diff --git a/Cargo.lock b/Cargo.lock index 4bcceecb..d2599a22 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -4,18 +4,18 @@ version = 4 [[package]] name = "adler2" -version = "2.0.0" +version = "2.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "512761e0bb2578dd7380c6baaa0f4ce03e84f95e960231d1dec8bf4d7d6e2627" +checksum = "320119579fcad9c21884f5c4861d16174d0e06250625266f50fe6898340abefa" [[package]] name = "ahash" -version = "0.8.11" +version = "0.8.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e89da841a80418a9b391ebaea17f5c112ffaaa96f621d2c285b5174da76b9011" +checksum = "5a15f179cd60c4584b8a8c596927aadc462e27f2ca70c04e0071964a73ba7a75" dependencies = [ "cfg-if", - "getrandom 0.2.15", + "getrandom 0.3.4", "once_cell", "version_check", "zerocopy", @@ -23,9 +23,9 @@ dependencies = [ [[package]] name = "aho-corasick" -version = "1.1.3" +version = "1.1.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8e60d3430d3a69478ad0993f19238d2df97c507009a52b3c10addcd7f6bcb916" +checksum = "ddd31a130427c27518df266943a5308ed92d4b226cc639f5a8f1002816174301" dependencies = [ "memchr", ] @@ -36,12 +36,6 @@ version = "0.2.21" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "683d7910e743518b0e34f1186f92494becacb047c7b6bf616c96772180fef923" -[[package]] -name = "android-tzdata" -version = "0.1.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e999941b234f3131b00bc13c22d06e8c5ff726d1b6318ac7eb276997bbb4fef0" - [[package]] name = "android_system_properties" version = "0.1.5" @@ -51,6 +45,15 @@ dependencies = [ "libc", ] +[[package]] +name = "ar_archive_writer" +version = "0.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f0c269894b6fe5e9d7ada0cf69b5bf847ff35bc25fc271f08e1d080fce80339a" +dependencies = [ + "object", +] + [[package]] name = "argminmax" version = "0.6.3" @@ -62,9 +65,9 @@ dependencies = [ [[package]] name = "array-init-cursor" -version = "0.2.0" +version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bf7d0a018de4f6aa429b9d33d69edf69072b1c5b1cb8d3e4a5f7ef898fc3eb76" +checksum = "ed51fe0f224d1d4ea768be38c51f9f831dee9d05c163c11fba0b8c44387b1fc3" [[package]] name = "arrayref" @@ -114,9 +117,9 @@ dependencies = [ [[package]] name = "async-trait" -version = "0.1.85" +version = "0.1.89" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3f934833b4b7233644e5848f235df3f57ed8c80f1528a26c3dfa13d2147fa056" +checksum = "9035ad2d096bed7955a320ee7e2230574d28fd3c3a0f186cbea1ff3c7eed5dbb" dependencies = [ "proc-macro2", "quote", @@ -125,9 +128,12 @@ dependencies = [ [[package]] name = "atoi_simd" -version = "0.16.0" +version = "0.16.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4790f9e8961209112beb783d85449b508673cf4a6a419c8449b210743ac4dbe9" +checksum = "c2a49e05797ca52e312a0c658938b7d00693ef037799ef7187678f212d7684cf" +dependencies = [ + "debug_unsafe", +] [[package]] name = "atomic-waker" @@ -137,9 +143,9 @@ checksum = "1505bd5d3d116872e7271a6d4e16d81d0c8570876c8de68093a09ac269d8aac0" [[package]] name = "autocfg" -version = "1.4.0" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ace50bade8e6234aa140d9a2f552bbee1db4d353f69b8217bc503490fc1a9f26" +checksum = "c08606f8c3cbf4ce6ec8e28fb0014a2c086708fe954eaa885384a6165172e7e8" [[package]] name = "base64" @@ -164,11 +170,11 @@ dependencies = [ [[package]] name = "bitflags" -version = "2.7.0" +version = "2.10.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1be3f42a67d6d345ecd59f675f3f012d6974981560836e938c22b424b85ce1be" +checksum = "812e12b5285cc515a9c72a5c1d3b6d46a19dac5acfef5265968c166106e31dd3" dependencies = [ - "serde", + "serde_core", ] [[package]] @@ -186,9 +192,9 @@ dependencies = [ [[package]] name = "bumpalo" -version = "3.16.0" +version = "3.19.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "79296716171880943b8470b5f8d03aa55eb2e645a4874bdbb28adb49162e012c" +checksum = "5dd9dc738b7a8311c7ade152424974d8115f2cdad61e8dab8dac9f2362298510" [[package]] name = "bytecount" @@ -233,19 +239,20 @@ dependencies = [ [[package]] name = "castaway" -version = "0.2.3" +version = "0.2.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0abae9be0aaf9ea96a3b1b8b1b55c602ca751eba1b1500220cea4ecbafe7c0d5" +checksum = "dec551ab6e7578819132c713a93c022a05d60159dc86e7a7050223577484c55a" dependencies = [ "rustversion", ] [[package]] name = "cc" -version = "1.2.9" +version = "1.2.51" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c8293772165d9345bdaaa39b45b2109591e63fe5e6fbc23c6ff930a048aa310b" +checksum = "7a0aeaff4ff1a90589618835a598e545176939b97874f7abc7851caa0618f203" dependencies = [ + "find-msvc-tools", "jobserver", "libc", "shlex", @@ -253,9 +260,9 @@ dependencies = [ [[package]] name = "cfg-if" -version = "1.0.0" +version = "1.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" +checksum = "9330f8b2ff13f34540b44e946ef35111825727b38d33286ef986142615121801" [[package]] name = "cfg_aliases" @@ -265,49 +272,36 @@ checksum = "613afe47fcd5fac7ccf1db93babcb082c5994d996f20b8b159f2ad1658eb5724" [[package]] name = "chrono" -version = "0.4.39" +version = "0.4.42" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7e36cc9d416881d2e24f9a963be5fb1cd90966419ac844274161d10488b3e825" +checksum = "145052bdd345b87320e369255277e3fb5152762ad123a901ef5c262dd38fe8d2" dependencies = [ - "android-tzdata", "iana-time-zone", "js-sys", "num-traits", "serde", "wasm-bindgen", - "windows-targets 0.52.6", + "windows-link", ] [[package]] name = "chrono-tz" -version = "0.10.0" +version = "0.10.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cd6dd8046d00723a59a2f8c5f295c515b9bb9a331ee4f8f3d4dd49e428acd3b6" +checksum = "a6139a8597ed92cf816dfb33f5dd6cf0bb93a6adc938f11039f371bc5bcd26c3" dependencies = [ "chrono", - "chrono-tz-build", "phf", ] -[[package]] -name = "chrono-tz-build" -version = "0.4.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e94fea34d77a245229e7746bd2beb786cd2a896f306ff491fb8cecb3074b10a7" -dependencies = [ - "parse-zoneinfo", - "phf_codegen", -] - [[package]] name = "comfy-table" -version = "7.1.3" +version = "7.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "24f165e7b643266ea80cb858aed492ad9280e3e05ce24d4a99d7d7b889b6a4d9" +checksum = "b03b7db8e0b4b2fdad6c551e634134e99ec000e5c8c3b6856c65e8bbaded7a3b" dependencies = [ "crossterm", - "strum", - "strum_macros", + "unicode-segmentation", "unicode-width", ] @@ -411,14 +405,15 @@ checksum = "d0a5c400df2834b80a4c3327b3aad3a4c4cd4de0629063962b03235697506a28" [[package]] name = "crossterm" -version = "0.28.1" +version = "0.29.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "829d955a0bb380ef178a640b91779e3987da38c9aea133b20614cfed8cdea9c6" +checksum = "d8b9f2e4c67f833b660cdb0a3523065869fb35570177239812ed4c905aeff87b" dependencies = [ "bitflags", "crossterm_winapi", + "document-features", "parking_lot", - "rustix 0.38.43", + "rustix", "winapi", ] @@ -431,6 +426,12 @@ dependencies = [ "winapi", ] +[[package]] +name = "debug_unsafe" +version = "0.1.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "85d3cef41d236720ed453e102153a53e4cc3d2fde848c0078a50cf249e8e3e5b" + [[package]] name = "displaydoc" version = "0.2.5" @@ -442,11 +443,20 @@ dependencies = [ "syn", ] +[[package]] +name = "document-features" +version = "0.2.12" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d4b8a88685455ed29a21542a33abd9cb6510b6b129abadabdcef0f4c55bc8f61" +dependencies = [ + "litrs", +] + [[package]] name = "dyn-clone" -version = "1.0.17" +version = "1.0.20" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0d6ef0072f8a535281e4876be788938b528e9a1d43900b82c2569af7da799125" +checksum = "d0881ea181b1df73ff77ffaaf9c7544ecc11e82fba9b5f27b262a3c73a332555" [[package]] name = "either" @@ -468,25 +478,25 @@ dependencies = [ [[package]] name = "equivalent" -version = "1.0.1" +version = "1.0.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5443807d6dff69373d433ab9ef5378ad8df50ca6298caf15de6e52e24aaf54d5" +checksum = "877a4ace8713b0bcf2a4e7eec82529c029f1d0619886d18145fea96c3ffe5c0f" [[package]] name = "errno" -version = "0.3.10" +version = "0.3.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "33d852cb9b869c2a9b3df2f71a3074817f01e1844f839a144f5fcef059a4eb5d" +checksum = "39cab71617ae0d63f51a36d69f866391735b51691dbda63cf6f96d042b63efeb" dependencies = [ "libc", - "windows-sys 0.59.0", + "windows-sys 0.61.2", ] [[package]] name = "ethnum" -version = "1.5.0" +version = "1.5.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b90ca2580b73ab6a1f724b76ca11ab632df820fd6040c336200d2c1df7b3c82c" +checksum = "ca81e6b4777c89fd810c25a4be2b1bd93ea034fbe58e6a75216a34c6b82c539b" [[package]] name = "event-listener" @@ -521,6 +531,12 @@ version = "0.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f8eb564c5c7423d25c886fb561d1e4ee69f72354d16918afa32c08811f6b6a55" +[[package]] +name = "find-msvc-tools" +version = "0.1.6" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "645cbb3a84e60b7531617d5ae4e57f7e27308f6445f5abf653209ea76dec8dff" + [[package]] name = "flate2" version = "1.1.5" @@ -567,7 +583,7 @@ version = "0.13.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8640e34b88f7652208ce9e88b1a37a2ae95227d84abec377ccd3c5cfeb141ed4" dependencies = [ - "rustix 1.1.2", + "rustix", "windows-sys 0.59.0", ] @@ -662,42 +678,42 @@ dependencies = [ [[package]] name = "getrandom" -version = "0.2.15" +version = "0.2.16" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c4567c8db10ae91089c99af84c68c38da3ec2f087c3f82960bcdbf3656b6f4d7" +checksum = "335ff9f135e4384c8150d6f27c6daed433577f86b4750418338c01a1a2528592" dependencies = [ "cfg-if", "js-sys", "libc", - "wasi 0.11.0+wasi-snapshot-preview1", + "wasi", "wasm-bindgen", ] [[package]] name = "getrandom" -version = "0.3.2" +version = "0.3.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "73fea8450eea4bac3940448fb7ae50d91f034f941199fcd9d909a5a07aa455f0" +checksum = "899def5c37c4fd7b2664648c28120ecec138e4d395b459e5ca34f9cce2dd77fd" dependencies = [ "cfg-if", "js-sys", "libc", "r-efi", - "wasi 0.14.2+wasi-0.2.4", + "wasip2", "wasm-bindgen", ] [[package]] name = "glob" -version = "0.3.2" +version = "0.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a8d1add55171497b4705a648c6b583acafb01d58050a51727785f0b2c8e0a2b2" +checksum = "0cc23270f6e1808e30a928bdc84dea0b9b4136a8bc82338574f23baf47bbd280" [[package]] name = "h2" -version = "0.4.12" +version = "0.4.13" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f3c0b69cfcb4e1b9f1bf2f53f95f766e4661169728ec61cd3fe5a0166f2d1386" +checksum = "2f44da3a8150a6703ed5d34e164b875fd14c2cdab9af1252a9a1020bde2bdc54" dependencies = [ "atomic-waker", "bytes", @@ -736,9 +752,9 @@ dependencies = [ [[package]] name = "hashbrown" -version = "0.15.2" +version = "0.15.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bf151400ff0baff5465007dd2f3e717f3fe502074ca563069ce3a6629d07b289" +checksum = "9229cfe53dfd69f0609a49f65461bd93001ea1ef889cd5529dd176593f5338a1" dependencies = [ "allocator-api2", "equivalent", @@ -747,6 +763,12 @@ dependencies = [ "serde", ] +[[package]] +name = "hashbrown" +version = "0.16.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "841d1cc9bed7f9236f321df977030373f4a4163ae1a7dbfe1a51a2c1a51d9100" + [[package]] name = "heck" version = "0.5.0" @@ -761,11 +783,11 @@ checksum = "7f24254aa9a54b5c858eaee2f5bccdb46aaf0e486a595ed5fd8f86ba55232a70" [[package]] name = "home" -version = "0.5.11" +version = "0.5.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "589533453244b0995c858700322199b2becb13b627df2851f64a2775d024abcf" +checksum = "cc627f471c528ff0c4a49e1d5e60450c8f6461dd6d10ba9dcd3a61d3dff7728d" dependencies = [ - "windows-sys 0.59.0", + "windows-sys 0.61.2", ] [[package]] @@ -878,16 +900,17 @@ dependencies = [ [[package]] name = "iana-time-zone" -version = "0.1.61" +version = "0.1.64" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "235e081f3925a06703c2d0117ea8b91f042756fd6e7a6e5d901e8ca1a996b220" +checksum = "33e57f83510bb73707521ebaffa789ec8caf86f9657cad665b092b581d40e9fb" dependencies = [ "android_system_properties", "core-foundation-sys", "iana-time-zone-haiku", "js-sys", + "log", "wasm-bindgen", - "windows-core 0.52.0", + "windows-core 0.62.2", ] [[package]] @@ -1003,20 +1026,24 @@ dependencies = [ [[package]] name = "indexmap" -version = "2.7.0" +version = "2.12.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "62f822373a4fe84d4bb149bf54e584a7f4abec90e072ed49cda0edea5b95471f" +checksum = "0ad4bb2b565bca0645f4d68c5c9af97fba094e9791da685bf83cb5f3ce74acf2" dependencies = [ "equivalent", - "hashbrown 0.15.2", + "hashbrown 0.16.1", "serde", + "serde_core", ] [[package]] name = "indoc" -version = "2.0.5" +version = "2.0.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b248f5224d1d606005e02c97f5aa4e88eeb230488bcc03bc9ca4d7991399f2b5" +checksum = "79cf5c93f93228cf8efb3ba362535fb11199ac548a09ce117c9b1adc3030d706" +dependencies = [ + "rustversion", +] [[package]] name = "ipnet" @@ -1026,9 +1053,9 @@ checksum = "469fb0b9cefa57e3ef31275ee7cacb78f2fdca44e4765491884a2b119d4eb130" [[package]] name = "iri-string" -version = "0.7.9" +version = "0.7.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4f867b9d1d896b67beb18518eda36fdb77a32ea590de864f1325b294a6d14397" +checksum = "c91338f0783edbd6195decb37bae672fd3b165faffb89bf7b9e6942f8b1a731a" dependencies = [ "memchr", "serde", @@ -1054,24 +1081,25 @@ dependencies = [ [[package]] name = "itoa" -version = "1.0.14" +version = "1.0.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d75a2a4b1b190afb6f5425f10f6a8f959d2ea0b9c2b1d79553551850539e4674" +checksum = "92ecc6618181def0457392ccd0ee51198e065e016d1d527a7ac1b6dc7c1f09d2" [[package]] name = "jobserver" -version = "0.1.32" +version = "0.1.34" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "48d1dbcbbeb6a7fec7e059840aa538bd62aaccf972c7346c4d9d2059312853d0" +checksum = "9afb3de4395d6b3e67a780b6de64b51c978ecf11cb9a462c66be7d4ca9039d33" dependencies = [ + "getrandom 0.3.4", "libc", ] [[package]] name = "js-sys" -version = "0.3.77" +version = "0.3.83" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1cfaf33c695fc6e08064efbc1f72ec937429614f25eef83af942d0e227c3a28f" +checksum = "464a3709c7f55f1f721e5389aa6ea4e3bc6aba669353300af094b29ffbdde1d8" dependencies = [ "once_cell", "wasm-bindgen", @@ -1079,21 +1107,15 @@ dependencies = [ [[package]] name = "libc" -version = "0.2.178" +version = "0.2.179" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "37c93d8daa9d8a012fd8ab92f088405fb202ea0b6ab73ee2482ae66af4f42091" +checksum = "c5a2d376baa530d1238d133232d15e239abad80d05838b4b59354e5268af431f" [[package]] name = "libm" -version = "0.2.11" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8355be11b20d696c8f18f6cc018c4e372165b1fa8126cef092399c9951984ffa" - -[[package]] -name = "linux-raw-sys" -version = "0.4.15" +version = "0.2.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d26c52dbd32dccf2d10cac7725f8eae5296885fb5703b261f7d0a0739ec807ab" +checksum = "f9fbbcab51052fe104eb5e5d351cf728d30a5be1fe14d9be8a3b097481fb97de" [[package]] name = "linux-raw-sys" @@ -1107,21 +1129,26 @@ version = "0.8.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6373607a59f0be73a39b6fe456b8192fcc3585f602af20751600e974dd455e77" +[[package]] +name = "litrs" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "11d3d7f243d5c5a8b9bb5d6dd2b1602c0cb0b9db1621bafc7ed66e35ff9fe092" + [[package]] name = "lock_api" -version = "0.4.12" +version = "0.4.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "07af8b9cdd281b7915f413fa73f29ebd5d55d0d3f0155584dade1ff18cea1b17" +checksum = "224399e74b87b5f3557511d98dff8b14089b3dadafcab6bb93eab67d3aace965" dependencies = [ - "autocfg", "scopeguard", ] [[package]] name = "log" -version = "0.4.25" +version = "0.4.29" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "04cbf5b083de1c7e0222a7a51dbfdba1cbe1c6ab0b15e29fff3f6c077fd9cd9f" +checksum = "5e5032e24019045c762d3c0f28f5b6b8bbf38563a65908389bf7978758920897" [[package]] name = "lru-slab" @@ -1174,7 +1201,7 @@ dependencies = [ "itertools 0.13.0", "medmodels-utils", "polars", - "rand 0.9.1", + "rand 0.9.2", "rayon", "roaring", "ron", @@ -1182,6 +1209,16 @@ dependencies = [ "tabled", ] +[[package]] +name = "medmodels-pyo3-interop" +version = "0.4.6" +dependencies = [ + "bincode", + "medmodels", + "medmodels-python", + "pyo3", +] + [[package]] name = "medmodels-python" version = "0.4.6" @@ -1206,15 +1243,15 @@ dependencies = [ [[package]] name = "memchr" -version = "2.7.4" +version = "2.7.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "78ca9ab1a0babb1e7d5695e3530886289c18cf2f87ec19a575a0abdce112e3a3" +checksum = "f52b00d39961fc5b2736ea853c9cc86238e165017a493d1d5c8eac6bdc4cc273" [[package]] name = "memmap2" -version = "0.9.5" +version = "0.9.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fd3f7eed9d3848f8b98834af67102b720745c4ec028fcd0aa0239277e7de374f" +checksum = "744133e4a0e0a658e1374cf3bf8e415c4052a15a111acd372764c55b4177d490" dependencies = [ "libc", ] @@ -1240,13 +1277,13 @@ dependencies = [ [[package]] name = "mio" -version = "1.0.3" +version = "1.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2886843bf800fba2e3377cff24abf6379b4c4d5c6681eaf9ea5b0d15090450bd" +checksum = "a69bcab0ad47271a0234d9422b131806bf3968021e5dc9328caf2d4cd58557fc" dependencies = [ "libc", - "wasi 0.11.0+wasi-snapshot-preview1", - "windows-sys 0.52.0", + "wasi", + "windows-sys 0.61.2", ] [[package]] @@ -1275,9 +1312,9 @@ dependencies = [ [[package]] name = "ntapi" -version = "0.4.1" +version = "0.4.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e8a3895c6391c39d7fe7ebc444a87eb2991b2a0bc718fdabd071eec617fc68e4" +checksum = "c70f219e21142367c70c0b30c6a9e3a14d55b4d12a204d897fbec83a0363f081" dependencies = [ "winapi", ] @@ -1326,6 +1363,15 @@ dependencies = [ "rustc-hash", ] +[[package]] +name = "object" +version = "0.32.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a6a622008b6e321afc04970976f62ee297fdbaa6f95318ca343e3eebb9648441" +dependencies = [ + "memchr", +] + [[package]] name = "object_store" version = "0.12.4" @@ -1346,13 +1392,13 @@ dependencies = [ "parking_lot", "percent-encoding", "quick-xml", - "rand 0.9.1", + "rand 0.9.2", "reqwest", "ring", "serde", "serde_json", "serde_urlencoded", - "thiserror 2.0.11", + "thiserror 2.0.17", "tokio", "tracing", "url", @@ -1363,15 +1409,15 @@ dependencies = [ [[package]] name = "once_cell" -version = "1.20.2" +version = "1.21.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1261fe7e33c73b354eab43b1273a57c8f967d0391e80353e51f764ac02cf6775" +checksum = "42f5e15c9953c5e4ccceeb2e7382a716482c34515315f7b03532b8b4e8393d2d" [[package]] name = "openssl-probe" -version = "0.1.6" +version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d05e27ee213611ffe7d6348b942e8f942b37114c00cc03cec254295a4a17852e" +checksum = "9f50d9b3dabb09ecd771ad0aa242ca6894994c130308ca3d7684634df8037391" [[package]] name = "papergrid" @@ -1392,9 +1438,9 @@ checksum = "f38d5652c16fde515bb1ecef450ab0f6a219d619a7274976324d5e377f7dceba" [[package]] name = "parking_lot" -version = "0.12.3" +version = "0.12.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f1bf18183cf54e8d6059647fc3063646a1801cf30896933ec2311622cc4b9a27" +checksum = "93857453250e3077bd71ff98b6a65ea6621a19bb0f559a85248955ac12c45a1a" dependencies = [ "lock_api", "parking_lot_core", @@ -1402,72 +1448,37 @@ dependencies = [ [[package]] name = "parking_lot_core" -version = "0.9.10" +version = "0.9.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1e401f977ab385c9e4e3ab30627d6f26d00e2c73eef317493c4ec6d468726cf8" +checksum = "2621685985a2ebf1c516881c026032ac7deafcda1a2c9b7850dc81e3dfcb64c1" dependencies = [ "cfg-if", "libc", "redox_syscall", "smallvec", - "windows-targets 0.52.6", -] - -[[package]] -name = "parse-zoneinfo" -version = "0.3.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1f2a05b18d44e2957b88f96ba460715e295bc1d7510468a2f3d3b44535d26c24" -dependencies = [ - "regex", + "windows-link", ] -[[package]] -name = "paste" -version = "1.0.15" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "57c0d7b74b563b49d38dae00a0c37d4d6de9b432382b2892f0574ddcae73fd0a" - [[package]] name = "percent-encoding" -version = "2.3.1" +version = "2.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e3148f5046208a5d56bcfc03053e3ca6334e51da8dfb19b6cdc8b306fae3283e" +checksum = "9b4f627cb1b25917193a259e49bdad08f671f8d9708acfd5fe0a8c1455d87220" [[package]] name = "phf" -version = "0.11.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1fd6780a80ae0c52cc120a26a1a42c1ae51b247a253e4e06113d23d2c2edd078" -dependencies = [ - "phf_shared", -] - -[[package]] -name = "phf_codegen" -version = "0.11.3" +version = "0.12.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "aef8048c789fa5e851558d709946d6d79a8ff88c0440c587967f8e94bfb1216a" +checksum = "913273894cec178f401a31ec4b656318d95473527be05c0752cc41cdc32be8b7" dependencies = [ - "phf_generator", "phf_shared", ] -[[package]] -name = "phf_generator" -version = "0.11.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3c80231409c20246a13fddb31776fb942c38553c51e871f8cbd687a4cfb5843d" -dependencies = [ - "phf_shared", - "rand 0.8.5", -] - [[package]] name = "phf_shared" -version = "0.11.3" +version = "0.12.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "67eabc2ef2a60eb7faa00097bd1ffdb5bd28e62bf39990626a582201b7a754e5" +checksum = "06005508882fb681fd97892ecff4b7fd0fee13ef1aa569f8695dae7ab9099981" dependencies = [ "siphasher", ] @@ -1486,9 +1497,9 @@ checksum = "8b870d8c151b6f2fb93e84a13146138f05d02ed11c7e7c54f8826aaaf7c9f184" [[package]] name = "pkg-config" -version = "0.3.31" +version = "0.3.32" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "953ec861398dccce10c670dfeaf3ec4911ca479e9c02154b3a215178c5f566f2" +checksum = "7edddbd0b52d732b21ad9a5fab5c704c14cd949e5e9a1ec5929a24fded1b904c" [[package]] name = "planus" @@ -1505,7 +1516,7 @@ version = "0.48.