From 650e86081c935a7be12b35e49bf15eda914768d3 Mon Sep 17 00:00:00 2001
From: Sam Schiano <125507018+Schiano-NOAA@users.noreply.github.com>
Date: Mon, 19 Oct 2026 16:28:44 -0400
Subject: [PATCH 1/2] separate update example gha by model

---
 .github/workflows/update-bam-example-data.yml | 39 +++++++++++++++++++
 .github/workflows/update-example-data.yml     | 39 +++++++++++++++++++
 .../update-rceattle-example-data.yml          |  2 +-
 .github/workflows/update-ss3-example-data.yml | 13 +++----
 4 files changed, 84 insertions(+), 9 deletions(-)
 create mode 100644 .github/workflows/update-bam-example-data.yml
 create mode 100644 .github/workflows/update-example-data.yml

diff --git a/.github/workflows/update-bam-example-data.yml b/.github/workflows/update-bam-example-data.yml
new file mode 100644
index 00000000..50072b15
--- /dev/null
+++ b/.github/workflows/update-bam-example-data.yml
@@ -0,0 +1,39 @@
+# Update example data when convert_output.R or variable-name resources change
+name: update-bam-example-data
+on:
+  pull_request:
+    branches: [main]
+    paths:
+      - 'R/conout_bam.R'
+      - 'inst/resources/bam_var_names.csv'
+  workflow_dispatch:
+jobs:
+  update-example-data:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          repository: ${{ github.event_name == 'pull_request' && github.event.pull_request.head.repo.full_name || github.repository }}
+          ref: ${{ github.event_name == 'pull_request' && github.event.pull_request.head.ref || github.ref_name }}
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pak, any::usethis, local::.
+
+      - name: Update example data
+        run: Rscript data-raw/DATASET_BAM.R
+
+      - name: Commit and push updated example data
+        if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
+        run: |
+          git config user.name "github-actions[bot]"
+          git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git add data/VermilionSnapper.rda
+          git diff --cached --quiet || git commit -m "chore: update BAM vermilion snapper example from converter resource changes (triggered by $(git log -1 --pretty=format:'%h %s' HEAD)) [skip ci]"
+          git push
diff --git a/.github/workflows/update-example-data.yml b/.github/workflows/update-example-data.yml
new file mode 100644
index 00000000..1c6a03a2
--- /dev/null
+++ b/.github/workflows/update-example-data.yml
@@ -0,0 +1,39 @@
+# Update example data when convert_output.R or variable-name resources change
+name: update-example-data
+on:
+  pull_request:
+    branches: [main]
+    paths:
+      - 'R/conout_ss3.R'
+      - 'inst/resources/ss3_var_names.csv'
+  workflow_dispatch:
+jobs:
+  update-example-data:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          repository: ${{ github.event_name == 'pull_request' && github.event.pull_request.head.repo.full_name || github.repository }}
+          ref: ${{ github.event_name == 'pull_request' && github.event.pull_request.head.ref || github.ref_name }}
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pak, any::usethis, local::.
+
+      - name: Update example data
+        run: Rscript data-raw/DATASET.R
+
+      - name: Commit and push updated example data
+        if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
+        run: |
+          git config user.name "github-actions[bot]"
+          git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git add data/example_data.rda
+          git diff --cached --quiet || git commit -m "chore: update SS3 example_data from converter resource changes (triggered by $(git log -1 --pretty=format:'%h %s' HEAD)) [skip ci]"
+          git push
diff --git a/.github/workflows/update-rceattle-example-data.yml b/.github/workflows/update-rceattle-example-data.yml
index d9ba8e6e..fbefdaed 100644
--- a/.github/workflows/update-rceattle-example-data.yml
+++ b/.github/workflows/update-rceattle-example-data.yml
@@ -4,7 +4,7 @@ on:
   pull_request:
     branches: [main]
     paths:
-      - 'R/convert_output.R'
+      - 'R/conout_rceattle.R'
       - 'inst/resources/rceattle_var_names.csv'
   workflow_dispatch:
 jobs:
diff --git a/.github/workflows/update-ss3-example-data.yml b/.github/workflows/update-ss3-example-data.yml
index 6dca7f56..51568327 100644
--- a/.github/workflows/update-ss3-example-data.yml
+++ b/.github/workflows/update-ss3-example-data.yml
@@ -1,14 +1,11 @@
 # Update example data when convert_output.R or variable-name resources change
-name: update-example-data
+name: update-ss3-example-data
 on:
   pull_request:
     branches: [main]
     paths:
-      - 'R/convert_output.R'
-      - 'inst/resources/bam_var_names.csv'
+      - 'R/conout_ss3.R'
       - 'inst/resources/ss3_var_names.csv'
-      - 'inst/resources/rceattle_var_names.csv'
-      - 'inst/resources/fims_var_names.csv'
   workflow_dispatch:
 jobs:
   update-example-data:
@@ -30,13 +27,13 @@ jobs:
           extra-packages: any::pak, any::usethis, local::.
 
