FecundStock1 1 +0 +SHP_FecundStock1 1 +0 +SHR_FecundStock1 1 +0 +SSK_FecundStock1 1 +0 +SB_FecundStock1 1 +0 +SP_FecundStock1 1 +0 +PIN_FecundStock1 1 +0 +REP_FecundStock1 1 +0 +WHB_FecundStock1 1 +0 +WHS_FecundStock1 1 +0 +WHT_FecundStock1 1 +0 +WDG_FecundStock1 1 +0 +CEP_FecundStock1 1 +0 +BFS_FecundStock1 1 +0 +BFF_FecundStock1 1 +0 +BFD_FecundStock1 1 +0 +BG_FecundStock1 1 +0 +BMD_FecundStock1 1 +0 +BML_FecundStock1 1 +0 +BMS_FecundStock1 1 +0 +PWN_FecundStock1 1 +0 +ZL_FecundStock1 1 +0 +BD_FecundStock1 1 +0 +MA_FecundStock1 1 +0 +MB_FecundStock1 1 +0 +SG_FecundStock1 1 +0 +BC_FecundStock1 1 +0 +ZG_FecundStock1 1 +0 +PL_FecundStock1 1 +0 +DF_FecundStock1 1 +0 +PS_FecundStock1 1 +0 +ZM_FecundStock1 1 +0 +ZS_FecundStock1 1 +0 +DL_FecundStock1 1 +0 +DR_FecundStock1 1 +0 +DC_FecundStock1 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# M for SS control file +FPL_SSMortStock1 1 +0 +FPO_SSMortStock1 1 +0 +FPS_SSMortStock1 1 +0 +FVD_SSMortStock1 1 +0 +FVV_SSMortStock1 1 +0 +FVS_SSMortStock1 1 +0 +FVB_SSMortStock1 1 +0 +FVT_SSMortStock1 1 +0 +FVO_SSMortStock1 1 +0 +FMM_SSMortStock1 1 +0 +FMN_SSMortStock1 1 +0 +FBP_SSMortStock1 1 +0 +FDD_SSMortStock1 1 +0 +FDE_SSMortStock1 1 +0 +FDS_SSMortStock1 1 +0 +FDM_SSMortStock1 1 +0 +FDP_SSMortStock1 1 +0 +FDB_SSMortStock1 1 +0 +FDC_SSMortStock1 1 +0 +FDO_SSMortStock1 1 +0 +FDF_SSMortStock1 1 +0 +SHB_SSMortStock1 1 +0 +SHD_SSMortStock1 1 +0 +SHC_SSMortStock1 1 +0 +SHP_SSMortStock1 1 +0 +SHR_SSMortStock1 1 +0 +SSK_SSMortStock1 1 +0 +SB_SSMortStock1 1 +0 +SP_SSMortStock1 1 +0 +PIN_SSMortStock1 1 +0 +REP_SSMortStock1 1 +0 +WHB_SSMortStock1 1 +0 +WHS_SSMortStock1 1 +0 +WHT_SSMortStock1 1 +0 +WDG_SSMortStock1 1 +0 +CEP_SSMortStock1 1 +0 +BFS_SSMortStock1 1 +0 +BFF_SSMortStock1 1 +0 +BFD_SSMortStock1 1 +0 +BG_SSMortStock1 1 +0 +BMD_SSMortStock1 1 +0 +BML_SSMortStock1 1 +0 +BMS_SSMortStock1 1 +0 +PWN_SSMortStock1 1 +0 +ZL_SSMortStock1 1 +0 +BD_SSMortStock1 1 +0 +MA_SSMortStock1 1 +0 +MB_SSMortStock1 1 +0 +SG_SSMortStock1 1 +0 +BC_SSMortStock1 1 +0 +ZG_SSMortStock1 1 +0 +PL_SSMortStock1 1 +0 +DF_SSMortStock1 1 +0 +PS_SSMortStock1 1 +0 +ZM_SSMortStock1 1 +0 +ZS_SSMortStock1 1 +0 +DL_SSMortStock1 1 +0 +DR_SSMortStock1 1 +0 +DC_SSMortStock1 