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c0c10a02dc15223de108e0625bf152efb8dc3b181c5916b5ee335e40dcda735a" dependencies = [ - "getrandom 0.2.15", + "getrandom 0.2.16", "polars-arrow", "polars-core", "polars-error", @@ -1534,8 +1545,8 @@ dependencies = [ "dyn-clone", "either", "ethnum", - "getrandom 0.2.15", - "hashbrown 0.15.2", + "getrandom 0.2.16", + "hashbrown 0.15.5", "itoa", "lz4", "num-traits", @@ -1572,7 +1583,7 @@ dependencies = [ "chrono", "either", "fast-float2", - "hashbrown 0.15.2", + "hashbrown 0.15.5", "itoa", "num-traits", "polars-arrow", @@ -1600,7 +1611,7 @@ dependencies = [ "comfy-table", "either", "hashbrown 0.14.5", - "hashbrown 0.15.2", + "hashbrown 0.15.5", "indexmap", "itoa", "num-traits", @@ -1642,7 +1653,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fc0f1673599bee079c94d7d7e7e0a31818c7c88060dcf6ec82691a99e1eb5cf9" dependencies = [ "bitflags", - "hashbrown 0.15.2", + "hashbrown 0.15.5", "num-traits", "polars-arrow", "polars-compute", @@ -1673,7 +1684,7 @@ dependencies = [ "fs4", "futures", "glob", - "hashbrown 0.15.2", + "hashbrown 0.15.5", "home", "itoa", "memchr", @@ -1709,7 +1720,7 @@ checksum = "f8b0fdc69f8a20441b4fbc4843d643d0fa12fcef1b6b27608087ef544c5407f0" dependencies = [ "chrono", "fallible-streaming-iterator", - "hashbrown 0.15.2", + "hashbrown 0.15.5", "indexmap", "itoa", "num-traits", @@ -1780,7 +1791,7 @@ dependencies = [ "chrono", "chrono-tz", "either", - "hashbrown 0.15.2", + "hashbrown 0.15.5", "hex", "indexmap", "libm", @@ -1812,7 +1823,7 @@ dependencies = [ "bytemuck", "ethnum", "futures", - "hashbrown 0.15.2", + "hashbrown 0.15.5", "num-traits", "polars-arrow", "polars-compute", @@ -1843,7 +1854,7 @@ dependencies = [ "crossbeam-channel", "crossbeam-queue", "enum_dispatch", - "hashbrown 0.15.2", + "hashbrown 0.15.5", "num-traits", "polars-arrow", "polars-compute", @@ -1871,7 +1882,7 @@ dependencies = [ "chrono", "chrono-tz", "either", - "hashbrown 0.15.2", + "hashbrown 0.15.5", "memmap2", "num-traits", "percent-encoding", @@ -2009,7 +2020,7 @@ dependencies = [ "compact_str", "flate2", "foldhash", - "hashbrown 0.15.2", + "hashbrown 0.15.5", "indexmap", "libc", "memmap2", @@ -2031,9 +2042,9 @@ dependencies = [ [[package]] name = "portable-atomic" -version = "1.10.0" +version = "1.13.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "280dc24453071f1b63954171985a0b0d30058d287960968b9b2aca264c8d4ee6" +checksum = "f89776e4d69bb58bc6993e99ffa1d11f228b839984854c7daeb5d37f87cbe950" [[package]] name = "portable-atomic-util" @@ -2055,9 +2066,9 @@ dependencies = [ [[package]] name = "ppv-lite86" -version = "0.2.20" +version = "0.2.21" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "77957b295656769bb8ad2b6a6b09d897d94f05c41b069aede1fcdaa675eaea04" +checksum = "85eae3c4ed2f50dcfe72643da4befc30deadb458a9b590d720cde2f2b1e97da9" dependencies = [ "zerocopy", ] @@ -2086,19 +2097,20 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.93" +version = "1.0.105" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "60946a68e5f9d28b0dc1c21bb8a97ee7d018a8b322fa57838ba31cc878e22d99" +checksum = "535d180e0ecab6268a3e718bb9fd44db66bbbc256257165fc699dadf70d16fe7" dependencies = [ "unicode-ident", ] [[package]] name = "psm" -version = "0.1.24" +version = "0.1.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "200b9ff220857e53e184257720a14553b2f4aa02577d2ed9842d45d4b9654810" +checksum = "d11f2fedc3b7dafdc2851bc52f277377c5473d378859be234bc7ebb593144d01" dependencies = [ + "ar_archive_writer", "cc", ] @@ -2214,7 +2226,7 @@ dependencies = [ "rustc-hash", "rustls", "socket2", - "thiserror 2.0.11", + "thiserror 2.0.17", "tokio", "tracing", "web-time", @@ -2227,15 +2239,15 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f1906b49b0c3bc04b5fe5d86a77925ae6524a19b816ae38ce1e426255f1d8a31" dependencies = [ "bytes", - "getrandom 0.3.2", + "getrandom 0.3.4", "lru-slab", - "rand 0.9.1", + "rand 0.9.2", "ring", "rustc-hash", "rustls", "rustls-pki-types", "slab", - "thiserror 2.0.11", + "thiserror 2.0.17", "tinyvec", "tracing", "web-time", @@ -2257,18 +2269,18 @@ dependencies = [ [[package]] name = "quote" -version = "1.0.38" +version = "1.0.43" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0e4dccaaaf89514f546c693ddc140f729f958c247918a13380cccc6078391acc" +checksum = "dc74d9a594b72ae6656596548f56f667211f8a97b3d4c3d467150794690dc40a" dependencies = [ "proc-macro2", ] [[package]] name = "r-efi" -version = "5.2.0" +version = "5.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "74765f6d916ee2faa39bc8e68e4f3ed8949b48cccdac59983d287a7cb71ce9c5" +checksum = "69cdb34c158ceb288df11e18b4bd39de994f6657d83847bdffdbd7f346754b0f" [[package]] name = "rand" @@ -2283,9 +2295,9 @@ dependencies = [ [[package]] name = "rand" -version = "0.9.1" +version = "0.9.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9fbfd9d094a40bf3ae768db9361049ace4c0e04a4fd6b359518bd7b73a73dd97" +checksum = "6db2770f06117d490610c7488547d543617b21bfa07796d7a12f6f1bd53850d1" dependencies = [ "rand_chacha 0.9.0", "rand_core 0.9.3", @@ -2317,7 +2329,7 @@ version = "0.6.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ec0be4795e2f6a28069bec0b5ff3e2ac9bafc99e6a9a7dc3547996c5c816922c" dependencies = [ - "getrandom 0.2.15", + "getrandom 0.2.16", ] [[package]] @@ -2326,7 +2338,7 @@ version = "0.9.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "99d9a13982dcf210057a8a78572b2217b667c3beacbf3a0d8b454f6f82837d38" dependencies = [ - "getrandom 0.3.2", + "getrandom 0.3.4", ] [[package]] @@ -2341,9 +2353,9 @@ dependencies = [ [[package]] name = "raw-cpuid" -version = "11.3.0" +version = "11.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c6928fa44c097620b706542d428957635951bade7143269085389d42c8a4927e" +checksum = "498cd0dc59d73224351ee52a95fee0f1a617a2eae0e7d9d720cc622c73a54186" dependencies = [ "bitflags", ] @@ -2356,9 +2368,9 @@ checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3" [[package]] name = "rayon" -version = "1.10.0" +version = "1.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b418a60154510ca1a002a752ca9714984e21e4241e804d32555251faf8b78ffa" +checksum = "368f01d005bf8fd9b1206fb6fa653e6c4a81ceb1466406b81792d87c5677a58f" dependencies = [ "either", "rayon-core", @@ -2366,9 +2378,9 @@ dependencies = [ [[package]] name = "rayon-core" -version = "1.12.1" +version = "1.13.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1465873a3dfdaa8ae7cb14b4383657caab0b3e8a0aa9ae8e04b044854c8dfce2" +checksum = "22e18b0f0062d30d4230b2e85ff77fdfe4326feb054b9783a3460d8435c8ab91" dependencies = [ "crossbeam-deque", "crossbeam-utils", @@ -2396,27 +2408,27 @@ dependencies = [ [[package]] name = "redox_syscall" -version = "0.5.8" +version = "0.5.