Issues

• [BUG]: Edge cases affecting the suptyping_report.py

  bug
  CFIA-NCFAD/nf-flu#134 · Filter by author Codes1985 opened on Jun 2, 2026
  

• [BUG]: VADR failing sequence with large insertion relative to top reference

  bug
  CFIA-NCFAD/nf-flu#122 · Filter by author Vikash84 opened on Oct 29, 2025
  2

  

• [BUG]: MultiQC takes too long (may never complete) to generate report with large sample numbers (e.g., 96)

  bug
  CFIA-NCFAD/nf-flu#121 · Filter by author Codes1985 opened on Oct 9, 2025
  3

  

• Alternative reference sequence selection subworkflow to IRMA and BLAST

  enhancement
  CFIA-NCFAD/nf-flu#81 · Filter by author peterk87 opened on Sep 25, 2024

• Update IRMA

  CFIA-NCFAD/nf-flu#80 · Filter by author peterk87 opened on Sep 25, 2024
  1

• Optional dehosting

  enhancement
  CFIA-NCFAD/nf-flu#50 · Filter by author peterk87 opened on Sep 14, 2023
  2

• [BUG]: Error executing process > 'NF_FLU:ILLUMINA:SUBTYPING_REPORT (1)'

  bug
  CFIA-NCFAD/nf-flu#46 · Filter by author PierreLyons opened on Sep 11, 2023
  9

  

• Variant calling results should be used instead of BLAST to compare read mapping/variant calling consensus to reference sequences not necessary

  enhancement
  CFIA-NCFAD/nf-flu#2 · Filter by author peterk87 opened on Jun 9, 2022
  

• Add custom references FASTA for CI tests

  enhancement
  CFIA-NCFAD/nf-flu#1 · Filter by author peterk87 opened on Jun 9, 2022