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Summary statistics for generating data for entry into SS +# Start with discards CV per fleet +discard_cv_FPL 1 +0 +discard_cv_FPO 1 +0 +discard_cv_FPS 1 +0 +discard_cv_FVD 1 +0 +discard_cv_FVV 1 +0 +discard_cv_FVS 1 +0 +discard_cv_FVB 1 +0 +discard_cv_FVT 1 +0 +discard_cv_FVO 1 +0 +discard_cv_FMM 1 +0 +discard_cv_FMN 1 +0 +discard_cv_FBP 1 +0 +discard_cv_FDD 1 +0 +discard_cv_FDE 1 +0 +discard_cv_FDS 1 +0 +discard_cv_FDM 1 +0 +discard_cv_FDP 1 +0 +discard_cv_FDB 1 +0 +discard_cv_FDC 1 +0 +discard_cv_FDO 1 +0 +discard_cv_FDF 1 +0 +discard_cv_SHB 1 +0 +discard_cv_SHD 1 +0 +discard_cv_SHC 1 +0 +discard_cv_SHP 1 +0 +discard_cv_SHR 1 +0 +discard_cv_SSK 1 +0 +discard_cv_SB 1 +0 +discard_cv_SP 1 +0 +discard_cv_PIN 1 +0 +discard_cv_REP 1 +0 +discard_cv_WHB 1 +0 +discard_cv_WHS 1 +0 +discard_cv_WHT 1 +0 +discard_cv_WDG 1 +0 +discard_cv_CEP 1 +0 +discard_cv_BFS 1 +0 +discard_cv_BFF 1 +0 +discard_cv_BFD 1 +0 +discard_cv_BG 1 +0 +discard_cv_BMD 1 +0 +discard_cv_BML 1 +0 +discard_cv_BMS 1 +0 +discard_cv_PWN 1 +0 +discard_cv_ZL 1 +0 +discard_cv_BD 1 +0 +discard_cv_MA 1 +0 +discard_cv_MB 1 +0 +discard_cv_SG 1 +0 +discard_cv_BC 1 +0 +discard_cv_ZG 1 +0 +discard_cv_PL 1 +0 +discard_cv_DF 1 +0 +discard_cv_PS 1 +0 +discard_cv_ZM 1 +0 +discard_cv_ZS 1 +0 +discard_cv_DL 1 +0 +discard_cv_DR 1 +0 +discard_cv_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# Catch CV per fleet +catch_cv_FPL 1 +0 +catch_cv_FPO 1 +0 +catch_cv_FPS 1 +0 +catch_cv_FVD 1 +0 +catch_cv_FVV 1 +0 +catch_cv_FVS 1 +0 +catch_cv_FVB 1 +0 +catch_cv_FVT 1 +0 +catch_cv_FVO 1 +0 +catch_cv_FMM 1 +0 +catch_cv_FMN 1 +0 +catch_cv_FBP 1 +0 +catch_cv_FDD 1 +0 +catch_cv_FDE 1 +0 +catch_cv_FDS 1 +0 +catch_cv_FDM 1 +0 +catch_cv_FDP 1 +0 +catch_cv_FDB 1 +0 +catch_cv_FDC 1 +0 +catch_cv_FDO 1 +0 +catch_cv_FDF 1 +0 +catch_cv_SHB 1 +0 +catch_cv_SHD 1 +0 +catch_cv_SHC 1 +0 +catch_cv_SHP 1 +0 +catch_cv_SHR 1 +0 +catch_cv_SSK 1 +0 +catch_cv_SB 1 +0 +catch_cv_SP 1 +0 +catch_cv_PIN 1 +0 +catch_cv_REP 1 +0 +catch_cv_WHB 1 +0 +catch_cv_WHS 1 +0 +catch_cv_WHT 1 +0 +catch_cv_WDG 1 +0 +catch_cv_CEP 1 +0 +catch_cv_BFS 1 +0 +catch_cv_BFF 1 +0 +catch_cv_BFD 1 +0 +catch_cv_BG 1 +0 +catch_cv_BMD 1 +0 +catch_cv_BML 1 +0 +catch_cv_BMS 1 +0 +catch_cv_PWN 1 +0 +catch_cv_ZL 1 +0 +catch_cv_BD 1 +0 +catch_cv_MA 1 +0 +catch_cv_MB 1 +0 +catch_cv_SG 1 +0 +catch_cv_BC 1 +0 +catch_cv_ZG 1 +0 +catch_cv_PL 1 +0 +catch_cv_DF 1 +0 +catch_cv_PS 1 +0 +catch_cv_ZM 1 +0 +catch_cv_ZS 1 +0 +catch_cv_DL 1 +0 +catch_cv_DR 1 +0 +catch_cv_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +tier5JensenConst 1.65 # As of Jensen 1996 in Zhou et al 2011 SAFE multispecies data poor paper +tier5limscalar 1.5 # As of Zhou et al 2011 SAFE multispecies data poor paper +tier5omega 0.91 # As of Zhou et al 2011 SAFE multispecies data poor paper +tier5DCACscalar 0.4 # As of MacCall 2009 DCAC +tier5DCACconst 0.75 # As of MacCall 2009 DCAC + +## Tier 6 rules +tier6_to_tier4 0 +delTAE 0.2 + +## Tier 7 rules - all from Dowling paper +tier7areachange 0.4 +tier7relarea 0.4 +tier7cpuechange 0.5 +tier7maxcompchange 0.3 +tier7maxannchange 0.1 +tier7period 3 + +# Effort CV per fleet +effort_cv_FPL 1 +0 +effort_cv_FPO 1 +0 +effort_cv_FPS 1 +0 +effort_cv_FVD 1 +0 +effort_cv_FVV 1 +0 +effort_cv_FVS 1 +0 +effort_cv_FVB 1 +0 +effort_cv_FVT 1 +0 +effort_cv_FVO 1 +0 +effort_cv_FMM 1 +0 +effort_cv_FMN 1 +0 +effort_cv_FBP 1 +0 +effort_cv_FDD 1 +0 +effort_cv_FDE 1 +0 +effort_cv_FDS 1 +0 +effort_cv_FDM 1 +0 +effort_cv_FDP 1 +0 +effort_cv_FDB 1 +0 +effort_cv_FDC 1 +0 +effort_cv_FDO 1 +0 +effort_cv_FDF 1 +0 +effort_cv_SHB 1 +0 +effort_cv_SHD 1 +0 +effort_cv_SHC 1 +0 +effort_cv_SHP 1 +0 +effort_cv_SHR 1 +0 +effort_cv_SSK 1 +0 +effort_cv_SB 1 +0 +effort_cv_SP 1 +0 +effort_cv_PIN 1 +0 +effort_cv_REP 1 +0 +effort_cv_WHB 1 +0 +effort_cv_WHS 1 +0 +effort_cv_WHT 1 +0 +effort_cv_WDG 1 +0 +effort_cv_CEP 1 +0 +effort_cv_BFS 1 +0 +effort_cv_BFF 1 +0 +effort_cv_BFD 1 +0 +effort_cv_BG 1 +0 +effort_cv_BMD 1 +0 +effort_cv_BML 1 +0 +effort_cv_BMS 1 +0 +effort_cv_PWN 1 +0 +effort_cv_ZL 1 +0 +effort_cv_BD 1 +0 +effort_cv_MA 1 +0 +effort_cv_MB 1 +0 +effort_cv_SG 1 +0 +effort_cv_BC 1 +0 +effort_cv_ZG 1 +0 +effort_cv_PL 1 +0 +effort_cv_DF 1 +0 +effort_cv_PS 1 +0 +effort_cv_ZM 1 +0 +effort_cv_ZS 1 +0 +effort_cv_DL 1 +0 +effort_cv_DR 1 +0 +effort_cv_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# CV of CPUE per fleet +cpue_cv_FPL 1 +0 +cpue_cv_FPO 1 +0 +cpue_cv_FPS 1 +0 +cpue_cv_FVD 1 +0 +cpue_cv_FVV 1 +0 +cpue_cv_FVS 1 +0 +cpue_cv_FVB 1 +0 +cpue_cv_FVT 1 +0 +cpue_cv_FVO 1 +0 +cpue_cv_FMM 1 +0 +cpue_cv_FMN 1 +0 +cpue_cv_FBP 1 +0 +cpue_cv_FDD 1 +0 +cpue_cv_FDE 1 +0 +cpue_cv_FDS 1 +0 +cpue_cv_FDM 1 +0 +cpue_cv_FDP 1 +0 +cpue_cv_FDB 1 +0 +cpue_cv_FDC 1 +0 +cpue_cv_FDO 1 +0 +cpue_cv_FDF 1 +0 +cpue_cv_SHB 1 +0 +cpue_cv_SHD 1 +0 +cpue_cv_SHC 1 +0 +cpue_cv_SHP 1 +0 +cpue_cv_SHR 1 +0 +cpue_cv_SSK 1 +0 +cpue_cv_SB 1 +0 +cpue_cv_SP 1 +0 +cpue_cv_PIN 1 +0 +cpue_cv_REP 1 +0 +cpue_cv_WHB 1 +0 +cpue_cv_WHS 1 +0 +cpue_cv_WHT 1 +0 +cpue_cv_WDG 1 +0 +cpue_cv_CEP 1 +0 +cpue_cv_BFS 1 +0 +cpue_cv_BFF 1 +0 +cpue_cv_BFD 1 +0 +cpue_cv_BG 1 +0 +cpue_cv_BMD 1 +0 +cpue_cv_BML 1 +0 +cpue_cv_BMS 1 +0 +cpue_cv_PWN 1 +0 +cpue_cv_ZL 1 +0 +cpue_cv_BD 1 +0 +cpue_cv_MA 1 +0 +cpue_cv_MB 1 +0 +cpue_cv_SG 1 +0 +cpue_cv_BC 1 +0 +cpue_cv_ZG 1 +0 +cpue_cv_PL 1 +0 +cpue_cv_DF 1 +0 +cpue_cv_PS 1 +0 +cpue_cv_ZM 1 +0 +cpue_cv_ZS 1 +0 +cpue_cv_DL 1 +0 +cpue_cv_DR 1 +0 +cpue_cv_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# CPUE variability of catchability per fleet +cpue_var_FPL 1 +0 +cpue_var_FPO 1 +0 +cpue_var_FPS 1 +0 +cpue_var_FVD 1 +0 +cpue_var_FVV 1 +0 +cpue_var_FVS 1 +0 +cpue_var_FVB 1 +0 +cpue_var_FVT 1 +0 +cpue_var_FVO 1 +0 +cpue_var_FMM 1 +0 +cpue_var_FMN 1 +0 +cpue_var_FBP 1 +0 +cpue_var_FDD 1 +0 +cpue_var_FDE 1 +0 +cpue_var_FDS 1 +0 +cpue_var_FDM 1 +0 +cpue_var_FDP 1 +0 +cpue_var_FDB 1 +0 +cpue_var_FDC 1 +0 +cpue_var_FDO 1 +0 +cpue_var_FDF 1 +0 +cpue_var_SHB 1 +0 +cpue_var_SHD 1 +0 +cpue_var_SHC 1 +0 +cpue_var_SHP 1 +0 +cpue_var_SHR 1 +0 +cpue_var_SSK 1 +0 +cpue_var_SB 1 +0 +cpue_var_SP 1 +0 +cpue_var_PIN 1 +0 +cpue_var_REP 1 +0 +cpue_var_WHB 1 +0 +cpue_var_WHS 1 +0 +cpue_var_WHT 1 +0 +cpue_var_WDG 1 +0 +cpue_var_CEP 1 +0 +cpue_var_BFS 1 +0 +cpue_var_BFF 1 +0 +cpue_var_BFD 1 +0 +cpue_var_BG 1 +0 +cpue_var_BMD 1 +0 +cpue_var_BML 1 +0 +cpue_var_BMS 1 +0 +cpue_var_PWN 1 +0 +cpue_var_ZL 1 +0 +cpue_var_BD 1 +0 +cpue_var_MA 1 +0 +cpue_var_MB 1 +0 +cpue_var_SG 1 +0 +cpue_var_BC 1 +0 +cpue_var_ZG 1 +0 +cpue_var_PL 1 +0 +cpue_var_DF 1 +0 +cpue_var_PS 1 +0 +cpue_var_ZM 1 +0 +cpue_var_ZS 1 +0 +cpue_var_DL 1 +0 +cpue_var_DR 1 +0 +cpue_var_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +# CPUE correlation catchability per fleet +cpue_corr_FPL 1 +0 +cpue_corr_FPO 1 +0 +cpue_corr_FPS 1 +0 +cpue_corr_FVD 1 +0 +cpue_corr_FVV 1 +0 +cpue_corr_FVS 1 +0 +cpue_corr_FVB 1 +0 +cpue_corr_FVT 1 +0 +cpue_corr_FVO 1 +0 +cpue_corr_FMM 1 +0 +cpue_corr_FMN 1 +0 +cpue_corr_FBP 1 +0 +cpue_corr_FDD 1 +0 +cpue_corr_FDE 1 +0 +cpue_corr_FDS 1 +0 +cpue_corr_FDM 1 +0 +cpue_corr_FDP 1 +0 +cpue_corr_FDB 1 +0 +cpue_corr_FDC 1 +0 +cpue_corr_FDO 1 +0 +cpue_corr_FDF 1 +0 +cpue_corr_SHB 1 +0 +cpue_corr_SHD 1 +0 +cpue_corr_SHC 1 +0 +cpue_corr_SHP 1 +0 +cpue_corr_SHR 1 +0 +cpue_corr_SSK 1 +0 +cpue_corr_SB 1 +0 +cpue_corr_SP 1 +0 +cpue_corr_PIN 1 +0 +cpue_corr_REP 1 +0 +cpue_corr_WHB 1 +0 +cpue_corr_WHS 1 +0 +cpue_corr_WHT 1 +0 +cpue_corr_WDG 1 +0 +cpue_corr_CEP 1 +0 +cpue_corr_BFS 1 +0 +cpue_corr_BFF 1 +0 +cpue_corr_BFD 1 +0 +cpue_corr_BG 1 +0 +cpue_corr_BMD 1 +0 +cpue_corr_BML 1 +0 +cpue_corr_BMS 1 +0 +cpue_corr_PWN 1 +0 +cpue_corr_ZL 1 +0 +cpue_corr_BD 1 +0 +cpue_corr_MA 1 +0 +cpue_corr_MB 1 +0 +cpue_corr_SG 1 +0 +cpue_corr_BC 1 +0 +cpue_corr_ZG 1 +0 +cpue_corr_PL 1 +0 +cpue_corr_DF 1 +0 +cpue_corr_PS 1 +0 +cpue_corr_ZM 1 +0 +cpue_corr_ZS 1 +0 +cpue_corr_DL 1 +0 +cpue_corr_DR 1 +0 +cpue_corr_DC 1 +0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +nRBCaverage 1 + +NumFisheries_FPL 0 +NumFisheries_FPO 0 +NumFisheries_FPS 0 +NumFisheries_FVD 0 +NumFisheries_FVV 0 +NumFisheries_FVS 0 +NumFisheries_FVB 0 +NumFisheries_FVT 0 +NumFisheries_FVO 0 +NumFisheries_FMM 0 +NumFisheries_FMN 0 +NumFisheries_FBP 1 +NumFisheries_FDD 0 +NumFisheries_FDE 0 +NumFisheries_FDS 0 +NumFisheries_FDM 0 +NumFisheries_FDP 0 +NumFisheries_FDB 0 +NumFisheries_FDC 1 +NumFisheries_FDO 0 +NumFisheries_FDF 1 +NumFisheries_SHB 0 +NumFisheries_SHD 0 +NumFisheries_SHC 0 +NumFisheries_SHP 0 +NumFisheries_SHR 0 +NumFisheries_SSK 0 +NumFisheries_SB 1 +NumFisheries_SP 0 +NumFisheries_PIN 1 +NumFisheries_REP 0 +NumFisheries_WHB 1 +NumFisheries_WHS 0 +NumFisheries_WHT 1 +NumFisheries_WDG 0 +NumFisheries_CEP 1 +NumFisheries_BFS 0 +NumFisheries_BFF 1 +NumFisheries_BFD 0 +NumFisheries_BG 1 +NumFisheries_BMD 0 +NumFisheries_BML 1 +NumFisheries_BMS 0 +NumFisheries_PWN 1 +NumFisheries_ZL 1 +NumFisheries_BD 1 +NumFisheries_MA 1 +NumFisheries_MB 1 +NumFisheries_SG 1 +NumFisheries_BC 1 +NumFisheries_ZG 