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "03a862b389f93e68874fbf580b9de08dd02facb9a788ebadaf4a3fd33cf58834" +checksum = "ed2bf2547551a7053d6fdfafda3f938979645c44812fbfcda098faae3f1a362d" dependencies = [ "bitflags", ] [[package]] name = "ref-cast" -version = "1.0.23" +version = "1.0.25" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ccf0a6f84d5f1d581da8b41b47ec8600871962f2a528115b542b362d4b744931" +checksum = "f354300ae66f76f1c85c5f84693f0ce81d747e2c3f21a45fef496d89c960bf7d" dependencies = [ "ref-cast-impl", ] [[package]] name = "ref-cast-impl" -version = "1.0.23" +version = "1.0.25" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bcc303e793d3734489387d205e9b186fac9c6cfacedd98cbb2e8a5943595f3e6" +checksum = "b7186006dcb21920990093f30e3dea63b7d6e977bf1256be20c3563a5db070da" dependencies = [ "proc-macro2", "quote", @@ -2425,9 +2437,9 @@ dependencies = [ [[package]] name = "regex" -version = "1.11.1" +version = "1.12.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b544ef1b4eac5dc2db33ea63606ae9ffcfac26c1416a2806ae0bf5f56b201191" +checksum = "843bc0191f75f3e22651ae5f1e72939ab2f72a4bc30fa80a066bd66edefc24d4" dependencies = [ "aho-corasick", "memchr", @@ -2437,9 +2449,9 @@ dependencies = [ [[package]] name = "regex-automata" -version = "0.4.9" +version = "0.4.13" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "809e8dc61f6de73b46c85f4c96486310fe304c434cfa43669d7b40f711150908" +checksum = "5276caf25ac86c8d810222b3dbb938e512c55c6831a10f3e6ed1c93b84041f1c" dependencies = [ "aho-corasick", "memchr", @@ -2448,15 +2460,15 @@ dependencies = [ [[package]] name = "regex-syntax" -version = "0.8.5" +version = "0.8.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2b15c43186be67a4fd63bee50d0303afffcef381492ebe2c5d87f324e1b8815c" +checksum = "7a2d987857b319362043e95f5353c0535c1f58eec5336fdfcf626430af7def58" [[package]] name = "reqwest" -version = "0.12.25" +version = "0.12.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b6eff9328d40131d43bd911d42d79eb6a47312002a4daefc9e37f17e74a7701a" +checksum = "eddd3ca559203180a307f12d114c268abf583f59b03cb906fd0b3ff8646c1147" dependencies = [ "base64 0.22.1", "bytes", @@ -2502,7 +2514,7 @@ checksum = "a4689e6c2294d81e88dc6261c768b63bc4fcdb852be6d1352498b114f61383b7" dependencies = [ "cc", "cfg-if", - "getrandom 0.2.15", + "getrandom 0.2.16", "libc", "untrusted", "windows-sys 0.52.0", @@ -2510,31 +2522,28 @@ dependencies = [ [[package]] name = "rmp" -version = "0.8.14" +version = "0.8.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "228ed7c16fa39782c3b3468e974aec2795e9089153cd08ee2e9aefb3613334c4" +checksum = "4ba8be72d372b2c9b35542551678538b562e7cf86c3315773cae48dfbfe7790c" dependencies = [ - "byteorder", "num-traits", - "paste", ] [[package]] name = "rmp-serde" -version = "1.3.0" +version = "1.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "52e599a477cf9840e92f2cde9a7189e67b42c57532749bf90aea6ec10facd4db" +checksum = "72f81bee8c8ef9b577d1681a70ebbc962c232461e397b22c208c43c04b67a155" dependencies = [ - "byteorder", "rmp", "serde", ] [[package]] name = "roaring" -version = "0.10.10" +version = "0.10.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a652edd001c53df0b3f96a36a8dc93fce6866988efc16808235653c6bcac8bf2" +checksum = "19e8d2cfa184d94d0726d650a9f4a1be7f9b76ac9fdb954219878dc00c1c1e7b" dependencies = [ "bytemuck", "byteorder", @@ -2560,35 +2569,22 @@ checksum = "357703d41365b4b27c590e3ed91eabb1b663f07c4c084095e60cbed4362dff0d" [[package]] name = "rustix" -version = "0.38.43" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a78891ee6bf2340288408954ac787aa063d8e8817e9f53abb37c695c6d834ef6" -dependencies = [ - "bitflags", - "errno", - "libc", - "linux-raw-sys 0.4.15", - "windows-sys 0.59.0", -] - -[[package]] -name = "rustix" -version = "1.1.2" +version = "1.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cd15f8a2c5551a84d56efdc1cd049089e409ac19a3072d5037a17fd70719ff3e" +checksum = "146c9e247ccc180c1f61615433868c99f3de3ae256a30a43b49f67c2d9171f34" dependencies = [ "bitflags", "errno", "libc", - "linux-raw-sys 0.11.0", + "linux-raw-sys", "windows-sys 0.61.2", ] [[package]] name = "rustls" -version = "0.23.35" +version = "0.23.36" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "533f54bc6a7d4f647e46ad909549eda97bf5afc1585190ef692b4286b198bd8f" +checksum = "c665f33d38cea657d9614f766881e4d510e0eda4239891eea56b4cadcf01801b" dependencies = [ "once_cell", "ring", @@ -2600,9 +2596,9 @@ dependencies = [ [[package]] name = "rustls-native-certs" -version = "0.8.2" +version = "0.8.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9980d917ebb0c0536119ba501e90834767bffc3d60641457fd84a1f3fd337923" +checksum = "612460d5f7bea540c490b2b6395d8e34a953e52b491accd6c86c8164c5932a63" dependencies = [ "openssl-probe", "rustls-pki-types", @@ -2612,9 +2608,9 @@ dependencies = [ [[package]] name = "rustls-pki-types" -version = "1.13.1" +version = "1.13.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "708c0f9d5f54ba0272468c1d306a52c495b31fa155e91bc25371e6df7996908c" +checksum = "21e6f2ab2928ca4291b86736a8bd920a277a399bba1589409d72154ff87c1282" dependencies = [ "web-time", "zeroize", @@ -2633,15 +2629,15 @@ dependencies = [ [[package]] name = "rustversion" -version = "1.0.19" +version = "1.0.22" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f7c45b9784283f1b2e7fb61b42047c2fd678ef0960d4f6f1eba131594cc369d4" +checksum = "b39cdef0fa800fc44525c84ccb54a029961a8215f9619753635a9c0d2538d46d" [[package]] name = "ryu" -version = "1.0.18" +version = "1.0.22" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f3cb5ba0dc43242ce17de99c180e96db90b235b8a9fdc9543c96d2209116bd9f" +checksum = "a50f4cf475b65d88e057964e0e9bb1f0aa9bbb2036dc65c64596b42932536984" [[package]] name = "same-file" @@ -2732,14 +2728,15 @@ dependencies = [ [[package]] name = "serde_json" -version = "1.0.135" +version = "1.0.148" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2b0d7ba2887406110130a978386c4e1befb98c674b4fba677954e4db976630d9" +checksum = "3084b546a1dd6289475996f182a22aba973866ea8e8b02c51d9f46b1336a22da" dependencies = [ "itoa", "memchr", - "ryu", "serde", + "serde_core", + "zmij", ] [[package]] @@ -2772,10 +2769,11 @@ dependencies = [ [[package]] name = "signal-hook-registry" -version = "1.4.7" +version = "1.4.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7664a098b8e616bdfcc2dc0e9ac44eb231eedf41db4e9fe95d8d32ec728dedad" +checksum = "c4db69cba1110affc0e9f7bcd48bbf87b3f4fc7c61fc9155afd4c469eb3d6c1b" dependencies = [ + "errno", "libc", ] @@ -2792,7 +2790,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "aa2bcf6c6e164e81bc7a5d49fc6988b3d515d9e8c07457d7b74ffb9324b9cd40" dependencies = [ "ahash", - "getrandom 0.2.15", + "getrandom 0.2.16", "halfbrown", "once_cell", "ref-cast", @@ -2825,27 +2823,24 @@ dependencies = [ [[package]] name = "slab" -version = "0.4.9" +version = "0.4.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8f92a496fb766b417c996b9c5e57daf2f7ad3b0bebe1ccfca4856390e3d3bb67" -dependencies = [ - "autocfg", -] +checksum = "7a2ae44ef20feb57a68b23d846850f861394c2e02dc425a50098ae8c90267589" [[package]] name = "slotmap" -version = "1.0.7" +version = "1.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dbff4acf519f630b3a3ddcfaea6c06b42174d9a44bc70c620e9ed1649d58b82a" +checksum = "bdd58c3c93c3d278ca835519292445cb4b0d4dc59ccfdf7ceadaab3f8aeb4038" dependencies = [ "version_check", ] [[package]] name = "smallvec" -version = "1.13.2" +version = "1.15.