       - name: Update example data
-        run: Rscript data-raw/DATASET.R
+        run: Rscript data-raw/DATASET_SS3.R
 
       - name: Commit and push updated example data
         if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
         run: |
           git config user.name "github-actions[bot]"
           git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
-          git add data/example_data.rda
-          git diff --cached --quiet || git commit -m "chore: update example_data from converter resource changes (triggered by $(git log -1 --pretty=format:'%h %s' HEAD)) [skip ci]"
+          git add data/ss3_simple.rda
+          git diff --cached --quiet || git commit -m "chore: update SS3 r4ss example_data from converter resource changes (triggered by $(git log -1 --pretty=format:'%h %s' HEAD)) [skip ci]"
           git push

From 9bd31245601280ede22e940472409fd7b2b4ed15 Mon Sep 17 00:00:00 2001
From: Sam Schiano <125507018+Schiano-NOAA@users.noreply.github.com>
Date: Wed, 21 Oct 2026 14:33:29 -0400
Subject: [PATCH 2/2] add notes to specify example data in gha script and
 update vermilion snapper save file name

---
 .github/workflows/update-bam-example-data.yml      | 2 +-
 .github/workflows/update-example-data.yml          | 2 +-
 .github/workflows/update-rceattle-example-data.yml | 2 +-
 .github/workflows/update-ss3-example-data.yml      | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/update-bam-example-data.yml b/.github/workflows/update-bam-example-data.yml
index 50072b15..d8101a72 100644
--- a/.github/workflows/update-bam-example-data.yml
+++ b/.github/workflows/update-bam-example-data.yml
@@ -34,6 +34,6 @@ jobs:
         run: |
           git config user.name "github-actions[bot]"
           git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
-          git add data/VermilionSnapper.rda
+          git add data/vermilion_snapper.rda
           git diff --cached --quiet || git commit -m "chore: update BAM vermilion snapper example from converter resource changes (triggered by $(git log -1 --pretty=format:'%h %s' HEAD)) [skip ci]"
           git push
diff --git a/.github/workflows/update-example-data.yml b/.github/workflows/update-example-data.yml
index 1c6a03a2..02244c4b 100644
--- a/.github/workflows/update-example-data.yml
+++ b/.github/workflows/update-example-data.yml
@@ -1,4 +1,4 @@
-# Update example data when convert_output.R or variable-name resources change
+# Update ss3 example data from Report.sso when convert_output.R or variable-name resources change
 name: update-example-data
 on:
   pull_request:
diff --git a/.github/workflows/update-rceattle-example-data.yml b/.github/workflows/update-rceattle-example-data.yml
index fbefdaed..97f6ebd2 100644
--- a/.github/workflows/update-rceattle-example-data.yml
+++ b/.github/workflows/update-rceattle-example-data.yml
@@ -1,4 +1,4 @@
-# Update example data when convert_output.R or variable-name resources change
+# Update Rceattle example data when convert_output.R or variable-name resources change
 name: update-rceattle-example-data
 on:
   pull_request:
diff --git a/.github/workflows/update-ss3-example-data.yml b/.github/workflows/update-ss3-example-data.yml
index 51568327..789c187f 100644
--- a/.github/workflows/update-ss3-example-data.yml
+++ b/.github/workflows/update-ss3-example-data.yml
@@ -1,4 +1,4 @@
-# Update example data when convert_output.R or variable-name resources change
+# Update ss3 example data from r4ss object when convert_output.R or variable-name resources change
 name: update-ss3-example-data
 on:
   pull_request: