Issues

• Demultiplexing of snAtcSeq data using demuxlet gives an empty output

  statgen/demuxlet#115 · Filter by author yaskermezli opened on Jun 28, 2025
  4

• Assessing cross-genotype contamination in pooled snRNAseq data using per-read donor assignments

  statgen/demuxlet#114 · Filter by author marusakod opened on Jan 20, 2025

• Segmentation fault (core dumped) using 8 vcf samples

  statgen/demuxlet#113 · Filter by author syjoh96 opened on Oct 7, 2024

• Segmentation fault after initializing SAM reader

  statgen/demuxlet#107 · Filter by author littmanr16 opened on Sep 1, 2023
  2

• Required depth for WGS

  statgen/demuxlet#106 · Filter by author daccachejoe opened on Aug 18, 2023

• The demuxlet is running too slowly.

  statgen/demuxlet#105 · Filter by author baibing0211 opened on Aug 11, 2023
  1

• How to use microarray SNP data as reference genotypes in demuxlet?

  statgen/demuxlet#104 · Filter by author josemovi opened on Jul 20, 2023

• how to calculate raw reads count number for each genotype for a droplet.

  statgen/demuxlet#103 · Filter by author mihuzx opened on Jul 7, 2023

• SAM/BAM/CRAM file has 1 before 10, but VCF/BCF file has 1 after 10

  statgen/demuxlet#102 · Filter by author WernaUVenema opened on Apr 24, 2023
  7

• install demuxlet

  statgen/demuxlet#101 · Filter by author DevelopmentalCellAtlas opened on Apr 17, 2023
  1

• arrays for snp detection

  statgen/demuxlet#100 · Filter by author guillemsanchezsanchez1996 opened on Apr 16, 2023

• demuxlet output first row is not contain the barcode information

  statgen/demuxlet#99 · Filter by author cacaonib opened on Nov 21, 2022
  1

• Using single-nuclear samples

  statgen/demuxlet#97 · Filter by author learning-MD opened on Oct 8, 2022

• Different Genotype arrays for demultiplexing samples

  statgen/demuxlet#96 · Filter by author carolynmcgrail opened on Oct 5, 2022
  1

• Getting number of SNPs and SNP IDs used to assign each cell

  statgen/demuxlet#95 · Filter by author erosix opened on Aug 1, 2022
  1

• Is there any example using demuxlet with scRNA-seq platforms other than 10x?

  statgen/demuxlet#94 · Filter by author kohjy2000 opened on Jul 18, 2022
  1

• Crash due to std::bad_alloc

  statgen/demuxlet#93 · Filter by author SingulomicsBioinformatics opened on Jun 10, 2022

• WARNING: Cannot find AF field from INFO field in VCF file, now calculate AF from AC/AN. Segmentation fault

  statgen/demuxlet#92 · Filter by author changostraw opened on May 30, 2022
  2

• VCF file read bug

  statgen/demuxlet#91 · Filter by author BanafshehKhaki opened on Mar 14, 2022
  2

• The total number of pass-filtered reads is too less

  statgen/demuxlet#90 · Filter by author Moxsf opened on Feb 22, 2022
  11

• installation issues

  statgen/demuxlet#89 · Filter by author lo2811 opened on Feb 18, 2022

• Explictly warn/fail when an indel is encountered

  statgen/demuxlet#84 · Filter by author nh13 opened on Jan 20, 2021
  3

• Identify sex (contig ploidy) of samples

  statgen/demuxlet#83 · Filter by author nh13 opened on Jan 20, 2021

• Demuxlet Output Questions

  statgen/demuxlet#82 · Filter by author nh13 opened on Jan 8, 2021
  2

• installation problems

  statgen/demuxlet#79 · Filter by author jjenny opened on Dec 9, 2020
  8