1 +NumFisheries_PL 0 +NumFisheries_DF 0 +NumFisheries_PS 0 +NumFisheries_ZM 1 +NumFisheries_ZS 1 +NumFisheries_DL 0 +NumFisheries_DR 0 +NumFisheries_DC 0 + + +thresh_mat_FPL 0 +thresh_mat_FPO 0 +thresh_mat_FPS 0 +thresh_mat_FVD 0 +thresh_mat_FVV 0 +thresh_mat_FVS 0 +thresh_mat_FVB 0 +thresh_mat_FVT 0 +thresh_mat_FVO 0 +thresh_mat_FMM 0 +thresh_mat_FMN 0 +thresh_mat_FBP 0 +thresh_mat_FDD 0 +thresh_mat_FDE 0 +thresh_mat_FDS 0 +thresh_mat_FDM 0 +thresh_mat_FDP 0 +thresh_mat_FDB 0 +thresh_mat_FDC 0 +thresh_mat_FDO 0 +thresh_mat_FDF 0 +thresh_mat_SHB 0 +thresh_mat_SHD 0 +thresh_mat_SHC 0 +thresh_mat_SHP 0 +thresh_mat_SHR 0 +thresh_mat_SSK 0 +thresh_mat_SB 0 +thresh_mat_SP 0 +thresh_mat_PIN 0 +thresh_mat_REP 0 +thresh_mat_WHB 0 +thresh_mat_WHS 0 +thresh_mat_WHT 0 +thresh_mat_WDG 0 +thresh_mat_CEP 0 +thresh_mat_BFS 0 +thresh_mat_BFF 0 +thresh_mat_BFD 0 +thresh_mat_BG 0 +thresh_mat_BMD 0 +thresh_mat_BML 0 +thresh_mat_BMS 0 +thresh_mat_PWN 0 +thresh_mat_ZL 0 +thresh_mat_BD 0 +thresh_mat_MA 0 +thresh_mat_MB 0 +thresh_mat_SG 0 +thresh_mat_BC 0 +thresh_mat_ZG 0 +thresh_mat_PL 0 +thresh_mat_DF 0 +thresh_mat_PS 0 +thresh_mat_ZM 0 +thresh_mat_ZS 0 +thresh_mat_DL 0 +thresh_mat_DR 0 +thresh_mat_DC 0 + + +femsexratio_FPL 0 +femsexratio_FPO 0 +femsexratio_FPS 0 +femsexratio_FVD 0 +femsexratio_FVV 0 +femsexratio_FVS 0 +femsexratio_FVB 0 +femsexratio_FVT 0 +femsexratio_FVO 0 +femsexratio_FMM 0 +femsexratio_FMN 0 +femsexratio_FBP 1 +femsexratio_FDD 0 +femsexratio_FDE 0 +femsexratio_FDS 0 +femsexratio_FDM 0 +femsexratio_FDP 0 +femsexratio_FDB 0 +femsexratio_FDC 1 +femsexratio_FDO 0 +femsexratio_FDF 1 +femsexratio_SHB 0 +femsexratio_SHD 0 +femsexratio_SHC 0 +femsexratio_SHP 0 +femsexratio_SHR 0 +femsexratio_SSK 0 +femsexratio_SB 1 +femsexratio_SP 0 +femsexratio_PIN 1 +femsexratio_REP 0 +femsexratio_WHB 1 +femsexratio_WHS 0 +femsexratio_WHT 1 +femsexratio_WDG 0 +femsexratio_CEP 1 +femsexratio_BFS 0 +femsexratio_BFF 1 +femsexratio_BFD 0 +femsexratio_BG 1 +femsexratio_BMD 0 +femsexratio_BML 1 +femsexratio_BMS 0 +femsexratio_PWN 1 +femsexratio_ZL 1 +femsexratio_BD 1 +femsexratio_MA 1 +femsexratio_MB 1 +femsexratio_SG 1 +femsexratio_BC 1 +femsexratio_ZG 1 +femsexratio_PL 0 +femsexratio_DF 0 +femsexratio_PS 0 +femsexratio_ZM 1 +femsexratio_ZS 1 +femsexratio_DL 0 +femsexratio_DR 0 +femsexratio_DC 0 + + +MultispAssessType_FPL 0 +MultispAssessType_FPO 0 +MultispAssessType_FPS 0 +MultispAssessType_FVD 0 +MultispAssessType_FVV 0 +MultispAssessType_FVS 0 +MultispAssessType_FVB 0 +MultispAssessType_FVT 0 +MultispAssessType_FVO 0 +MultispAssessType_FMM 0 +MultispAssessType_FMN 0 +MultispAssessType_FBP 1 +MultispAssessType_FDD 0 +MultispAssessType_FDE 0 +MultispAssessType_FDS 0 +MultispAssessType_FDM 0 +MultispAssessType_FDP 0 +MultispAssessType_FDB 0 +MultispAssessType_FDC 1 +MultispAssessType_FDO 0 +MultispAssessType_FDF 1 +MultispAssessType_SHB 0 +MultispAssessType_SHD 0 +MultispAssessType_SHC 0 +MultispAssessType_SHP 0 +MultispAssessType_SHR 0 +MultispAssessType_SSK 0 +MultispAssessType_SB 1 +MultispAssessType_SP 0 +MultispAssessType_PIN 1 +MultispAssessType_REP 0 +MultispAssessType_WHB 1 +MultispAssessType_WHS 0 +MultispAssessType_WHT 1 +MultispAssessType_WDG 0 +MultispAssessType_CEP 1 +MultispAssessType_BFS 0 +MultispAssessType_BFF 1 +MultispAssessType_BFD 0 +MultispAssessType_BG 1 +MultispAssessType_BMD 0 +MultispAssessType_BML 1 +MultispAssessType_BMS 0 +MultispAssessType_PWN 1 +MultispAssessType_ZL 1 +MultispAssessType_BD 1 +MultispAssessType_MA 1 +MultispAssessType_MB 1 +MultispAssessType_SG 1 +MultispAssessType_BC 1 +MultispAssessType_ZG 1 +MultispAssessType_PL 0 +MultispAssessType_DF 0 +MultispAssessType_PS 0 +MultispAssessType_ZM 1 +MultispAssessType_ZS 1 +MultispAssessType_DL 0 +MultispAssessType_DR 0 +MultispAssessType_DC 0 + + + +mgt_indicator_FPL 0 +mgt_indicator_FPO 0 +mgt_indicator_FPS 0 +mgt_indicator_FVD 0 +mgt_indicator_FVV 0 +mgt_indicator_FVS 0 +mgt_indicator_FVB 0 +mgt_indicator_FVT 0 +mgt_indicator_FVO 0 +mgt_indicator_FMM 0 +mgt_indicator_FMN 0 +mgt_indicator_FBP 0 +mgt_indicator_FDD 0 +mgt_indicator_FDE 0 +mgt_indicator_FDS 0 +mgt_indicator_FDM 0 +mgt_indicator_FDP 0 +mgt_indicator_FDB 0 +mgt_indicator_FDC 0 +mgt_indicator_FDO 0 +mgt_indicator_FDF 0 +mgt_indicator_SHB 0 +mgt_indicator_SHD 0 +mgt_indicator_SHC 0 +mgt_indicator_SHP 0 +mgt_indicator_SHR 0 +mgt_indicator_SSK 0 +mgt_indicator_SB 0 +mgt_indicator_SP 0 +mgt_indicator_PIN 0 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