diff --git a/apps/TrappingCorrectionAm241.cxx b/apps/TrappingCorrectionAm241.cxx index a873307e..89e8c93f 100644 --- a/apps/TrappingCorrectionAm241.cxx +++ b/apps/TrappingCorrectionAm241.cxx @@ -339,7 +339,6 @@ bool TrappingCorrectionAm241::Analyze() for (unsigned int f = 0; fSetFileNameStripMap(m_StripMapFile); Loader->SetFileName(File); @@ -371,7 +369,6 @@ bool TrappingCorrectionAm241::Analyze() S->SetModule(EnergyCalibrator, MNumber); ++MNumber; - cout<<"Creating Event filter"<SetMaximumTotalEnergy(m_MaxEnergy*2); // Multiply by 2 because this is the event-level energy, i.e. sum over both sides S->SetModule(EventFilter, MNumber); ++MNumber; - - cout<<"Creating strip pairing"<SetModule(Pairing, MNumber); - cout<<"Initializing Loader"<Initialize() == false) return false; - cout<<"Initializing TAC calibrator"<Initialize() == false) return false; - cout<<"Initializing Energy calibrator"<Initialize() == false) return false; - cout<<"Initializing Event filter"<Initialize() == false) return false; - cout<<"Initializing Pairing"<Initialize() == false) return false; bool IsFinished = false; MReadOutAssembly* Event = new MReadOutAssembly(); // Pass Events through each module. Once calibrated, add the Event to the histograms - cout<<"Analyzing..."<Clear(); @@ -469,7 +459,7 @@ bool TrappingCorrectionAm241::Analyze() MStripHit* HVSH = GetDominantStrip(HVStrips, HVEnergyFraction); MStripHit* LVSH = GetDominantStrip(LVStrips, LVEnergyFraction); - if ((LVSH->HasCalibratedTiming()==true) && (HVSH->HasCalibratedTiming()==true)) { + if ((LVSH->HasFastTiming()==true) && (HVSH->HasFastTiming()==true)&& (LVSH != nullptr) && (HVSH != nullptr)) { double CTD = LVSH->GetTiming() - HVSH->GetTiming(); diff --git a/apps/TrappingCorrectionCs137.cxx b/apps/TrappingCorrectionCs137.cxx new file mode 100644 index 00000000..6a2c7934 --- /dev/null +++ b/apps/TrappingCorrectionCs137.cxx @@ -0,0 +1,811 @@ +/* + * TrappingCorrectionCs137.cxx + * + * + * Copyright (C) by Sophie Haight. + * All rights reserved. + * + * + * This code implementation is the intellectual property of + * Sophie Haight. + * + * By copying, distributing or modifying the Program (or any work + * based on the Program) you indicate your acceptance of this statement, + * and all its terms. + * + */ + +// Standard +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +using namespace std; + +// ROOT +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +// MEGAlib +#include "MGlobal.h" +#include "MFile.h" +#include "MReadOutElementDoubleStrip.h" +#include "MFileReadOuts.h" +#include "MReadOutAssembly.h" +#include "MStripHit.h" +#include "MReadOutSequence.h" +#include "MSupervisor.h" +#include "MModuleLoaderMeasurementsHDF.h" +#include "MModuleEnergyCalibration.h" +#include "MModuleEventFilter.h" +#include "MModuleStripPairingMultiRoundChiSquare.h" +#include "MModuleStripPairingChiSquare.h" +#include "MModuleTACCalibration.h" +#include "MAssembly.h" +#include "MModuleDepthCalibration.h" + + +double g_MinCTD = -250; +// TO DO: Explore widening the CTD range +double g_MaxCTD = 250; +int g_MinCounts = 1000; +int g_HVStrips = 64; +int g_LVStrips = 64; + +double g_CsPhotopeak = 661.7; + +const int NCTDBins = 30; +// We need NCTDBins + 1 edges to define the boundaries of NCTDBins +double g_CTDBinEdges[NCTDBins + 1]; + +// Run this initialization function ONCE at the start of your program (e.g., in main or class constructor) +void InitializeCTDBins() { + double center = (g_MaxCTD + g_MinCTD) / 2.0; + double halfWidth = (g_MaxCTD - g_MinCTD) / 2.0; + + for (int i = 0; i <= NCTDBins; ++i) { + // Map linear fraction from -1.0 (at i=0) to +1.0 (at i=NCTDBins) + double fraction = -1.0 + 2.0 * double(i) / double(NCTDBins); + + // Sinusoidal transformation: creates a higher density of points near the center + // If you prefer an even steeper density difference, you can use: pow(fraction, 3) + double nonLinearFraction = sin(fraction * M_PI / 2.0); + + // Calculate the actual CTD boundary coordinate + g_CTDBinEdges[i] = center + halfWidth * nonLinearFraction; + } +} + +int GetCTDBin(double CTD) { + // Hard bounds check + if (CTD < g_MinCTD || CTD >= g_MaxCTD) return -1; + + // Perform binary search to find the first edge that is strictly greater than our CTD value + auto it = std::upper_bound(g_CTDBinEdges, g_CTDBinEdges + NCTDBins + 1, CTD); + + // The bin index is simply the distance from the beginning boundary minus 1 + int bin = std::distance(g_CTDBinEdges, it) - 1; + + // Guard against edge cases at the absolute maximum limit + if (bin >= NCTDBins) bin = NCTDBins - 1; + if (bin < 0) bin = 0; + + return bin; +} + +//////////////////////////////////////////////////////////////////////////////// + + +//! A standalone program based on MEGAlib and ROOT +class TrappingCorrectionCs137 +{ +public: + //! Default constructor + TrappingCorrectionCs137(); + //! Default destructor + ~TrappingCorrectionCs137(); + + //! Parse the command line + bool ParseCommandLine(int argc, char** argv); + //! Analyze what ever needs to be analyzed... + bool Analyze(); + //! Interrupt the analysis + void Interrupt() { m_Interrupt = true; } + + //! Produce functions for fitting + + TF1* GeneratePhotopeakFunction(); + + private: + //! True, if the analysis needs to be interrupted + bool m_Interrupt; + //! The input file name + MString m_FileName; + MString m_EcalFile; + MString m_TACCalFile; + MString m_StripMapFile; + //! output file names + MString m_OutFile; + //! option to do a pixel-by-pixel calibration (instead of detector-by-detector) + bool m_PixelCorrect; + bool m_MultiRoundStripPairing; + bool m_ExcludeNN; + bool m_ContinueHDF5; + + double m_MinEnergy; + double m_MaxEnergy; + +}; + +//////////////////////////////////////////////////////////////////////////////// + + +//! Default constructor +TrappingCorrectionCs137::TrappingCorrectionCs137() : m_Interrupt(false) +{ + gStyle->SetPalette(1, 0); +} + + +//////////////////////////////////////////////////////////////////////////////// + + +//! Default destructor +TrappingCorrectionCs137::~TrappingCorrectionCs137() +{ + // Intentionally left blank +} + + +//////////////////////////////////////////////////////////////////////////////// + + +//! Parse the command line +bool TrappingCorrectionCs137::ParseCommandLine(int argc, char** argv) +{ + ostringstream Usage; + Usage<"< i+1) && (argv[i+1][0] != '-' || isalpha(argv[i+1][1]) == 0))){ + cout<<"Error: Option "<>> FullDetEndpoints; + + // Store the input files + vector FileNames; + FileNames.push_back(m_FileName); + cout << "file name stored" << endl; + + + MString InputFile = FileNames[0]; + cout << " input file stored as: " << InputFile << endl; + vector HDFNames; + + // Enable sum of weights squared for TH1 by default + TH1::SetDefaultSumw2(); + + // Detector-level maps organized by [CTDBin][DetID] + map> FullDetCTDHistograms; + map> FullDetHVEnergyHistograms; + map> FullDetLVEnergyHistograms; + + // Read in the input files and make a list of hdf5 files to calibrate + if ((InputFile.GetSubString(InputFile.Length() - 4)) == "hdf5") { + HDFNames.push_back(InputFile); + cout << "hdf names loaded correctly" << endl; + } else if ((InputFile.GetSubString(InputFile.Length() - 3)) == "txt") { + cout << "Reading input file " << InputFile << endl; + cout << "WARNING: When passing a list of files, ensure that you have chosen the correct HDF5 continuous reading mode. Use the --nocontinue option to suppress continuous file reading." << endl; + MFile F; + if (F.Open(InputFile) == false) { + cout << "Error: Failed to open input file." << endl; + return false; + } else { + MString Line; + while (F.ReadLine(Line)) { + MString Trimmed = Line.Trim(); + if ((Trimmed != "")) { + if (F.Exists(Trimmed) == true) { + HDFNames.push_back(Trimmed); + } else { + cout << "Error: Could not find file " << Trimmed << endl; + return false; + } + } + } + } + } else { + cout << "Error: Unrecognized file format: " << InputFile << endl; + return false; + } + + // Analyze all the data and fill in the histograms + for (unsigned int f = 0; f < HDFNames.size(); ++f) { + + MString File = HDFNames[f]; + cout << "Beginning analysis of file " << File << endl; + + // Create and initialize nuclearizer modules + MSupervisor* S = MSupervisor::GetSupervisor(); + + MModuleLoaderMeasurementsHDF* Loader; + MModuleTACCalibration* TACCalibrator; + MModuleEnergyCalibration* EnergyCalibrator; + MModuleEventFilter* EventFilter; + MModuleDepthCalibration* DepthCalibrator; + + unsigned int MNumber = 0; + cout << "Creating HDF5 loader" << endl; + Loader = new MModuleLoaderMeasurementsHDF(); + Loader->SetFileNameStripMap(m_StripMapFile); + Loader->SetFileName(File); + Loader->SetLoadContinuationFiles(m_ContinueHDF5); + S->SetModule(Loader, MNumber); + ++MNumber; + + cout << "Creating TAC calibrator" << endl; + TACCalibrator = new MModuleTACCalibration(); + TACCalibrator->SetTACCalFileName(m_TACCalFile); + S->SetModule(TACCalibrator, MNumber); + ++MNumber; + + cout << "Creating energy calibrator" << endl; + EnergyCalibrator = new MModuleEnergyCalibration(); + EnergyCalibrator->SetFileName(m_EcalFile); + EnergyCalibrator->SetSlowThresholdCutFixedValue(15.0); + S->SetModule(EnergyCalibrator, MNumber); + ++MNumber; + + cout << "Creating Event filter" << endl; + EventFilter = new MModuleEventFilter(); + EventFilter->SetMinimumLVStrips(1); + EventFilter->SetMaximumLVStrips(3); + EventFilter->SetMinimumHVStrips(1); + EventFilter->SetMaximumHVStrips(3); + EventFilter->SetMinimumHits(0); + EventFilter->SetMaximumHits(100); + EventFilter->SetMinimumTotalEnergy(m_MinEnergy); + EventFilter->SetMaximumTotalEnergy(m_MaxEnergy ); // Multiply by 2 because this is the event-level energy, i.e. sum over both sides + S->SetModule(EventFilter, MNumber); + ++MNumber; + + cout << "Creating strip pairing" << endl; + MModule* Pairing; + if (m_MultiRoundStripPairing == true) { + Pairing = new MModuleStripPairingMultiRoundChiSquare(); + } else { + Pairing = new MModuleStripPairingChiSquare(); + } + S->SetModule(Pairing, MNumber); + + // Create depth calibration module + //Only to import predefined functions, not for depth + DepthCalibrator = new MModuleDepthCalibration(); + + + + cout<<"Initializing Loader"<Initialize() == false) return false; + cout<<"Initializing TAC calibrator"<Initialize() == false) return false; + cout<<"Initializing Energy calibrator"<Initialize() == false) return false; + cout<<"Initializing Event filter"<Initialize() == false) return false; + cout<<"Initializing Pairing"<Initialize() == false) return false; + + bool IsFinished = false; + MReadOutAssembly* Event = new MReadOutAssembly(); + cout<<"Modules initialized, starting event loop"<Clear(); + if (Loader->IsReady()) { + + Loader->AnalyzeEvent(Event); + TACCalibrator->AnalyzeEvent(Event); + EnergyCalibrator->AnalyzeEvent(Event); + bool Unfiltered = EventFilter->AnalyzeEvent(Event); + + if (Unfiltered == true) { + + Pairing->AnalyzeEvent(Event); + + if ((Event->HasAnalysisProgress(MAssembly::c_StripPairing) == true) && (Unfiltered == true)) { + + for (unsigned int h = 0; h < Event->GetNHits(); ++h) { + double HVEnergy = 0.0; + double LVEnergy = 0.0; + vector HVStrips; + vector LVStrips; + + MHit* H = Event->GetHit(h); + int DetID = H->GetStripHit(0)->GetDetectorID(); + + for (unsigned int sh = 0; sh < H->GetNStripHits(); ++sh) { + MStripHit* SH = H->GetStripHit(sh); + + if ((m_ExcludeNN == false) || ((m_ExcludeNN == true) && (SH->IsNearestNeighbor() == false))) { + if (SH->IsLowVoltageStrip() == true) { + LVEnergy += SH->GetEnergy(); + LVStrips.push_back(SH); + } else { + HVEnergy += SH->GetEnergy(); + HVStrips.push_back(SH); + } + } + } + + if ((HVStrips.size() > 0) && (LVStrips.size() > 0)) { + + double HVEnergyFraction = 0; + double LVEnergyFraction = 0; + MStripHit* HVSH = DepthCalibrator->GetDominantStrip(HVStrips, HVEnergyFraction); + MStripHit* LVSH = DepthCalibrator->GetDominantStrip(LVStrips, LVEnergyFraction); + + if ((LVSH->HasFastTiming() == true) && (HVSH->HasFastTiming() == true) && (LVSH != nullptr) && (HVSH != nullptr)) { + + double CTD = LVSH->GetTiming() - HVSH->GetTiming(); + int CTDBin = GetCTDBin(CTD); + if (CTDBin < 0) continue; + + // TH1D* FullCTDHist = FullDetCTDHistograms[CTDBin][DetID]; + TH1D* FullHVHist = FullDetHVEnergyHistograms[CTDBin][DetID]; + TH1D* FullLVHist = FullDetLVEnergyHistograms[CTDBin][DetID]; + + if (FullHVHist == nullptr) { + char name[128]; sprintf(name, "HV_Detector%d_bin%d", DetID, CTDBin); + FullHVHist = new TH1D(name, name, (m_MaxEnergy - m_MinEnergy) * 2, m_MinEnergy, m_MaxEnergy); + FullDetHVEnergyHistograms[CTDBin][DetID] = FullHVHist; + } + if (FullLVHist == nullptr) { + char name[128]; sprintf(name, "LV_Detector%d_bin%d", DetID, CTDBin); + FullLVHist = new TH1D(name, name, (m_MaxEnergy - m_MinEnergy) * 2, m_MinEnergy, m_MaxEnergy); + FullDetLVEnergyHistograms[CTDBin][DetID] = FullLVHist; + } + + // FullCTDHist->Fill(CTD); + FullHVHist->Fill(HVEnergy); + FullLVHist->Fill(LVEnergy); + } + } + } + } + } + } + IsFinished = Loader->IsFinished(); + } + } + + // Store depth binned fit results in an output file + ofstream MasterFitFile; + MasterFitFile.open(m_OutFile + MString("_All_CTDBin_FitResults.txt")); + MasterFitFile << "======================================================================" << endl; + MasterFitFile << "MASTER PHOTOPEAK FIT LOG FOR ALL CTD BINS AND DETECTORS" << endl; + MasterFitFile << "======================================================================" << endl << endl; + + // Do function fitting and recording for full detector outputs + for (int c = 0; c < NCTDBins; ++c) { + + cout << "Processing CTD bin " << c << endl; + + for (auto const& [DetID, FullHVHist] : FullDetHVEnergyHistograms[c]) { + + TH1D* HVHist = FullDetHVEnergyHistograms[c][DetID]; + TH1D* LVHist = FullDetLVEnergyHistograms[c][DetID]; + + if (HVHist->Integral() > g_MinCounts) { + + TF1* PhotopeakFunctionHV = GeneratePhotopeakFunction(); + TFitResultPtr HVFit = HVHist->Fit(PhotopeakFunctionHV, "S", "", 645, 675); + + TF1* PhotopeakFunctionLV = GeneratePhotopeakFunction(); + TFitResultPtr LVFit = LVHist->Fit(PhotopeakFunctionLV, "S", "", 645, 675); + + if ((HVFit >= 0)) { + + // Clear or initialize the vector for this specific bin and detector + FullDetEndpoints[c][DetID].clear(); + + // Parameter(2) is Mu for your CTD function, Parameter(1) is Mu for the Photopeaks + // FullDetEndpoints[c][DetID].push_back(CTDFit->Parameter(2)); // Index 0: CTD Centroid + FullDetEndpoints[c][DetID].push_back(HVFit->Parameter(1)); // Index 1: HV Photopeak Mu + FullDetEndpoints[c][DetID].push_back(HVFit->ParError(1)); // Index 2: HV Photopeak Mu Error + FullDetEndpoints[c][DetID].push_back(LVFit->Parameter(1)); // Index 2: LV Photopeak Mu + FullDetEndpoints[c][DetID].push_back(LVFit->ParError(1)); // Index 2: HV Photopeak Mu Error + + + MasterFitFile << "------------------------------------------------------------" << endl; + MasterFitFile << " DETECTOR ID: " << DetID << " | CTD BIN INDEX: " << c << endl; + MasterFitFile << "------------------------------------------------------------" << endl; + + // Redirect cout to our master file stream + std::streambuf* coutbuf = cout.rdbuf(); + cout.rdbuf(MasterFitFile.rdbuf()); + + // Passing "V" forces ROOT to print out all parameters, errors, and Chi2 configurations + HVFit->Print("V"); + + // Restore normal terminal routing + cout.rdbuf(coutbuf); + + MasterFitFile << endl << endl; // Add spacing between different bin entries + + // ofstream LVFitFile(DetID + MString("_CTDbin_") + c + MString("_LVEnergyFitResult_.txt")); + // coutbuf = cout.rdbuf(); + // cout.rdbuf(LVFitFile.rdbuf()); + // if (LVFit >= 0) { + // LVFit->Print(); + // } + // cout.rdbuf(coutbuf); + // LVFitFile.close(); + + TFile HVHistFile(m_OutFile + MString("_Det") + DetID + MString("_CTDbin_") + c + MString("_HVEnergyHist_Illum.root"), "recreate"); + TCanvas* HVHistCanvas = new TCanvas(); + HVHistCanvas->cd(); + HVHist->Draw("Hist"); + PhotopeakFunctionHV->Draw("same"); + HVHistCanvas->Write(); + HVHistFile.Close(); + + TFile LVHistFile(m_OutFile + MString("_Det") + DetID + MString("_CTDbin_") + c + MString("_LVEnergyHist_Illum.root"), "recreate"); + TCanvas* LVHistCanvas = new TCanvas(); + LVHistCanvas->cd(); + LVHist->Draw("Hist"); + PhotopeakFunctionLV->Draw("same"); + LVHistCanvas->Write(); + LVHistFile.Close(); + + } else { + cout << "Fits failed for CTD bin " << c << " Detector " << DetID << endl; + } + } else { + cout << "Fewer than " << g_MinCounts << " counts in CTD bin " << c << " Detector " << DetID << endl; + } + } + } + + // Close output parameter file + MasterFitFile.close(); + cout << "Master fit results log saved successfully." << endl; + + // Setup parameter file + ofstream OutputCalFile; + OutputCalFile.open(m_OutFile + MString("_parameters.txt")); + + // Updated header matching your request + OutputCalFile << "Det_ID" << '\t' + << "CTD_Bin" << '\t' + << "CTD_BinMidpoint_ns" << '\t' + << "HV_Centroid_keV" << '\t' + <<"HV_Centroid_error_keV" << '\t' + << "LV_Centroid_keV" << '\t' + <<"LV_Centroid_error_keV" << '\t' << endl; + cout << "Parameter file set up" << endl; + + // Loop systematically over each CTD bin first + for (int c = 0; c < NCTDBins; ++c) { + + cout << "Writing output tracking parameters for CTD bin: " << c << endl; + + // Calculate the exact midpoint of this specific variable CTD bin + double ctdBinMidpoint = (g_CTDBinEdges[c] + g_CTDBinEdges[c + 1]) / 2.0; + + // Loop over the detectors found inside this specific CTD bin + for (auto const& [DetID, FitsVec] : FullDetEndpoints[c]) { + + double HVCentroid = 0.0; + double HVCentroidError = 0.0; + double LVCentroid = 0.0; + double LVCentroidError = 0.0; + + // Ensure all 3 parameters (CTD mu, HV mu, LV mu) were successfully saved + if (FitsVec.size() >= 1) { + HVCentroid = FitsVec[0]; + HVCentroidError = FitsVec[1]; + LVCentroid = FitsVec[2]; + LVCentroidError = FitsVec[3]; + } + + // Write row entries corresponding purely to the detector level measurements + OutputCalFile << DetID << '\t' + << c << '\t' + << ctdBinMidpoint << '\t' + << HVCentroid << '\t' + << HVCentroidError << '\t' + << LVCentroid << '\t' + << LVCentroidError << '\t' << endl; + } + } + + OutputCalFile.close(); + cout << "Parameters file saved successfully." << endl; + watch.Stop(); + cout << "total time (s): " << watch.CpuTime() << endl; + + return true; +} +//////////////////////////////////////////////////////////////////////////////// + + +TF1* TrappingCorrectionCs137::GeneratePhotopeakFunction() +{ + // Component 1: Core Gaussian + // exp(-(x-x0)^2 / (2*sigma^2)) + MString gaussStr = "exp(-(x-[1])^2 / (2*[2]^2))"; + + // Component 2: Exponential Tail + Shelf + // BoverA * exp(gamma*(x-x0)) * 0.5 * erfc((x-x0)/(sigma*sigma_ratio*sqrt(2))) + MString expTailStr = "[3] * exp([4]*(x-[1])) * 0.5 * erfc((x-[1])/([2]*[5]*sqrt(2)))"; + + // Component 3: Linear Tail + Shelf + // BoverA * CoverB * (1 + D*(x-x0)) * 0.5 * erfc((x-x0)/(sigma*sigma_ratio*sqrt(2))) + MString linTailStr = "[3] * [6] * (1 + [7]*(x-[1])) * 0.5 * erfc((x-[1])/([2]*[5]*sqrt(2)))"; + + // Combine components with an overall normalization scaling factor [0] + MString fullFormula = "[0] * (" + gaussStr + " + " + expTailStr + " + " + linTailStr + ")"; + + // Instantiate TF1 over your expected fit window + TF1* PhotopeakFunction = new TF1("PhotopeakFunction", fullFormula.Data(), 645, 675); + + // Set Parameter Names + PhotopeakFunction->SetParName(0, "Amplitude"); + PhotopeakFunction->SetParName(1, "x0 (Mu)"); + PhotopeakFunction->SetParName(2, "Sigma Gauss"); + PhotopeakFunction->SetParName(3, "BoverA"); + PhotopeakFunction->SetParName(4, "Gamma"); + PhotopeakFunction->SetParName(5, "Sigma Ratio"); + PhotopeakFunction->SetParName(6, "CoverB"); + PhotopeakFunction->SetParName(7, "D (Lin Slope)"); + + // Provide initial sensible guesses for a Cs137 photopeak + PhotopeakFunction->SetParameter("Amplitude", 1000); + PhotopeakFunction->SetParameter("x0 (Mu)", 661.7); + PhotopeakFunction->SetParameter("Sigma Gauss", 2.0); + PhotopeakFunction->SetParameter("BoverA", 0.05); + PhotopeakFunction->SetParameter("Gamma", 0.5); + PhotopeakFunction->SetParameter("Sigma Ratio", 0.85); + PhotopeakFunction->SetParameter("CoverB", 0.13); + PhotopeakFunction->SetParameter("D (Lin Slope)", 0.028); + + // Set boundary limits to stabilize convergence + PhotopeakFunction->SetParLimits(0, 1, 1e8); + PhotopeakFunction->SetParLimits(1, 645, 675); // Keeps peak centered around 662 keV + PhotopeakFunction->SetParLimits(2, 0.5, 10); // Prevents sigma from blowing up or hitting zero + PhotopeakFunction->SetParLimits(3, 0.0, 1.0); // Tail shouldn't be larger than the main peak + PhotopeakFunction->SetParLimits(4, 0.001, 2.0); // Standard range for exponential decay factor + PhotopeakFunction->SetParLimits(5, 0.1, 5.0); // Ratio of shelf width to peak width + PhotopeakFunction->SetParLimits(6, 0.0, 5.0); + PhotopeakFunction->SetParLimits(7, -1.0, 1.0); + // // Gaussian with a low-E shelf + // TF1* PhotopeakFunction = new TF1("PhotopeakFunction", "gaus(0) + [0]*[3]*(1 - erf((x-[1])/(sqrt(2)*[2])))", 620, 680); + + // PhotopeakFunction->SetParName(0, "Gauss norm"); + // PhotopeakFunction->SetParName(1, "Mu"); + // PhotopeakFunction->SetParName(2, "Sigma"); + // PhotopeakFunction->SetParName(3, "Shelf norm"); + + // PhotopeakFunction->SetParameter("Gauss norm", 1000); + // PhotopeakFunction->SetParameter("Mu", 661.7); + // PhotopeakFunction->SetParameter("Sigma", 2); + // PhotopeakFunction->SetParameter("Shelf norm", 0.05); + + // PhotopeakFunction->SetParLimits(0, 10, 1e8); + // PhotopeakFunction->SetParLimits(1, 652, 672); + // PhotopeakFunction->SetParLimits(2, 1.0, 10); + // PhotopeakFunction->SetParLimits(3, 0, 0.1); + + return PhotopeakFunction; +} + + +//////////////////////////////////////////////////////////////////////////////// + + +TrappingCorrectionCs137* g_Prg = 0; +int g_NInterruptCatches = 1; + +//////////////////////////////////////////////////////////////////////////////// + + +//! Called when an interrupt signal is flagged +//! All catched signals lead to a well defined exit of the program +void CatchSignal(int a) +{ + if (g_Prg != 0 && g_NInterruptCatches-- > 0) { + cout<<"Catched signal Ctrl-C (ID="<Interrupt(); + } else { + abort(); + } +} + + +//////////////////////////////////////////////////////////////////////////////// + + +//! Main program +int main(int argc, char** argv) +{ + // Catch a user interupt for graceful shutdown + signal(SIGINT, CatchSignal); + + // Initialize global MEGALIB variables, especially mgui, etc. + MGlobal::Initialize("TrappingCorrectionCs137", "A standalone program to determine CTD-dependent shifts of the Cs137 peak"); + + TApplication TrappingCorrectionApp("TrappingCorrectionApp", 0, 0); + + InitializeCTDBins(); + + g_Prg = new TrappingCorrectionCs137(); + + if (g_Prg->ParseCommandLine(argc, argv) == false) { + cerr<<"Error during parsing of command line!"<Analyze() == false) { + cerr<<"Error during analysis!"< +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +// MEGAlib libs: +#include "MGlobal.h" +#include "MGUIERBList.h" + +// NuSTAR libs +#include "MGUIExpo.h" + +// Forward declarations: + + +//////////////////////////////////////////////////////////////////////////////// + + +class MGUIExpoTrappingCorrection : public MGUIExpo +{ + // public Session: + public: + //! Default constructor + MGUIExpoTrappingCorrection(MModule* Module); + //! Default destructor + virtual ~MGUIExpoTrappingCorrection(); + + //! The creation part which gets overwritten + virtual void Create(); + + //! Update the frame + virtual void Update(); + + //! Reset the data in the UI + virtual void Reset(); + + //! Export the data in the UI + virtual void Export(const MString& FileName); + + //! Set the energy histogram parameters + void SetEnergyHistogramParameters(int NBins, double Min, double Max); + + //! Add data to the uncorrected energy histogram + void AddEnergyInitial(double Energy, bool IsNearestNeighbor, bool IsLV); + + //! Add data to the corrected energy histogram + void AddEnergyFinal(double Energy, bool IsNearestNeighbor, bool IsLV); + + // //! Add data to the energy histogram + // void AddEnergy(double Energy); + + // Callback slot for the Apply button + void OnApply(); + + // Getters for Finalize analysis + TH1D* GetEnergyHistogramLVInitial() const { return m_EnergyLVInitial; } + TH1D* GetEnergyHistogramLVFinal() const { return m_EnergyLVFinal; } + TH1D* GetEnergyHistogramHVInitial() const { return m_EnergyHVInitial; } + TH1D* GetEnergyHistogramHVFinal() const { return m_EnergyHVFinal; } + + + // protected methods: + protected: + + + // protected members: + protected: + + // private members: + private: + // //! Energy canvas + // TRootEmbeddedCanvas* m_EnergyCanvas; + // //! Energy histogram + // TH1D* m_Energy; + + //! Energy Histograms + TH1D* m_EnergyLVInitial; + TH1D* m_EnergyLVFinal; + TH1D* m_EnergyHVInitial; + TH1D* m_EnergyHVFinal; + + //! Canvases & Display elements + TRootEmbeddedCanvas* m_CanvasLV; + TRootEmbeddedCanvas* m_CanvasHV; + TLegend* m_LegendLV; + TLegend* m_LegendHV; + + //! Interactive Control Widgets + TGNumberEntry* m_EntryNBins; + TGNumberEntry* m_EntryMinEnergy; + TGNumberEntry* m_EntryMaxEnergy; + TGTextButton* m_ButtonApply; + + TGCheckButton* m_CheckLogY; + + //! GUI input for peak position + TGNumberEntry* m_EntryPhotopeakMu; + +#ifdef ___CLING___ + public: + ClassDef(MGUIExpoTrappingCorrection, 1) // basic class for dialog windows +#endif + +}; + +#endif + + +//////////////////////////////////////////////////////////////////////////////// diff --git a/include/MGUIOptionsTrappingCorrection.h b/include/MGUIOptionsTrappingCorrection.h new file mode 100644 index 00000000..f80bd8ca --- /dev/null +++ b/include/MGUIOptionsTrappingCorrection.h @@ -0,0 +1,87 @@ +/* + * MGUIOptionsTrappingCorrection.h + * + * Copyright (C) by Sophie Haight and Andreas Zoglauer. + * All rights reserved. + * + * Please see the source-file for the copyright-notice.:q + * + */ + + +#ifndef __MGUIOptionsTrappingCorrection__ +#define __MGUIOptionsTrappingCorrection__ + + +//////////////////////////////////////////////////////////////////////////////// + + +// ROOT libs: +#include +#include +#include +#include +#include +#include +#include +#include + +// MEGAlib libs: +#include "MGlobal.h" +#include "MGUIEFileSelector.h" +#include "MGUIOptions.h" +#include "MGUIERBList.h" +#include "MGUIEEntry.h" + +// Nuclearizer libs: +#include "MModule.h" + + +// Forward declarations: + + +//////////////////////////////////////////////////////////////////////////////// + + +//! The user interface for the universal energy calibration +class MGUIOptionsTrappingCorrection : public MGUIOptions +{ + // public Session: + public: + //! Default constructor + MGUIOptionsTrappingCorrection(MModule* Module); + //! Default destructor + virtual ~MGUIOptionsTrappingCorrection(); + + //! The creation part which gets overwritten + virtual void Create(); + + // protected methods: + protected: + + //! Actions after the Apply or OK button has been pressed + virtual bool OnApply(); + + + + // protected members: + protected: + + // private members: + private: + + //! Select which file to load + MGUIEFileSelector* m_SimCCEFileSelector; + + +#ifdef ___CLING___ + public: + ClassDef(MGUIOptionsTrappingCorrection, 1) +#endif + +}; + +#endif + + +//////////////////////////////////////////////////////////////////////////////// diff --git a/include/MHit.h b/include/MHit.h index d0646d5e..f96711ff 100644 --- a/include/MHit.h +++ b/include/MHit.h @@ -79,6 +79,14 @@ class MHit MVector GetPositionResolution() const { return m_PositionResolution; } + // Local Position: + + //! Set the local/raw position of the hit + void SetLocalPosition(const MVector& Position) { m_LocalPosition = Position; } + //! Return the local/raw position of the hit + MVector GetLocalPosition() const { return m_LocalPosition; } + + // Energy: //! Set the energy @@ -186,6 +194,10 @@ class MHit //! Position resolution of the hit MVector m_PositionResolution; + + //! Position of the hit in local detector coordinates + MVector m_LocalPosition; + //! Energy of the hit double m_Energy; //! Energy resolution of the hit diff --git a/include/MModuleDepthCalibration.h b/include/MModuleDepthCalibration.h index b9cc66e3..1930efff 100644 --- a/include/MModuleDepthCalibration.h +++ b/include/MModuleDepthCalibration.h @@ -132,13 +132,17 @@ class MModuleDepthCalibration : public MModule //! Create the XML configuration MXmlNode* CreateXmlConfiguration(); + //! Returns the strip with most energy from vector Strips, also gives back the energy fraction + MStripHit* GetDominantStrip(std::vector& Strips, double& EnergyFraction); + + //! Determine the Grade (geometry of charge sharing) of the Hit + int GetHitGrade(MHit* H); + //! Finalize void Finalize(); // protected methods: protected: - //! Returns the strip with most energy from vector Strips, also gives back the energy fraction - MStripHit* GetDominantStrip(std::vector& Strips, double& EnergyFraction); //! Retrieve the appropriate Depth values given the DetID vector GetDepth(int DetID); @@ -154,9 +158,6 @@ class MModuleDepthCalibration : public MModule //! Adds a Depth-to-CTD relation bool AddDepthCTD(vector Depth, vector> CTDArr, int DetID, unordered_map>& DepthGrid, unordered_map>>& CTDMap, unordered_map>& SplineMap, unsigned int NPoints); - //! Determine the Grade (geometry of charge sharing) of the Hit - int GetHitGrade(MHit* H); - //! Return the coefficients for a pixel vector* GetPixelCoeffs(int PixelCode); diff --git a/include/MModuleTrappingCorrection.h b/include/MModuleTrappingCorrection.h new file mode 100644 index 00000000..ebf8fd52 --- /dev/null +++ b/include/MModuleTrappingCorrection.h @@ -0,0 +1,175 @@ +/* + * MModuleTrappingCorrection.h + * + * Copyright (C) 2008-2008 by Andreas Zoglauer. + * All rights reserved. + * + * Please see the source-file for the copyright-notice. + * + */ + + +#ifndef __MModuleTrappingCorrection__ +#define __MModuleTrappingCorrection__ + + +//////////////////////////////////////////////////////////////////////////////// + + +// Standard libs: +#include +#include +#include +#include + +// ROOT libs: + +// MEGAlib libs: +#include "MGlobal.h" +#include "MModule.h" +#include "MGUIEEntry.h" + + + +// Nuclearizer libs: +#include "MGUIExpoPlotSpectrum.h" +#include "MModuleEnergyCalibration.h" +#include "MGUIExpoTrappingCorrection.h" +#include "MGUIOptionsTrappingCorrection.h" +#include "MModuleDepthCalibration.h" + +// Forward declarations: + + +//////////////////////////////////////////////////////////////////////////////// + + +class MModuleTrappingCorrection : public MModule +{ + // public interface: + public: + //! Default constructor + MModuleTrappingCorrection(); + //! Default destructor + virtual ~MModuleTrappingCorrection(); + + //! Create a new object of this class + virtual MModuleTrappingCorrection* Clone() { return new MModuleTrappingCorrection(); } + + //! Initialize the module + virtual bool Initialize(); + + //! Create the expos + virtual void CreateExpos(); + + //! Main data analysis routine, which updates the event to a new level + virtual bool AnalyzeEvent(MReadOutAssembly* Event); + + //! Show the options GUI + virtual void ShowOptionsGUI(); + + //! Set filename for SimCCE file + void SetSimCCEFileName( const MString& FileName) { m_SimCCEFileName = FileName; } + + //! Get filename for SimCCE file + MString GetSimCCEFileName() const { return m_SimCCEFileName; } + + //! Finalize the module + virtual void Finalize(); + + //! Read the XML configuration + bool ReadXmlConfiguration(MXmlNode* Node); + + //! Create the XML configuration + MXmlNode* CreateXmlConfiguration(); + + //! Set the photopeak mu value + void SetPhotopeakMu(double mu) { m_PhotopeakMu = mu; } + + //! Get the photopeak mu value + double GetPhotopeakMu() const { return m_PhotopeakMu; } + + //! Get photopeak fit min + double GetFitMinEnergy() const { return m_PhotopeakMu - 20.0; } + + //! Get photopeak fit max + double GetFitMaxEnergy() const { return m_PhotopeakMu + 20.0; } + + // protected methods: + protected: + + //! Load in the specified SimCCE file + bool LoadSimCCEFile(MString FName); + + //! Get the Sim-based corrected energy given the depth value, uncorrected energy, and the sorted Sim CCE values + double GetSimBasedCorrectedEnergy(double depth_val, double uncorrected_energy, const std::vector& depths, const std::vector& sim_cce_sorted_e, const std::vector& sim_cce_sorted_h, double paramB, double paramC); + + //! Interpolate a value given x, xp, and fp + double Interpolate(double x, const std::vector& xp, const std::vector& fp); + + + + // private methods + private: + + + // protected members: + protected: + + double m_SimCCE_Energy; + MString m_SimCCEFileName; + + // unordered_map m_Detectors; + vector m_DetectorIDs; + MModuleEnergyCalibration* m_EnergyCalibration; + MGUIExpoTrappingCorrection* m_ExpoTrappingCorrection; + + bool m_SimCCEFileIsLoaded; + + // private members: + private: + + MModuleDepthCalibration* m_DepthCalibration = nullptr; + + //! Updated GUI to display the energy histogram + MGUIExpoTrappingCorrection* m_ExpoSpectrum; + + TF1* GeneratePhotopeakFunction(); + + TGCheckButton* m_LogYButton; + + //! Default centroid value + double m_PhotopeakMu = 661.7; + + //! struct definition for trapping parameters and CCE curves for each detector + struct DetectorTrappingData { + double m_ParamA_HV = 1.0; + double m_ParamA_LV = 1.0; + double m_ParamB = 0.0; + double m_ParamC = 0.0; + + std::vector m_Depths; + std::vector m_CCEs_HV_e; + std::vector m_CCEs_HV_h; + std::vector m_CCEs_LV_e; + std::vector m_CCEs_LV_h; + }; + + //! Helper method using the struct pointer + const DetectorTrappingData* GetDetectorData(int DetID) const; + + //! Stores trapping parameters and CCE curves for all loaded detectors + std::map m_DetectorParamMap; + + +#ifdef ___CLING___ + public: + ClassDef(MModuleTrappingCorrection, 0) // no description +#endif + +}; + +#endif + + +//////////////////////////////////////////////////////////////////////////////// diff --git a/resource/calibration/COSISMEX/unit/charge_trapping/61617-FM2_trapping_parameters_30bins.csv b/resource/calibration/COSISMEX/unit/charge_trapping/61617-FM2_trapping_parameters_30bins.csv new file mode 100644 index 00000000..dbbc05fe --- /dev/null +++ b/resource/calibration/COSISMEX/unit/charge_trapping/61617-FM2_trapping_parameters_30bins.csv @@ -0,0 +1,154 @@ +### 0 +1.0005395024292834,1.000228766953486,1.5510370448930642e-14,0.019168117201857484 +# z_depth_cm,e_CCE_HV,h_CCE_HV,e_CCE_LV,h_CCE_LV +-0.783216,0.9956788141993956,0.9999999055891328,0.999478285547745,1.0 +-0.77278356288,0.9957249811178248,1.0,0.99951954309672,0.9999976397280969 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-137,6 +138,7 @@ MAssembly::MAssembly() m_Supervisor->AddAvailableModule(new MModuleStripPairingMultiRoundChiSquare()); m_Supervisor->AddAvailableModule(new MModuleStripPairingChiSquare()); m_Supervisor->AddAvailableModule(new MModuleDepthCalibration()); + m_Supervisor->AddAvailableModule(new MModuleTrappingCorrection()); m_Supervisor->AddAvailableModule(new MModuleEventSaver()); m_Supervisor->AddAvailableModule(new MModuleSaverMeasurementsL0()); diff --git a/src/MGUIExpoTrappingCorrection.cxx b/src/MGUIExpoTrappingCorrection.cxx new file mode 100644 index 00000000..d120a524 --- /dev/null +++ b/src/MGUIExpoTrappingCorrection.cxx @@ -0,0 +1,408 @@ +/* + * MGUIExpoTrappingCorrection.cxx + * + * + * Copyright (C) by Andreas Zoglauer + * All rights reserved. + * + * + * This code implementation is the intellectual property of + * Andreas Zoglauer. + * + * By copying, distributing or modifying the Program (or any work + * based on the Program) you indicate your acceptance of this statement, + * and all its terms. + * + */ + + +// Include the header: +#include "MGUIExpoTrappingCorrection.h" + +// Standard libs: + +// ROOT libs: +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +// MEGAlib libs: +#include "MStreams.h" + +// Nuclearizer libs: +#include "MModuleTrappingCorrection.h" + + + +//////////////////////////////////////////////////////////////////////////////// + + +#ifdef ___CLING___ +ClassImp(MGUIExpoTrappingCorrection) +#endif + +//////////////////////////////////////////////////////////////////////////////// + +MGUIExpoTrappingCorrection::MGUIExpoTrappingCorrection(MModule* Module) : MGUIExpo(Module) +{ + m_TabTitle = "Trapping Correction"; + + double eMin = 0.0; + double eMax = 2000.0; + int nBins = 20000; + + + // LV Histograms + m_EnergyLVInitial = new TH1D("EnergyLVInitial", "LV Spectrum (Uncorrected vs Corrected)", nBins, eMin, eMax); + m_EnergyLVInitial->SetXTitle("Energy [keV]"); + m_EnergyLVInitial->SetYTitle("Counts"); + m_EnergyLVInitial->GetYaxis()->SetNoExponent(kTRUE); + m_EnergyLVInitial->SetLineColor(kGray+2); + m_EnergyLVInitial->SetLineWidth(2); + m_EnergyLVInitial->SetLineStyle(2); + + m_EnergyLVFinal = new TH1D("EnergyLVFinal", "LV Spectrum (Uncorrected vs Corrected)", nBins, eMin, eMax); + m_EnergyLVFinal->SetXTitle("Energy [keV]"); + m_EnergyLVFinal->SetYTitle("Counts"); + m_EnergyLVFinal->GetYaxis()->SetNoExponent(kTRUE); + m_EnergyLVFinal->SetLineColor(kAzure+1); + m_EnergyLVFinal->SetLineWidth(2); + m_EnergyLVFinal->SetFillColorAlpha(kAzure-9, 0.35); + + // HV Histograms + m_EnergyHVInitial = new TH1D("EnergyHVInitial", "HV Spectrum (Uncorrected vs Corrected)", nBins, eMin, eMax); + m_EnergyHVInitial->SetXTitle("Energy [keV]"); + m_EnergyHVInitial->SetYTitle("Counts"); + m_EnergyHVInitial->GetYaxis()->SetNoExponent(kTRUE); + m_EnergyHVInitial->SetLineColor(kGray+2); + m_EnergyHVInitial->SetLineWidth(2); + m_EnergyHVInitial->SetLineStyle(2); + + m_EnergyHVFinal = new TH1D("EnergyHVFinal", "HV Spectrum (Uncorrected vs Corrected)", nBins, eMin, eMax); + m_EnergyHVFinal->SetXTitle("Energy [keV]"); + m_EnergyHVFinal->SetYTitle("Counts"); + m_EnergyHVFinal->GetYaxis()->SetNoExponent(kTRUE); + m_EnergyHVFinal->SetLineColor(kOrange+7); + m_EnergyHVFinal->SetLineWidth(2); + m_EnergyHVFinal->SetFillColorAlpha(kOrange-9, 0.35); + + // Initialize canvases and buttons + m_CanvasLV = nullptr; + m_CanvasHV = nullptr; + m_LegendLV = nullptr; + m_LegendHV = nullptr; + + m_EntryNBins = nullptr; + m_EntryMinEnergy = nullptr; + m_EntryMaxEnergy = nullptr; + m_CheckLogY = nullptr; + m_ButtonApply = nullptr; + + SetCleanup(kDeepCleanup); +} + +//////////////////////////////////////////////////////////////////////////////// + +MGUIExpoTrappingCorrection::~MGUIExpoTrappingCorrection() +{ + // Memory cleanup handled by ROOT's kDeepCleanup +} + +//////////////////////////////////////////////////////////////////////////////// + +void MGUIExpoTrappingCorrection::Create() +{ + if (m_IsCreated == true) return; + + m_Mutex.Lock(); + + double defaultMu = 661.7; // Default for Cs-137 + double nBins = 1000; + + // Top control frame + TGHorizontalFrame* ControlFrame = new TGHorizontalFrame(this, 800, 30); + + // Binning entry + TGLabel* LabelBins = new TGLabel(ControlFrame, "Bins:"); + ControlFrame->AddFrame(LabelBins, new TGLayoutHints(kLHintsLeft | kLHintsCenterY, 5, 2, 2, 2)); + + m_EntryNBins = new TGNumberEntry(ControlFrame, nBins, 5, -1, TGNumberFormat::kNESInteger, TGNumberFormat::kNEAPositive); + ControlFrame->AddFrame(m_EntryNBins, new TGLayoutHints(kLHintsLeft | kLHintsCenterY, 2, 10, 2, 2)); + + // Photopeak Mu entry + TGLabel* LabelMu = new TGLabel(ControlFrame, "Photopeak [keV]:"); + ControlFrame->AddFrame(LabelMu, new TGLayoutHints(kLHintsLeft | kLHintsCenterY, 5, 2, 2, 2)); + + m_EntryPhotopeakMu = new TGNumberEntry(ControlFrame, defaultMu, 6, -1, TGNumberFormat::kNESRealOne); + ControlFrame->AddFrame(m_EntryPhotopeakMu, new TGLayoutHints(kLHintsLeft | kLHintsCenterY, 2, 10, 2, 2)); + + // Log Y Checkbox + m_CheckLogY = new TGCheckButton(ControlFrame, "Log Y Scale"); + ControlFrame->AddFrame(m_CheckLogY, new TGLayoutHints(kLHintsLeft | kLHintsCenterY, 10, 10, 2, 2)); + m_CheckLogY->Connect("Clicked()", "MGUIExpoTrappingCorrection", this, "OnApply()"); + + // Apply Button + m_ButtonApply = new TGTextButton(ControlFrame, " Apply "); + ControlFrame->AddFrame(m_ButtonApply, new TGLayoutHints(kLHintsLeft | kLHintsCenterY, 5, 5, 2, 2)); + m_ButtonApply->Connect("Clicked()", "MGUIExpoTrappingCorrection", this, "OnApply()"); + + AddFrame(ControlFrame, new TGLayoutHints(kLHintsTop | kLHintsExpandX, 5, 5, 5, 2)); + + // Main Canvas Frame (Side-by-Side Plots) + TGLayoutHints* CanvasLayout = new TGLayoutHints(kLHintsTop | kLHintsLeft | kLHintsExpandX | kLHintsExpandY, 2, 2, 2, 2); + TGHorizontalFrame* HFrame = new TGHorizontalFrame(this); + AddFrame(HFrame, CanvasLayout); + + // LV Canvas setup + m_CanvasLV = new TRootEmbeddedCanvas("CanvasLV", HFrame, 100, 100); + HFrame->AddFrame(m_CanvasLV, CanvasLayout); + + m_CanvasLV->GetCanvas()->cd(); + m_CanvasLV->GetCanvas()->SetGridx(); + m_CanvasLV->GetCanvas()->SetGridy(); + + m_EnergyLVInitial->Draw("HIST"); + m_EnergyLVFinal->Draw("HIST SAME"); + + m_LegendLV = new TLegend(0.55, 0.72, 0.88, 0.88); + m_LegendLV->AddEntry(m_EnergyLVInitial, "LV Uncorrected", "l"); + m_LegendLV->AddEntry(m_EnergyLVFinal, "LV Corrected", "f"); + m_LegendLV->Draw(); + + // HV Canvas setup + m_CanvasHV = new TRootEmbeddedCanvas("CanvasHV", HFrame, 100, 100); + HFrame->AddFrame(m_CanvasHV, CanvasLayout); + + m_CanvasHV->GetCanvas()->cd(); + m_CanvasHV->GetCanvas()->SetGridx(); + m_CanvasHV->GetCanvas()->SetGridy(); + + m_EnergyHVInitial->Draw("HIST"); + m_EnergyHVFinal->Draw("HIST SAME"); + + m_LegendHV = new TLegend(0.55, 0.72, 0.88, 0.88); + m_LegendHV->AddEntry(m_EnergyHVInitial, "HV Uncorrected", "l"); + m_LegendHV->AddEntry(m_EnergyHVFinal, "HV Corrected", "f"); + m_LegendHV->Draw(); + + MapSubwindows(); + Layout(); + + // Signal that the canvas has been created so we know when we can start to fill it + m_IsCreated = true; + + m_Mutex.UnLock(); +} + +//////////////////////////////////////////////////////////////////////////////// + +void MGUIExpoTrappingCorrection::OnApply() +{ + if (m_IsCreated == false) return; + if (m_EntryNBins == nullptr || m_EntryPhotopeakMu == nullptr) return; + + int nBins = m_EntryNBins->GetIntNumber(); + double mu = m_EntryPhotopeakMu->GetNumber(); + + if (mu <= 20.0 || nBins <= 0) return; + + // Calculate dynamic histogram bounds based on mu + double minE = mu - 50.0; + double maxE = mu + 50.0; + + // Pass mu directly to the underlying module + if (m_Module != nullptr) { + // Dynamic cast if m_Module is stored as a generic MModule* + MModuleTrappingCorrection* module = dynamic_cast(m_Module); + if (module != nullptr) { + module->SetPhotopeakMu(mu); + } + } + + SetEnergyHistogramParameters(nBins, minE, maxE); + Update(); +} + +//////////////////////////////////////////////////////////////////////////////// + +void MGUIExpoTrappingCorrection::SetEnergyHistogramParameters(int NBins, double Min, double Max) +{ + m_Mutex.Lock(); + + // Zoom the X-axis view without altering underlying histogram data or bin contents + if (m_EnergyLVInitial != nullptr) m_EnergyLVInitial->GetXaxis()->SetRangeUser(Min, Max); + if (m_EnergyLVFinal != nullptr) m_EnergyLVFinal->GetXaxis()->SetRangeUser(Min, Max); + if (m_EnergyHVInitial != nullptr) m_EnergyHVInitial->GetXaxis()->SetRangeUser(Min, Max); + if (m_EnergyHVFinal != nullptr) m_EnergyHVFinal->GetXaxis()->SetRangeUser(Min, Max); + + // Update entry box + if (m_EntryNBins != nullptr) m_EntryNBins->SetIntNumber(NBins); + + m_Mutex.UnLock(); +} +//////////////////////////////////////////////////////////////////////////////// + +void MGUIExpoTrappingCorrection::Update() +{ + if (m_IsCreated == false) return; + + m_Mutex.Lock(); + + bool isLog = (m_CheckLogY != nullptr && m_CheckLogY->IsOn()); + + // Helper lambda to calculate max content strictly within visible X-axis range + auto GetVisibleMax = [](TH1D* hist) -> double { + if (hist == nullptr) return 0.0; + + TAxis* axis = hist->GetXaxis(); + int minBin = axis->GetFirst(); // First visible bin + int maxBin = axis->GetLast(); // Last visible bin + + double maxVal = 0.0; + for (int b = minBin; b <= maxBin; ++b) { + double content = hist->GetBinContent(b); + if (content > maxVal) maxVal = content; + } + return maxVal; + }; + + // --- Update LV Canvas --- + if (m_CanvasLV != nullptr && m_CanvasLV->GetCanvas() != nullptr) { + TCanvas* canvasLV = m_CanvasLV->GetCanvas(); + canvasLV->cd(); + canvasLV->SetLogy(isLog ? 1 : 0); + + double realMaxLV = std::max(GetVisibleMax(m_EnergyLVInitial), GetVisibleMax(m_EnergyLVFinal)); + + if (isLog) { + double minLogLV = (realMaxLV > 0.1) ? 0.1 : 0.01; + double maxLogLV = (realMaxLV > 0.1) ? realMaxLV * 5.0 : 10.0; + + m_EnergyLVInitial->SetMinimum(minLogLV); + m_EnergyLVInitial->SetMaximum(maxLogLV); + m_EnergyLVFinal->SetMinimum(minLogLV); + m_EnergyLVFinal->SetMaximum(maxLogLV); + } else { + m_EnergyLVInitial->SetMinimum(-1111); + m_EnergyLVInitial->SetMaximum(-1111); + m_EnergyLVFinal->SetMinimum(-1111); + m_EnergyLVFinal->SetMaximum(-1111); + + double maxLinLV = (realMaxLV > 0) ? realMaxLV * 1.15 : 10.0; + m_EnergyLVInitial->SetMinimum(0.0); + m_EnergyLVInitial->SetMaximum(maxLinLV); + m_EnergyLVFinal->SetMinimum(0.0); + m_EnergyLVFinal->SetMaximum(maxLinLV); + } + + canvasLV->Modified(); + canvasLV->Update(); + } + + // --- Update HV Canvas --- + if (m_CanvasHV != nullptr && m_CanvasHV->GetCanvas() != nullptr) { + TCanvas* canvasHV = m_CanvasHV->GetCanvas(); + canvasHV->cd(); + canvasHV->SetLogy(isLog ? 1 : 0); + + double realMaxHV = std::max(GetVisibleMax(m_EnergyHVInitial), GetVisibleMax(m_EnergyHVFinal)); + + if (isLog) { + double minLogHV = (realMaxHV > 0.1) ? 0.1 : 0.01; + double maxLogHV = (realMaxHV > 0.1) ? realMaxHV * 5.0 : 10.0; + + m_EnergyHVInitial->SetMinimum(minLogHV); + m_EnergyHVInitial->SetMaximum(maxLogHV); + m_EnergyHVFinal->SetMinimum(minLogHV); + m_EnergyHVFinal->SetMaximum(maxLogHV); + } else { + m_EnergyHVInitial->SetMinimum(-1111); + m_EnergyHVInitial->SetMaximum(-1111); + m_EnergyHVFinal->SetMinimum(-1111); + m_EnergyHVFinal->SetMaximum(-1111); + + double maxLinHV = (realMaxHV > 0) ? realMaxHV * 1.15 : 10.0; + m_EnergyHVInitial->SetMinimum(0.0); + m_EnergyHVInitial->SetMaximum(maxLinHV); + m_EnergyHVFinal->SetMinimum(0.0); + m_EnergyHVFinal->SetMaximum(maxLinHV); + } + + canvasHV->Modified(); + canvasHV->Update(); + } + + m_Mutex.UnLock(); +} + +//////////////////////////////////////////////////////////////////////////////// + +void MGUIExpoTrappingCorrection::Reset() +{ + m_Mutex.Lock(); + + if (m_EnergyLVInitial != nullptr) m_EnergyLVInitial->Reset(); + if (m_EnergyLVFinal != nullptr) m_EnergyLVFinal->Reset(); + if (m_EnergyHVInitial != nullptr) m_EnergyHVInitial->Reset(); + if (m_EnergyHVFinal != nullptr) m_EnergyHVFinal->Reset(); + + m_Mutex.UnLock(); +} + +//////////////////////////////////////////////////////////////////////////////// + +void MGUIExpoTrappingCorrection::AddEnergyInitial(double Energy, bool IsNearestNeighbor, bool IsLV) +{ + m_Mutex.Lock(); + + if (IsLV == true) { + if (m_EnergyLVInitial != nullptr) m_EnergyLVInitial->Fill(Energy); + } else { + if (m_EnergyHVInitial != nullptr) m_EnergyHVInitial->Fill(Energy); + } + + m_Mutex.UnLock(); +} + +//////////////////////////////////////////////////////////////////////////////// + +void MGUIExpoTrappingCorrection::AddEnergyFinal(double Energy, bool IsNearestNeighbor, bool IsLV) +{ + m_Mutex.Lock(); + + if (IsLV == true) { + if (m_EnergyLVFinal != nullptr) m_EnergyLVFinal->Fill(Energy); + } else { + if (m_EnergyHVFinal != nullptr) m_EnergyHVFinal->Fill(Energy); + } + + m_Mutex.UnLock(); +} + +//////////////////////////////////////////////////////////////////////////////// + +void MGUIExpoTrappingCorrection::Export(const MString& FileName) +{ + m_Mutex.Lock(); + + if (m_CanvasLV != nullptr && m_CanvasLV->GetCanvas() != nullptr) { + MString nameLV = FileName; + nameLV.ReplaceAll(".png", "_LV.png"); + m_CanvasLV->GetCanvas()->SaveAs(nameLV); + } + + if (m_CanvasHV != nullptr && m_CanvasHV->GetCanvas() != nullptr) { + MString nameHV = FileName; + nameHV.ReplaceAll(".png", "_HV.png"); + m_CanvasHV->GetCanvas()->SaveAs(nameHV); + } + + m_Mutex.UnLock(); +} \ No newline at end of file diff --git a/src/MGUIOptionsTrappingCorrection.cxx b/src/MGUIOptionsTrappingCorrection.cxx new file mode 100644 index 00000000..117ba531 --- /dev/null +++ b/src/MGUIOptionsTrappingCorrection.cxx @@ -0,0 +1,99 @@ +/* + * MGUIOptionsTrappingCorrection.cxx + * + * + * Copyright (C) by Andreas Zoglauer. + * All rights reserved. + * + * + * This code implementation is the intellectual property of + * Andreas Zoglauer. + * + * By copying, distributing or modifying the Program (or any work + * based on the Program) you indicate your acceptance of this statement, + * and all its terms. + * + */ + + +// Include the header: +#include "MGUIOptionsTrappingCorrection.h" + +// Standard libs: + +// ROOT libs: +#include +#include +#include +#include + +// MEGAlib libs: +#include "MStreams.h" +#include "MModule.h" +#include "MModuleTrappingCorrection.h" + + +//////////////////////////////////////////////////////////////////////////////// + + +#ifdef ___CLING___ +ClassImp(MGUIOptionsTrappingCorrection) +#endif + + +//////////////////////////////////////////////////////////////////////////////// + + +MGUIOptionsTrappingCorrection::MGUIOptionsTrappingCorrection(MModule* Module) + : MGUIOptions(Module) +{ + // standard constructor +} + + +//////////////////////////////////////////////////////////////////////////////// + + +MGUIOptionsTrappingCorrection::~MGUIOptionsTrappingCorrection() +{ + // kDeepCleanup is activated +} + + +//////////////////////////////////////////////////////////////////////////////// + + +void MGUIOptionsTrappingCorrection::Create() +{ + PreCreate(); + + m_SimCCEFileSelector = new MGUIEFileSelector(m_OptionsFrame, "Select a trapping parameter file:", + dynamic_cast(m_Module)->GetSimCCEFileName()); + m_SimCCEFileSelector->SetFileType("trapping parameters", "*.csv"); + TGLayoutHints* LabelLayout = new TGLayoutHints(kLHintsTop | kLHintsCenterX | kLHintsExpandX, 10, 10, 10, 10); + m_OptionsFrame->AddFrame(m_SimCCEFileSelector, LabelLayout); + + TGLayoutHints* RBLayout = new TGLayoutHints(kLHintsLeft | kLHintsTop, 40, 10, 2, 0); + TGLayoutHints* RBOptionLayout = new TGLayoutHints(kLHintsLeft | kLHintsTop, 60, 10, 2, 0); + TGLayoutHints* RBOptionStretchLayout = new TGLayoutHints(kLHintsLeft | kLHintsTop | kLHintsExpandX, 60, 10, 2, 0); + + + PostCreate(); +} + + +//////////////////////////////////////////////////////////////////////////////// + + +bool MGUIOptionsTrappingCorrection::OnApply() +{ + // Modify this to store the data in the module! + + dynamic_cast(m_Module)->SetSimCCEFileName(m_SimCCEFileSelector->GetFileName()); + + return true; +} + + +// MGUIOptionsTrappingCorrection: the end... +//////////////////////////////////////////////////////////////////////////////// diff --git a/src/MHit.cxx b/src/MHit.cxx index e1c09a21..5ac40c7a 100644 --- a/src/MHit.cxx +++ b/src/MHit.cxx @@ -74,6 +74,8 @@ void MHit::Clear() m_Position = g_VectorNotDefined; m_Energy = g_DoubleNotDefined; + m_LocalPosition = g_VectorNotDefined; + m_LVEnergy = g_DoubleNotDefined; m_HVEnergy = g_DoubleNotDefined; diff --git a/src/MModuleDepthCalibration.cxx b/src/MModuleDepthCalibration.cxx index d093d9f5..9944f83e 100644 --- a/src/MModuleDepthCalibration.cxx +++ b/src/MModuleDepthCalibration.cxx @@ -407,6 +407,8 @@ bool MModuleDepthCalibration::AnalyzeEvent(MReadOutAssembly* Event) H->SetPositionResolution(GlobalResolution); + H->SetLocalPosition(LocalPosition); + } diff --git a/src/MModuleTrappingCorrection.cxx b/src/MModuleTrappingCorrection.cxx new file mode 100644 index 00000000..c6beaa6b --- /dev/null +++ b/src/MModuleTrappingCorrection.cxx @@ -0,0 +1,626 @@ +/* + * MModuleTrappingCorrection.cxx + * + * + * Copyright (C) 2008-2008 by Andreas Zoglauer, Alex Lowell, + * Sophie Haight, Carolyn Kierans. + * All rights reserved. + * + * + * This code implementation is the intellectual property of + * Andreas Zoglauer. + * + * By copying, distributing or modifying the Program (or any work + * based on the Program) you indicate your acceptance of this statement, + * and all its terms. + * + */ + + +//////////////////////////////////////////////////////////////////////////////// +// +// MModuleTrappingCorrection +// +//////////////////////////////////////////////////////////////////////////////// + + +// Include the header: +#include "MModuleTrappingCorrection.h" + +// Standard libs: + +// ROOT libs: +#include "TMath.h" +#include "TGClient.h" +#include "TH1.h" + +// MEGAlib libs: +#include "MString.h" + +// Nuclearizer libs: +#include "MGUIOptionsTrappingCorrection.h" +#include "MGUIExpoTrappingCorrection.h" +#include "MGUIExpoPlotSpectrum.h" +#include "MModuleEnergyCalibration.h" +#include "MModuleDepthCalibration.h" + + +//////////////////////////////////////////////////////////////////////////////// + + +#ifdef ___CLING___ +ClassImp(MModuleTrappingCorrection) +#endif + + +//////////////////////////////////////////////////////////////////////////////// + + +MModuleTrappingCorrection::MModuleTrappingCorrection() : MModule() +{ + // Construct an instance of MModuleTrappingCorrection + + // Set all module relevant information + + // Set the module name --- has to be unique + m_Name = "Trapping Correction"; // - correcting energies for charge trapping (by Sophie); + + // Set the XML tag --- has to be unique --- no spaces allowed + m_XmlTag = "XmlTagTrappingCorrection"; + + // Set all modules, which have to be done before this module + AddPreceedingModuleType(MAssembly::c_EnergyCalibration, true); + AddPreceedingModuleType(MAssembly::c_StripPairing, true); + AddPreceedingModuleType(MAssembly::c_TACCalibration, true); + AddPreceedingModuleType(MAssembly::c_DepthCorrection, true); + + // Set all types this modules handles + AddModuleType(MAssembly::c_TrappingCorrection); + + // Set all modules, which can follow this module + AddSucceedingModuleType(MAssembly::c_NoRestriction); + + // Set if this module has an options GUI + // If true, overwrite ShowOptionsGUI() with the call to the GUI! + m_HasOptionsGUI = true; + + // Allow the use of multiple threads and instances + m_AllowMultiThreading = true; + m_AllowMultipleInstances = false; + + +} + + +//////////////////////////////////////////////////////////////////////////////// + + +MModuleTrappingCorrection::~MModuleTrappingCorrection() +{ + // Delete this instance of MModuleTrappingCorrection +} + + +//////////////////////////////////////////////////////////////////////////////// + + +bool MModuleTrappingCorrection::Initialize() +{ + m_SimCCEFileIsLoaded = LoadSimCCEFile(m_SimCCEFileName); + if (m_SimCCEFileIsLoaded == false) { + return false; + } + + MSupervisor* S = MSupervisor::GetSupervisor(); + m_EnergyCalibration = (MModuleEnergyCalibration*) S->GetAvailableModuleByXmlTag("XmlTagEnergyCalibration"); + if (m_EnergyCalibration == nullptr) { + if (g_Verbosity >= c_Error) { + cout << "ERROR in MModuleTrappingCorrection::Initialize: couldn't resolve pointer to Energy Calibration Module... need access to this module for energy resolution lookup!" << endl; + } + return false; + } + + m_DepthCalibration = (MModuleDepthCalibration*) S->GetAvailableModuleByXmlTag("XmlTagDepthCalibration"); + if (m_DepthCalibration == nullptr) { + if (g_Verbosity >= c_Error) { + cout << "ERROR in MModuleTrappingCorrection::Initialize: couldn't resolve pointer to Depth Calibration Module... need access to this module for depth resolution lookup!" << endl; + } + return false; + } + + return MModule::Initialize(); +} + + +//////////////////////////////////////////////////////////////////////////////// + +void MModuleTrappingCorrection::CreateExpos() +{ + // Create all expos + + if (HasExpos() == true) return; + + // Set the histogram display using the new double-canvas GUI class + m_ExpoSpectrum = new MGUIExpoTrappingCorrection(this); + m_ExpoSpectrum->SetEnergyHistogramParameters(200, 0, 2000); + m_Expos.push_back(m_ExpoSpectrum); +} + + +///////////////////////////////////////////////////////////////////////////////// + + +bool MModuleTrappingCorrection::AnalyzeEvent(MReadOutAssembly* Event) +{ + if (Event->GetGuardRingVeto() || m_DetectorParamMap.empty()) { + return false; + } + + for (unsigned int i = 0; i < Event->GetNHits(); ++i) { + MHit* H = Event->GetHit(i); + + + int Grade = m_DepthCalibration->GetHitGrade(H); + if (Grade < 0 || Grade > 4) { + H->SetNoDepth(); + continue; + } + + // Local Z depth position (in cm) from the hit + double depth_val = H->GetLocalPosition().GetZ(); + + // Separate strip hits into LV and HV lists + vector LVStrips; + vector HVStrips; + + + for (unsigned int j = 0; j < H->GetNStripHits(); ++j) { + MStripHit* SH = H->GetStripHit(j); + if (SH->IsLowVoltageStrip()) LVStrips.push_back(SH); + else HVStrips.push_back(SH); + } + + // To account for charge sharing, get the dominant strip in each category and its energy fraction + double LVEnergyFraction = 0.0; + double HVEnergyFraction = 0.0; + MStripHit* LVSH = m_DepthCalibration->GetDominantStrip(LVStrips, LVEnergyFraction); + MStripHit* HVSH = m_DepthCalibration->GetDominantStrip(HVStrips, HVEnergyFraction); + + // --- Low Voltage (LV) Side --- + if (LVSH != nullptr) { + int detID = LVSH->GetDetectorID(); + // Iterate through detector param map to look up pre-loaded parameters for this detector + auto it = m_DetectorParamMap.find(detID); + + if (it != m_DetectorParamMap.end()) { + // Define a reference to the detector param struct + // Access the parameter data once the iterator is fixed + const DetectorTrappingData& detData = it->second; + + // Check depth bounds using this specific detector's CCE grid limits + double min_param_depth = std::min(detData.m_Depths.front(), detData.m_Depths.back()); + double max_param_depth = std::max(detData.m_Depths.front(), detData.m_Depths.back()); + bool is_depth_out_of_bounds = (depth_val < min_param_depth || depth_val > max_param_depth); + + double rawLVEnergy = LVSH->GetEnergy(); + + if (HasExpos() == true) { + m_ExpoSpectrum->AddEnergyInitial(rawLVEnergy, LVSH->IsNearestNeighbor(), LVSH->IsLowVoltageStrip()); + } + + double correctedLVEnergy = rawLVEnergy; + if (is_depth_out_of_bounds == false) { + correctedLVEnergy = GetSimBasedCorrectedEnergy(depth_val, rawLVEnergy, detData.m_Depths, detData.m_CCEs_LV_e, detData.m_CCEs_LV_h, detData.m_ParamB, detData.m_ParamC); + } + + LVSH->SetEnergy(correctedLVEnergy); + + if (HasExpos() == true) { + m_ExpoSpectrum->AddEnergyFinal(correctedLVEnergy, LVSH->IsNearestNeighbor(), LVSH->IsLowVoltageStrip()); + } + } else { + if (g_Verbosity >= c_Warning) { + cout << "WARNING [TrappingCorrection]: LV Strip Detector ID " << detID << " not found in map!" << endl; + } + } + } + + // --- High Voltage (HV) Side --- + if (HVSH != nullptr) { + int detID = HVSH->GetDetectorID(); + // Iterate through detector param map to look up pre-loaded parameters for this detector + auto it = m_DetectorParamMap.find(detID); + + + if (it != m_DetectorParamMap.end()) { + // Define a reference to the detector param struct + // Access the parameter data once the iterator is fixed + const DetectorTrappingData& detData = it->second; + + // Check depth bounds using this specific detector's CCE grid limits + double min_param_depth = std::min(detData.m_Depths.front(), detData.m_Depths.back()); + double max_param_depth = std::max(detData.m_Depths.front(), detData.m_Depths.back()); + bool is_depth_out_of_bounds = (depth_val < min_param_depth || depth_val > max_param_depth); + + + double rawHVEnergy = HVSH->GetEnergy(); + + if (HasExpos() == true) { + m_ExpoSpectrum->AddEnergyInitial(rawHVEnergy, HVSH->IsNearestNeighbor(), HVSH->IsLowVoltageStrip()); + } + double correctedHVEnergy = rawHVEnergy; + if (is_depth_out_of_bounds == false) { + correctedHVEnergy = GetSimBasedCorrectedEnergy( depth_val, rawHVEnergy, detData.m_Depths, detData.m_CCEs_HV_e, detData.m_CCEs_HV_h, detData.m_ParamB, detData.m_ParamC); + } + + HVSH->SetEnergy(correctedHVEnergy); + + if (HasExpos() == true) { + m_ExpoSpectrum->AddEnergyFinal(correctedHVEnergy, HVSH->IsNearestNeighbor(), HVSH->IsLowVoltageStrip()); + } + } else { + if (g_Verbosity >= c_Warning) { + cout << "WARNING [TrappingCorrection]: HV Strip Detector ID " << detID << " not found in map!" << endl; + + } + } + } + } + + Event->SetAnalysisProgress(MAssembly::c_TrappingCorrection); + return true; +} + +///////////////////////////////////////////////////////////////////////////////// + +void MModuleTrappingCorrection::Finalize() +{ + MModule::Finalize(); + + if (m_ExpoSpectrum == nullptr) { + if (g_Verbosity >= c_Error) { + cout << "ERROR in MModuleTrappingCorrection::Finalize: Expo plot spectrum is null." << endl; + } + return; + } + + if (g_Verbosity >= c_Info) { + cout << "INFO: Finalizing Trapping Correction Module..." << endl; + } + + // Retrieve both uncorrected and corrected histograms + TH1D* histLVInit = m_ExpoSpectrum->GetEnergyHistogramLVInitial(); + TH1D* histLVFinal = m_ExpoSpectrum->GetEnergyHistogramLVFinal(); + + TH1D* histHVInit = m_ExpoSpectrum->GetEnergyHistogramHVInitial(); + TH1D* histHVFinal = m_ExpoSpectrum->GetEnergyHistogramHVFinal(); + + // Helper lambda to calculate FWHM directly from the full continuous TF1 function curve + auto CalculateFunctionFWHM = [](TF1* func, double xMin, double xMax, double step = 0.01) -> double { + if (func == nullptr) return 0.0; + + double xPeak = func->GetMaximumX(xMin, xMax); + double yPeak = func->Eval(xPeak); + double halfMax = yPeak / 2.0; + + // Search left for half-max crossing point + double xLeft = xPeak; + for (double x = xPeak; x >= xMin; x -= step) { + if (func->Eval(x) <= halfMax) { + // Refine with linear interpolation between step bounds + double x1 = x, y1 = func->Eval(x1); + double x2 = x + step, y2 = func->Eval(x2); + xLeft = (y2 != y1) ? x1 + (halfMax - y1) * (x2 - x1) / (y2 - y1) : x1; + break; + } + } + + // Search right for half-max crossing point + double xRight = xPeak; + for (double x = xPeak; x <= xMax; x += step) { + if (func->Eval(x) <= halfMax) { + // Refine with linear interpolation between step bounds + double x1 = x - step, y1 = func->Eval(x1); + double x2 = x, y2 = func->Eval(x2); + xRight = (y2 != y1) ? x1 + (halfMax - y1) * (x2 - x1) / (y2 - y1) : x2; + break; + } + } + + return (xRight > xLeft) ? (xRight - xLeft) : 0.0; + }; + + /// Helper lambda to perform fit, output results + // returns : tuple + auto FitAndPrintSpectrum = [&](TH1D* hist, const string& titleLabel) -> std::tuple { + if (hist == nullptr || hist->GetEntries() <= 0) { + cout << "WARNING: " << titleLabel << " histogram is null or has 0 entries." << endl; + return std::make_tuple(0.0, 0.0, 0.0); + } + + TF1* fitFunc = GeneratePhotopeakFunction(); + fitFunc->SetParameter("Amplitude", hist->GetBinContent(hist->GetMaximumBin())); + hist->Fit(fitFunc, "RQ"); + + double mu = fitFunc->GetParameter("x0 (Mu)"); + double gaussFWHM = 2.35482 * fitFunc->GetParameter("Sigma Gauss"); + + // Evaluate full function FWHM over the fit window + double xMinFit = GetFitMinEnergy(); + double xMaxFit = GetFitMaxEnergy(); + fitFunc->GetRange(xMinFit, xMaxFit); + double fullFitFWHM = CalculateFunctionFWHM(fitFunc, xMinFit, xMaxFit); + + cout << "\n --- " << titleLabel << " ---" << endl; + cout << " Centroid (Mu) : " << mu << " keV" << endl; + cout << " Fitted Gaussian FWHM : " << gaussFWHM << " keV" << endl; + cout << " Full Fit Function FWHM: " << fullFitFWHM << " keV" << endl; + + delete fitFunc; + return std::make_tuple(mu, gaussFWHM, fullFitFWHM); + }; + + // --- EXECUTE FITS --- + std::tuple lv_raw = FitAndPrintSpectrum(histLVInit, "LV UNCORRECTED (RAW) SPECTRUM"); + std::tuple lv_corr = FitAndPrintSpectrum(histLVFinal, "LV CORRECTED SPECTRUM"); + + std::tuple hv_raw = FitAndPrintSpectrum(histHVInit, "HV UNCORRECTED (RAW) SPECTRUM"); + std::tuple hv_corr = FitAndPrintSpectrum(histHVFinal, "HV CORRECTED SPECTRUM"); + + if (g_Verbosity >= c_Info) { + // Helper lambda to print formatted delta comparison + auto PrintTrappingCorrectionSummary = [](const string& channelLabel, + const std::tuple& raw, + const std::tuple& corr) + { + double mu_raw = std::get<0>(raw); + double gauss_fwhm_raw = std::get<1>(raw); + double full_fwhm_raw = std::get<2>(raw); + + double mu_corr = std::get<0>(corr); + double gauss_fwhm_corr = std::get<1>(corr); + double full_fwhm_corr = std::get<2>(corr); + + // Calculate shifts and relative resolution changes + double lineShift = mu_corr - mu_raw; + double deltaGaussFWHM = std::sqrt(std::pow(gauss_fwhm_raw,2) - std::pow(gauss_fwhm_corr,2)); + double deltaFullFitFWHM = std::sqrt(std::pow(full_fwhm_raw,2) - std::pow(full_fwhm_corr, 2)); + + cout << "\n=======================================================" << endl; + cout << " TRAPPING CORRECTION SUMMARY: " << channelLabel << endl; + cout << "=======================================================" << endl; + cout << " Centroid Shift (Delta Mu) : " << lineShift << " keV (" << mu_raw << " -> " << mu_corr << ")" << endl; + cout << " Gaussian FWHM Change : " << deltaGaussFWHM << " keV (" << gauss_fwhm_raw << " -> " << gauss_fwhm_corr << ")" << endl; + cout << " Full Fit Function FWHM Change : " << deltaFullFitFWHM << " keV (" << full_fwhm_raw << " -> " << full_fwhm_corr << ")" << endl; + cout << "=======================================================\n" << endl; + }; + + // --- OUTPUT DELTA COMPARISONS --- + PrintTrappingCorrectionSummary("LOW VOLTAGE (LV) STRIPS", lv_raw, lv_corr); + PrintTrappingCorrectionSummary("HIGH VOLTAGE (HV) STRIPS", hv_raw, hv_corr); + } + + return; +} +///////////////////////////////////////////////////////////////////////////////// + + +bool MModuleTrappingCorrection::LoadSimCCEFile(MString FileName) +{ + MFile SimCCEFile; + if (SimCCEFile.Open(FileName) == false) { + if (g_Verbosity >= c_Error) { + cout << m_XmlTag << ": ERROR: Could not open CCE file " << FileName << endl; + } + return false; + } + + m_DetectorParamMap.clear(); + MString Line; + int currentDetID = -1; + std::set SeenTokens; // track detector IDs to avoid duplicates + + while (SimCCEFile.ReadLine(Line)) { + Line = Line.Strip(); + if (Line.IsEmpty() == true) continue; + + // Detect section header: "### " + if (Line.BeginsWith("###")) { + std::vector Tokens = Line.Tokenize(" "); + if (Tokens.size() >= 2) { + currentDetID = Tokens.back().Strip().ToInt(); + + MString TargetToken = Tokens[1]; + if (SeenTokens.find(TargetToken) != SeenTokens.end()) { + if (g_Verbosity >= c_Error) { + cout << "ERROR: Duplicate token '" << TargetToken << "'" << endl; + } + return false; + } + SeenTokens.insert(TargetToken); + } + continue; + } + + // Skip comment lines or lines before the first detector section + if (currentDetID < 0 || Line.BeginsWith('#')) continue; + + // Tokenize using only commas as delimiters + std::vector Tokens = Line.Tokenize(",", false); + DetectorTrappingData& det = m_DetectorParamMap[currentDetID]; + + // Read parameters (A_HV, A_LV, B, C) + if (det.m_Depths.empty() && Tokens.size() == 4) { + det.m_ParamA_HV = Tokens[0].Strip().ToDouble(); + det.m_ParamA_LV = Tokens[1].Strip().ToDouble(); + det.m_ParamB = Tokens[2].Strip().ToDouble(); + det.m_ParamC = Tokens[3].Strip().ToDouble(); + } + // Read CCE depth curves + else if (Tokens.size() == 5) { + det.m_Depths.push_back(Tokens[0].Strip().ToDouble()); + det.m_CCEs_HV_e.push_back(Tokens[1].Strip().ToDouble()); + det.m_CCEs_HV_h.push_back(Tokens[2].Strip().ToDouble()); + det.m_CCEs_LV_e.push_back(Tokens[3].Strip().ToDouble()); + det.m_CCEs_LV_h.push_back(Tokens[4].Strip().ToDouble()); + } + } + + SimCCEFile.Close(); + if (m_DetectorParamMap.empty() == true) { + if (g_Verbosity >= c_Error) { + cout << m_XmlTag << ": ERROR: Obtained an empty charge trapping parameter map when reading CCE file " << FileName << endl; + } + return false; + } + + return true; +} + +///////////////////////////////////////////////////////////////////////////////// + +double MModuleTrappingCorrection::GetSimBasedCorrectedEnergy(double depth_val, double uncorrected_energy, const std::vector& depths, const std::vector& sim_cce_sorted_e, const std::vector& sim_cce_sorted_h, double paramB, double paramC) +{ + if (sim_cce_sorted_e.empty() == true || sim_cce_sorted_h.empty() == true) { + return uncorrected_energy; + } + double cce_base_e = Interpolate(depth_val, depths, sim_cce_sorted_e); + double cce_base_h = Interpolate(depth_val, depths, sim_cce_sorted_h); + + // Evaluate the physical trapping function model using class global popt variables + double expected_centroid_scaled = (1.0 - paramB * (1.0 - cce_base_e)) * (1.0 - paramC * (1.0 - cce_base_h)); + + // Prevent division-by-zero or non-physical negative values + if (expected_centroid_scaled <= 0.0) { + return uncorrected_energy; + } + + return uncorrected_energy / expected_centroid_scaled; +} + +///////////////////////////////////////////////////////////////////////////////// + + +double MModuleTrappingCorrection::Interpolate(double x, const std::vector& xp, const std::vector& fp) { + // need an interpolation function to get continuous CCE values from the discrete simulation data + if (xp.empty()) return 0.0; + if (x <= xp.front()) return fp.front(); + if (x >= xp.back()) return fp.back(); + + // Find the first element which is greater than or equal to x + auto it = std::lower_bound(xp.begin(), xp.end(), x); + size_t idx = std::distance(xp.begin(), it); + + // Linear interpolation formula + double x0 = xp[idx - 1]; + double x1 = xp[idx]; + double y0 = fp[idx - 1]; + double y1 = fp[idx]; + + return y0 + (x - x0) * (y1 - y0) / (x1 - x0); +} + +///////////////////////////////////////////////////////////////////////////////// + + +void MModuleTrappingCorrection::ShowOptionsGUI() +{ + // Show the options GUI - or do nothing + MGUIOptionsTrappingCorrection* Options = new MGUIOptionsTrappingCorrection(this); + Options->Create(); + gClient->WaitForUnmap(Options); +} + + +///////////////////////////////////////////////////////////////////////////////// + + +bool MModuleTrappingCorrection::ReadXmlConfiguration(MXmlNode* Node) +{ + //! Read the configuration data from an XML node + + MXmlNode* SimCCEFileNameNode = Node->GetNode("SimCCEFileName"); + if (SimCCEFileNameNode != nullptr) { + m_SimCCEFileName = SimCCEFileNameNode->GetValue(); + } + + return true; +} + + +///////////////////////////////////////////////////////////////////////////////// + +MXmlNode* MModuleTrappingCorrection::CreateXmlConfiguration() +{ + //! Create an XML node tree from the configuration + + MXmlNode* Node = new MXmlNode(0,m_XmlTag); + new MXmlNode(Node, "SimCCEFileName", m_SimCCEFileName); + + return Node; +} + +////////////////////////////////////////////////////////////////////////////// + + +TF1* MModuleTrappingCorrection::GeneratePhotopeakFunction() +{ + // Component 1: Core Gaussian + // exp(-(x-x0)^2 / (2*sigma^2)) + MString gaussStr = "exp(-(x-[1])^2 / (2*[2]^2))"; + + // Component 2: Exponential Tail + Shelf + // BoverA * exp(gamma*(x-x0)) * 0.5 * erfc((x-x0)/(sigma*sigma_ratio*sqrt(2))) + MString expTailStr = "[3] * exp([4]*(x-[1])) * 0.5 * erfc((x-[1])/([2]*[5]*sqrt(2)))"; + + // Component 3: Linear Tail + Shelf + // BoverA * CoverB * (1 + D*(x-x0)) * 0.5 * erfc((x-x0)/(sigma*sigma_ratio*sqrt(2))) + MString linTailStr = "[3] * [6] * (1 + [7]*(x-[1])) * 0.5 * erfc((x-[1])/([2]*[5]*sqrt(2)))"; + + // Combine components with an overall normalization scaling factor [0] + MString fullFormula = "[0] * (" + gaussStr + " + " + expTailStr + " + " + linTailStr + ")"; + + // Get dynamic fit range centered on the photopeak + double fitMin = GetFitMinEnergy(); // mu - 20.0 + double fitMax = GetFitMaxEnergy(); // mu + 20.0 + double muInitial = GetPhotopeakMu(); + + // Construct the fit function with dynamic limits + TF1* PhotopeakFunction = new TF1("PhotopeakFunction", fullFormula.Data(), fitMin, fitMax); + + + // Set Parameter Names + PhotopeakFunction->SetParName(0, "Amplitude"); + PhotopeakFunction->SetParName(1, "x0 (Mu)"); + PhotopeakFunction->SetParName(2, "Sigma Gauss"); + PhotopeakFunction->SetParName(3, "BoverA"); + PhotopeakFunction->SetParName(4, "Gamma"); + PhotopeakFunction->SetParName(5, "Sigma Ratio"); + PhotopeakFunction->SetParName(6, "CoverB"); + PhotopeakFunction->SetParName(7, "D (Lin Slope)"); + + // Provide initial sensible guesses for a Cs137 photopeak + PhotopeakFunction->SetParameter("Amplitude", 1000); + PhotopeakFunction->SetParameter("x0 (Mu)", muInitial); + PhotopeakFunction->SetParameter("Sigma Gauss", 2.0); + PhotopeakFunction->SetParameter("BoverA", 0.05); + PhotopeakFunction->SetParameter("Gamma", 0.5); + PhotopeakFunction->SetParameter("Sigma Ratio", 0.85); + PhotopeakFunction->SetParameter("CoverB", 0.13); + PhotopeakFunction->SetParameter("D (Lin Slope)", 0.028); + + // Set boundary limits to stabilize convergence + PhotopeakFunction->SetParLimits(0, 1, 1e8); + PhotopeakFunction->SetParLimits(1, 645, 675); // Keeps peak centered around 662 keV + PhotopeakFunction->SetParLimits(2, 0.5, 10); // Prevents sigma from blowing up or hitting zero + PhotopeakFunction->SetParLimits(3, 0.0, 1.0); // Tail shouldn't be larger than the main peak + PhotopeakFunction->SetParLimits(4, 0.001, 2.0); // Standard range for exponential decay factor + PhotopeakFunction->SetParLimits(5, 0.1, 5.0); // Ratio of shelf width to peak width + PhotopeakFunction->SetParLimits(6, 0.0, 5.0); + PhotopeakFunction->SetParLimits(7, -1.0, 1.0); + + return PhotopeakFunction; +} + +// MModuleTrappingCorrection.cxx: the end... +////////////////////////////////////////////////////////////////////////////////