Issues

• cloneLib failure not in official release FYI

  statgen/bamUtil#74 · Filter by author WorksAtAUni opened on Dec 13, 2024

• Do not use makefiles from libStatGen

  statgen/bamUtil#73 · Filter by author alexreg opened on Sep 2, 2024

• Erroneous CIGAR string after clipOverlap

  statgen/bamUtil#72 · Filter by author MboiTui opened on May 27, 2024
  2

• splitChromosome without header?

  statgen/bamUtil#71 · Filter by author jtmorgan0 opened on Apr 8, 2024

• License?

  statgen/bamUtil#70 · Filter by author jjv5 opened on Feb 16, 2024
  1

• Odd stats reported for clipOverlap

  statgen/bamUtil#69 · Filter by author joegeorgeson opened on Oct 23, 2022

• bamutil diff - Get record for every read being compared

  statgen/bamUtil#66 · Filter by author DavidStreid opened on Oct 6, 2021
  2

• can not install with conda

  statgen/bamUtil#65 · Filter by author Frank1219 opened on Sep 30, 2021
  2

• bash -x testBam2FastQ.sh and bash -x testMergeBam.sh failed on centos8_aarch64

  statgen/bamUtil#64 · Filter by author Tom-python0121 opened on Sep 14, 2021

• bam2FastQ generates empty fastq files

  statgen/bamUtil#63 · Filter by author LanyingMa opened on Aug 9, 2021

• Error building from source: libStatGen

  statgen/bamUtil#61 · Filter by author moldach opened on Jan 15, 2021
  3

• bam diff seems to return the reads that look identical between A and B

  statgen/bamUtil#59 · Filter by author hisplan opened on Jun 13, 2020
  1

• Makefile should not ignore system LDFLAGS

  statgen/bamUtil#58 · Filter by author bichkd opened on Jun 9, 2020

• cannot consume -.ubam on a pipe

  statgen/bamUtil#57 · Filter by author bwlang opened on May 29, 2020
  2

• Cannot Compile NonPrimaryDedup Branch

  statgen/bamUtil#56 · Filter by author BrenKenna opened on Oct 16, 2019
  5

• Dedup does not work from std/in

  statgen/bamUtil#55 · Filter by author slazicoicr opened on Apr 4, 2019
  2

• bam diff should exit with a return code

  statgen/bamUtil#54 · Filter by author hisplan opened on Feb 28, 2019

• Cut middle of reads

  statgen/bamUtil#53 · Filter by author shimbalama opened on Jan 15, 2019
  2

• Building bamUtil returns error: undefined reference

  statgen/bamUtil#52 · Filter by author Dlfn opened on Dec 5, 2018
  4

• clipOverlap in outward facing pairs

  statgen/bamUtil#48 · Filter by author dariober opened on Jan 18, 2018
  1

• bam diff when 2 reads have indentical names AND start positions?

  statgen/bamUtil#47 · Filter by author anderspitman opened on Jan 3, 2018
  1

• Compilation doesn't work (warnings=errors)

  statgen/bamUtil#45 · Filter by author Tsallagov opened on Oct 20, 2017
  5

• Assumption made in code masked by earlier check.

  statgen/bamUtil#42 · Filter by author innovate-invent opened on May 13, 2017
  6

• Update wiki build insturctions

  statgen/bamUtil#23 · Filter by author andrewrech opened on Mar 16, 2016
  1

• bam recab: parallel processing

  statgen/bamUtil#21 · Filter by author andreas-wilm opened on Jan 29, 2016
  4