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3c5e1a9a646d36c3599cd173a41282daf47c44583ad367b8e6837255952e5c67" +checksum = "67b1b7a3b5fe4f1376887184045fcf45c69e92af734b7aaddc05fb777b6fbd03" [[package]] name = "socket2" @@ -2874,9 +2869,9 @@ checksum = "6ce2be8dc25455e1f91df71bfa12ad37d7af1092ae736f3a6cd0e37bc7810596" [[package]] name = "stacker" -version = "0.1.17" +version = "0.1.22" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "799c883d55abdb5e98af1a7b3f23b9b6de8ecada0ecac058672d7635eb48ca7b" +checksum = "e1f8b29fb42aafcea4edeeb6b2f2d7ecd0d969c48b4cf0d2e64aafc471dd6e59" dependencies = [ "cc", "cfg-if", @@ -2912,12 +2907,6 @@ version = "0.2.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fe895eb47f22e2ddd4dabc02bce419d2e643c8e3b585c78158b349195bc24d82" -[[package]] -name = "strum" -version = "0.26.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8fec0f0aef304996cf250b31b5a10dee7980c85da9d759361292b8bca5a18f06" - [[package]] name = "strum_macros" version = "0.26.4" @@ -2939,9 +2928,9 @@ checksum = "13c2bddecc57b384dee18652358fb23172facb8a2c51ccc10d74c157bdea3292" [[package]] name = "syn" -version = "2.0.96" +version = "2.0.113" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d5d0adab1ae378d7f53bdebc67a39f1f151407ef230f0ce2883572f5d8985c80" +checksum = "678faa00651c9eb72dd2020cbdf275d92eccb2400d568e419efdd64838145cb4" dependencies = [ "proc-macro2", "quote", @@ -3007,9 +2996,9 @@ dependencies = [ [[package]] name = "target-lexicon" -version = "0.13.3" +version = "0.13.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "df7f62577c25e07834649fc3b39fafdc597c0a3527dc1c60129201ccfcbaa50c" +checksum = "b1dd07eb858a2067e2f3c7155d54e929265c264e6f37efe3ee7a8d1b5a1dd0ba" [[package]] name = "testing_table" @@ -3031,11 +3020,11 @@ dependencies = [ [[package]] name = "thiserror" -version = "2.0.11" +version = "2.0.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d452f284b73e6d76dd36758a0c8684b1d5be31f92b89d07fd5822175732206fc" +checksum = "f63587ca0f12b72a0600bcba1d40081f830876000bb46dd2337a3051618f4fc8" dependencies = [ - "thiserror-impl 2.0.11", + "thiserror-impl 2.0.17", ] [[package]] @@ -3051,9 +3040,9 @@ dependencies = [ [[package]] name = "thiserror-impl" -version = "2.0.11" +version = "2.0.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "26afc1baea8a989337eeb52b6e72a039780ce45c3edfcc9c5b9d112feeb173c2" +checksum = "3ff15c8ecd7de3849db632e14d18d2571fa09dfc5ed93479bc4485c7a517c913" dependencies = [ "proc-macro2", "quote", @@ -3072,9 +3061,9 @@ dependencies = [ [[package]] name = "tinyvec" -version = "1.8.1" +version = "1.10.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "022db8904dfa342efe721985167e9fcd16c29b226db4397ed752a761cfce81e8" +checksum = "bfa5fdc3bce6191a1dbc8c02d5c8bffcf557bafa17c124c5264a458f1b0613fa" dependencies = [ "tinyvec_macros", ] @@ -3087,9 +3076,9 @@ checksum = "1f3ccbac311fea05f86f61904b462b55fb3df8837a366dfc601a0161d0532f20" [[package]] name = "tokio" -version = "1.48.0" +version = "1.49.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ff360e02eab121e0bc37a2d3b4d4dc622e6eda3a8e5253d5435ecf5bd4c68408" +checksum = "72a2903cd7736441aac9df9d7688bd0ce48edccaadf181c3b90be801e81d3d86" dependencies = [ "bytes", "libc", @@ -3123,9 +3112,9 @@ dependencies = [ [[package]] name = "tokio-util" -version = "0.7.13" +version = "0.7.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d7fcaa8d55a2bdd6b83ace262b016eca0d79ee02818c5c1bcdf0305114081078" +checksum = "9ae9cec805b01e8fc3fd2fe289f89149a9b66dd16786abd8b19cfa7b48cb0098" dependencies = [ "bytes", "futures-core", @@ -3181,9 +3170,9 @@ checksum = "8df9b6e13f2d32c91b9bd719c00d1958837bc7dec474d94952798cc8e69eeec3" [[package]] name = "tracing" -version = "0.1.43" +version = "0.1.44" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2d15d90a0b5c19378952d479dc858407149d7bb45a14de0142f6c534b16fc647" +checksum = "63e71662fa4b2a2c3a26f570f037eb95bb1f85397f3cd8076caed2f026a6d100" dependencies = [ "pin-project-lite", "tracing-attributes", @@ -3203,9 +3192,9 @@ dependencies = [ [[package]] name = "tracing-core" -version = "0.1.35" +version = "0.1.36" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7a04e24fab5c89c6a36eb8558c9656f30d81de51dfa4d3b45f26b21d61fa0a6c" +checksum = "db97caf9d906fbde555dd62fa95ddba9eecfd14cb388e4f491a66d74cd5fb79a" dependencies = [ "once_cell", ] @@ -3218,15 +3207,15 @@ checksum = "e421abadd41a4225275504ea4d6566923418b7f05506fbc9c0fe86ba7396114b" [[package]] name = "unicode-ident" -version = "1.0.14" +version = "1.0.22" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "adb9e6ca4f869e1180728b7950e35922a7fc6397f7b641499e8f3ef06e50dc83" +checksum = "9312f7c4f6ff9069b165498234ce8be658059c6728633667c526e27dc2cf1df5" [[package]] name = "unicode-normalization" -version = "0.1.24" +version = "0.1.25" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5033c97c4262335cded6d6fc3e5c18ab755e1a3dc96376350f3d8e9f009ad956" +checksum = "5fd4f6878c9cb28d874b009da9e8d183b5abc80117c40bbd187a1fde336be6e8" dependencies = [ "tinyvec", ] @@ -3248,15 +3237,15 @@ checksum = "f6ccf251212114b54433ec949fd6a7841275f9ada20dddd2f29e9ceea4501493" [[package]] name = "unicode-width" -version = "0.2.0" +version = "0.2.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1fc81956842c57dac11422a97c3b8195a1ff727f06e85c84ed2e8aa277c9a0fd" +checksum = "b4ac048d71ede7ee76d585517add45da530660ef4390e49b098733c6e897f254" [[package]] name = "unindent" -version = "0.2.3" +version = "0.2.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c7de7d73e1754487cb58364ee906a499937a0dfabd86bcb980fa99ec8c8fa2ce" +checksum = "7264e107f553ccae879d21fbea1d6724ac785e8c3bfc762137959b5802826ef3" [[package]] name = "untrusted" @@ -3266,13 +3255,14 @@ checksum = "8ecb6da28b8a351d773b68d5825ac39017e680750f980f3a1a85cd8dd28a47c1" [[package]] name = "url" -version = "2.5.4" +version = "2.5.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "32f8b686cadd1473f4bd0117a5d28d36b1ade384ea9b5069a1c40aefed7fda60" +checksum = "ff67a8a4397373c3ef660812acab3268222035010ab8680ec4215f38ba3d0eed" dependencies = [ "form_urlencoded", "idna", "percent-encoding", + "serde", ] [[package]] @@ -3287,7 +3277,7 @@ version = "1.19.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e2e054861b4bd027cd373e18e8d8d8e6548085000e41290d95ce0c373a654b4a" dependencies = [ - "getrandom 0.3.2", + "getrandom 0.3.4", "js-sys", "wasm-bindgen", ] @@ -3331,50 +3321,37 @@ dependencies = [ [[package]] name = "wasi" -version = "0.11.0+wasi-snapshot-preview1" +version = "0.11.1+wasi-snapshot-preview1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423" +checksum = "ccf3ec651a847eb01de73ccad15eb7d99f80485de043efb2f370cd654f4ea44b" [[package]] -name = "wasi" -version = "0.14.2+wasi-0.2.4" +name = "wasip2" +version = "1.0.1+wasi-0.2.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9683f9a5a998d873c0d21fcbe3c083009670149a8fab228644b8bd36b2c48cb3" +checksum = "0562428422c63773dad2c345a1882263bbf4d65cf3f42e90921f787ef5ad58e7" dependencies = [ - "wit-bindgen-rt", + "wit-bindgen", ] [[package]] name = "wasm-bindgen" -version = "0.2.100" +version = "0.2.106" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1edc8929d7499fc4e8f0be2262a241556cfc54a0bea223790e71446f2aab1ef5" +checksum = "0d759f433fa64a2d763d1340820e46e111a7a5ab75f993d1852d70b03dbb80fd" dependencies = [ "cfg-if", "once_cell", "rustversion", "wasm-bindgen-macro", -] - -[[package]] -name = "wasm-bindgen-backend" -version = "0.2.100" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2f0a0651a5c2bc21487bde11ee802ccaf4c51935d0d3d42a6101f98161700bc6" -dependencies = [ - "bumpalo", - "log", - "proc-macro2", - "quote", - "syn", "wasm-bindgen-shared", ] [[package]] name = "wasm-bindgen-futures" -version = "0.4.50" +version = "0.4.56" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "555d470ec0bc3bb57890405e5d4322cc9ea83cebb085523ced7be4144dac1e61" +checksum = "836d9622d604feee9e5de25ac10e3ea5f2d65b41eac0d9ce72eb5deae707ce7c" dependencies = [ "cfg-if", "js-sys", @@ -3385,9 +3362,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro" -version = "0.2.100" +version = "0.2.106" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7fe63fc6d09ed3792bd0897b314f53de8e16568c2b3f7982f468c0bf9bd0b407" +checksum = "48cb0d2638f8baedbc542ed444afc0644a29166f1595371af4fecf8ce1e7eeb3" dependencies = [ "quote", "wasm-bindgen-macro-support", @@ -3395,22 +3372,22 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro-support" -version = "0.2.100" +version = "0.2.106" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8ae87ea40c9f689fc23f209965b6fb8a99ad69aeeb0231408be24920604395de" +checksum = "cefb59d5cd5f92d9dcf80e4683949f15ca4b511f4ac0a6e14d4e1ac60c6ecd40" dependencies = [ + "bumpalo", "proc-macro2", "quote", "syn", - "wasm-bindgen-backend", "wasm-bindgen-shared", ] [[package]] name = "wasm-bindgen-shared" -version = "0.2.100" +version = "0.2.106" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1a05d73b933a847d6cccdda8f838a22ff101ad9bf93e33684f39c1f5f0eece3d" +checksum = "cbc538057e648b67f72a982e708d485b2efa771e1ac05fec311f9f63e5800db4" dependencies = [ "unicode-ident", ] @@ -3430,9 +3407,9 @@ dependencies = [ [[package]] name = "web-sys" -version = "0.3.77" +version = "0.3.83" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "33b6dd2ef9186f1f2072e409e99cd22a975331a6b3591b12c764e0e55c60d5d2" +checksum = "9b32828d774c412041098d182a8b38b16ea816958e07cf40eec2bc080ae137ac" dependencies = [ "js-sys", "wasm-bindgen", @@ -3491,23 +3468,27 @@ dependencies = [ [[package]] name = "windows-core" -version = "0.52.0" +version = "0.57.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "33ab640c8d7e35bf8ba19b884ba838ceb4fba93a4e8c65a9059d08afcfc683d9" +checksum = "d2ed2439a290666cd67ecce2b0ffaad89c2a56b976b736e6ece670297897832d" dependencies = [ + "windows-implement 0.57.0", + "windows-interface 0.57.0", + "windows-result 0.1.2", "windows-targets 0.52.6", ] [[package]] name = "windows-core" -version = "0.57.0" +version = "0.62.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d2ed2439a290666cd67ecce2b0ffaad89c2a56b976b736e6ece670297897832d" +checksum = "b8e83a14d34d0623b51dce9581199302a221863196a1dde71a7663a4c2be9deb" dependencies = [ - "windows-implement", - "windows-interface", - "windows-result", - "windows-targets 0.52.6", + "windows-implement 0.60.2", + "windows-interface 0.59.3", + "windows-link", + "windows-result 0.4.1", + "windows-strings", ] [[package]] @@ -3521,6 +3502,17 @@ dependencies = [ "syn", ] +[[package]] +name = "windows-implement" +version = "0.60.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "053e2e040ab57b9dc951b72c264860db7eb3b0200ba345b4e4c3b14f67855ddf" +dependencies = [ + "proc-macro2", + "quote", + "syn", +] + [[package]] name = "windows-interface" version = "0.57.0" @@ -3532,6 +3524,17 @@ dependencies = [ "syn", ] +[[package]] +name = "windows-interface" +version = "0.59.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3f316c4a2570ba26bbec722032c4099d8c8bc095efccdc15688708623367e358" +dependencies = [ + "proc-macro2", + "quote", + "syn", +] + [[package]] name = "windows-link" version = "0.2.1" @@ -3547,6 +3550,24 @@ dependencies = [ "windows-targets 0.52.6", ] +[[package]] +name = "windows-result" +version = "0.4.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7781fa89eaf60850ac3d2da7af8e5242a5ea78d1a11c49bf2910bb5a73853eb5" +dependencies = [ + "windows-link", +] + +[[package]] +name = "windows-strings" +version = "0.5.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7837d08f69c77cf6b07689544538e017c1bfcf57e34b4c0ff58e6c2cd3b37091" +dependencies = [ + "windows-link", +] + [[package]] name = "windows-sys" version = "0.52.0" @@ -3713,13 +3734,10 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d6bbff5f0aada427a1e5a6da5f1f98158182f26556f345ac9e04d36d0ebed650" [[package]] -name = "wit-bindgen-rt" -version = "0.39.0" +name = "wit-bindgen" +version = "0.46.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6f42320e61fe2cfd34354ecb597f86f413484a798ba44a8ca1165c58d42da6c1" -dependencies = [ - "bitflags", -] +checksum = "f17a85883d4e6d00e8a97c586de764dabcc06133f7f1d55dce5cdc070ad7fe59" [[package]] name = "writeable" @@ -3758,19 +3776,18 @@ dependencies = [ [[package]] name = "zerocopy" -version = "0.7.35" +version = "0.8.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1b9b4fd18abc82b8136838da5d50bae7bdea537c574d8dc1a34ed098d6c166f0" +checksum = "fd74ec98b9250adb3ca554bdde269adf631549f51d8a8f8f0a10b50f1cb298c3" dependencies = [ - "byteorder", "zerocopy-derive", ] [[package]] name = "zerocopy-derive" -version = "0.7.35" +version = "0.8.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fa4f8080344d4671fb4e831a13ad1e68092748387dfc4f55e356242fae12ce3e" +checksum = "d8a8d209fdf45cf5138cbb5a506f6b52522a25afccc534d1475dad8e31105c6a" dependencies = [ "proc-macro2", "quote", @@ -3837,29 +3854,35 @@ dependencies = [ "syn", ] +[[package]] +name = "zmij" +version = "1.0.12" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2fc5a66a20078bf1251bde995aa2fdcc4b800c70b5d92dd2c62abc5c60f679f8" + [[package]] name = "zstd" -version = "0.13.2" +version = "0.13.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fcf2b778a664581e31e389454a7072dab1647606d44f7feea22cd5abb9c9f3f9" +checksum = "e91ee311a569c327171651566e07972200e76fcfe2242a4fa446149a3881c08a" dependencies = [ "zstd-safe", ] [[package]] name = "zstd-safe" -version = "7.2.1" +version = "7.2.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "54a3ab4db68cea366acc5c897c7b4d4d1b8994a9cd6e6f841f8964566a419059" +checksum = "8f49c4d5f0abb602a93fb8736af2a4f4dd9512e36f7f570d66e65ff867ed3b9d" dependencies = [ "zstd-sys", ] [[package]] name = "zstd-sys" -version = "2.0.13+zstd.1.5.6" +version = "2.0.16+zstd.1.5.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "38ff0f21cfee8f97d94cef41359e0c89aa6113028ab0291aa8ca0038995a95aa" +checksum = "91e19ebc2adc8f83e43039e79776e3fda8ca919132d68a1fed6a5faca2683748" dependencies = [ "cc", "pkg-config", diff --git a/Cargo.toml b/Cargo.toml index abe80ded..9b859874 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -17,9 +17,11 @@ polars = { version = "0.48.1", features = ["polars-io", "dtype-full"] } chrono = { version = "0.4.38", features = ["serde"] } pyo3 = { version = "0.24", features = ["chrono", "extension-module"] } rayon = "1.10.0" +bincode = "1.3.3" medmodels = { version = "0.4.6", path = "crates/medmodels" } medmodels-core = { version = "0.4.6", path = "crates/medmodels-core" } medmodels-utils = { version = "0.4.6", path = "crates/medmodels-utils" } medmodels-python = { version = "0.4.6", path = "crates/medmodels-python" } py-medmodels = { version = "0.4.6", path = "crates/py-medmodels" } +medmodels-pyo3-interop = { version = "0.4.6", path = "crates/medmodels-pyo3-interop" } diff --git a/crates/medmodels-pyo3-interop/Cargo.toml b/crates/medmodels-pyo3-interop/Cargo.toml new file mode 100644 index 00000000..e441eecf --- /dev/null +++ b/crates/medmodels-pyo3-interop/Cargo.toml @@ -0,0 +1,16 @@ +[package] +name = "medmodels-pyo3-interop" +version = { workspace = true } +description = { workspace = true } +edition = { workspace = true } +repository = { workspace = true } +license = { workspace = true } +readme = "README.md" + + +[dependencies] +medmodels = { workspace = true } +medmodels-python = { workspace = true } + +pyo3 = { workspace = true } +bincode = { workspace = true } diff --git a/crates/medmodels-pyo3-interop/README.md b/crates/medmodels-pyo3-interop/README.md new file mode 100644 index 00000000..e69de29b diff --git a/crates/medmodels-pyo3-interop/src/conversion.rs b/crates/medmodels-pyo3-interop/src/conversion.rs new file mode 100644 index 00000000..bf6ee4f0 --- /dev/null +++ b/crates/medmodels-pyo3-interop/src/conversion.rs @@ -0,0 +1,57 @@ +use medmodels::core::MedRecord; +use pyo3::{ + types::{PyAnyMethods, PyBytes, PyBytesMethods}, + Bound, FromPyObject, IntoPyObject, PyAny, PyErr, PyResult, Python, +}; + +#[repr(transparent)] +#[derive(Debug, Clone)] +pub struct PyMedRecord(pub MedRecord); + +impl From for PyMedRecord { + fn from(value: MedRecord) -> Self { + PyMedRecord(value) + } +} + +impl From for MedRecord { + fn from(value: PyMedRecord) -> Self { + value.0 + } +} + +impl AsRef for PyMedRecord { + fn as_ref(&self) -> &MedRecord { + &self.0 + } +} + +impl<'py> FromPyObject<'py> for PyMedRecord { + fn extract_bound(ob: &Bound<'py, PyAny>) -> PyResult { + let bytes = ob.call_method0("_to_bytes")?; + let py_bytes: &Bound<'py, PyBytes> = bytes.downcast()?; + + let medrecord = bincode::deserialize(py_bytes.as_bytes()) + .map_err(|e| PyErr::new::(e.to_string()))?; + + Ok(Self(medrecord)) + } +} + +impl<'py> IntoPyObject<'py> for PyMedRecord { + type Target = PyAny; + type Output = Bound<'py, PyAny>; + type Error = PyErr; + + fn into_pyobject(self, py: Python<'py>) -> Result { + let bytes = bincode::serialize(&self.0) + .map_err(|e| PyErr::new::(e.to_string()))?; + + let py_bytes = PyBytes::new(py, &bytes); + + let py_medrecord_class = py.import("medmodels._medmodels")?.getattr("PyMedRecord")?; + let obj = py_medrecord_class.call_method1("_from_bytes", (py_bytes,))?; + + Ok(obj) + } +} diff --git a/crates/medmodels-pyo3-interop/src/lib.rs b/crates/medmodels-pyo3-interop/src/lib.rs new file mode 100644 index 00000000..c1a8daa6 --- /dev/null +++ b/crates/medmodels-pyo3-interop/src/lib.rs @@ -0,0 +1,8 @@ +mod conversion; +pub mod traits; + +pub use conversion::*; +pub use medmodels_python::prelude::{ + PyAttributes, PyEdgeIndex, PyGroup, PyMedRecordAttribute, PyMedRecordError, PyMedRecordValue, + PyNodeIndex, +}; diff --git a/crates/medmodels-pyo3-interop/src/traits.rs b/crates/medmodels-pyo3-interop/src/traits.rs new file mode 100644 index 00000000..b842a536 --- /dev/null +++ b/crates/medmodels-pyo3-interop/src/traits.rs @@ -0,0 +1 @@ +pub use medmodels_python::medrecord::traits::*; diff --git a/crates/medmodels-python/Cargo.toml b/crates/medmodels-python/Cargo.toml index 7cf2fda7..7043aa45 100644 --- a/crates/medmodels-python/Cargo.toml +++ b/crates/medmodels-python/Cargo.toml @@ -15,7 +15,7 @@ chrono = { workspace = true } serde = { workspace = true } rayon = { workspace = true } pyo3 = { workspace = true } +bincode = { workspace = true } pyo3-polars = "0.21.0" numpy = "0.24.0" -bincode = "1.3.3" diff --git a/crates/medmodels-python/src/medrecord/mod.rs b/crates/medmodels-python/src/medrecord/mod.rs index 160d720c..8ccb7759 100644 --- a/crates/medmodels-python/src/medrecord/mod.rs +++ b/crates/medmodels-python/src/medrecord/mod.rs @@ -15,12 +15,13 @@ use crate::{ }; use attribute::PyMedRecordAttribute; use errors::PyMedRecordError; -use medmodels::core::medrecord::{ - Attributes, EdgeIndex, MedRecord, MedRecordAttribute, MedRecordValue, +use medmodels::core::{ + errors::MedRecordError, + medrecord::{Attributes, EdgeIndex, MedRecord, MedRecordAttribute, MedRecordValue}, }; use pyo3::{ prelude::*, - types::{PyDict, PyFunction}, + types::{PyBytes, PyDict, PyFunction}, }; use pyo3_polars::PyDataFrame; use querying::{edges::PyEdgeOperand, nodes::PyNodeOperand, PyReturnOperand, PyReturnValue}; @@ -32,6 +33,7 @@ use value::PyMedRecordValue; pub type PyAttributes = HashMap; pub type PyGroup = PyMedRecordAttribute; pub type PyNodeIndex = PyMedRecordAttribute; +pub type PyEdgeIndex = EdgeIndex; type Lut = GILHashMap) -> PyResult>; #[pyclass] @@ -64,6 +66,23 @@ impl PyMedRecord { Self(MedRecord::new()) } + pub fn _to_bytes<'py>(&self, py: Python<'py>) -> PyResult> { + let bytes = bincode::serialize(&self.0) + .map_err(|_| MedRecordError::ConversionError("Could not serialize MedRecord".into())) + .map_err(PyMedRecordError::from)?; + + Ok(PyBytes::new(py, &bytes)) + } + + #[staticmethod] + pub fn _from_bytes(data: &Bound<'_, PyBytes>) -> PyResult { + let medrecord = bincode::deserialize(data.as_bytes()) + .map_err(|_| MedRecordError::ConversionError("Could not deserialize MedRecord".into())) + .map_err(PyMedRecordError::from)?; + + Ok(Self(medrecord)) + } + #[staticmethod] pub fn with_schema(schema: PySchema) -> Self { Self(MedRecord::with_schema(schema.into())) diff --git a/crates/medmodels-python/src/prelude.rs b/crates/medmodels-python/src/prelude.rs index f59f82c6..1a9b01ac 100644 --- a/crates/medmodels-python/src/prelude.rs +++ b/crates/medmodels-python/src/prelude.rs @@ -1,7 +1,9 @@ pub use crate::medrecord::{ + attribute::PyMedRecordAttribute, datatype::{ PyAny, PyBool, PyDateTime, PyDuration, PyFloat, PyInt, PyNull, PyOption, PyString, PyUnion, }, + errors::PyMedRecordError, overview::{ PyAttributeOverview, PyEdgeGroupOverview, PyGroupOverview, PyNodeGroupOverview, PyOverview, }, @@ -40,5 +42,6 @@ pub use crate::medrecord::{ PyMatchMode, }, schema::{PyAttributeDataType, PyAttributeType, PyGroupSchema, PySchema, PySchemaType}, - PyMedRecord, + value::PyMedRecordValue, + PyAttributes, PyEdgeIndex, PyGroup, PyMedRecord, PyNodeIndex, }; diff --git a/medmodels/_medmodels.pyi b/medmodels/_medmodels.pyi index 750939da..f8c3f32b 100644 --- a/medmodels/_medmodels.pyi +++ b/medmodels/_medmodels.pyi @@ -168,6 +168,9 @@ class PyMedRecord: groups: List[Group] def __init__(self) -> None: ... + def _to_bytes(self) -> bytes: ... + @staticmethod + def _from_bytes(data: bytes) -> PyMedRecord: ... @staticmethod def with_schema(schema: PySchema) -> PyMedRecord: ... @staticmethod