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CexyNature/README.md

Hi there, I'm César Herrera 👋

César Herrera, Ph.D. Venezuela Australia

Marine Ecologist & Ecological AI Scientist

Research Focus AIMS


USB JCU Griffith


🌊 About Me & Research Vision

"My research focuses on understanding how and why biodiversity (whom) drives ecosystem functioning (what). From intertidal invertebrates to tropical coral reef matrices, I combine ecological theory with scientific machine learning, computer vision, AI and probabilistic modeling to understand nature and create the systems that allow us to protect it."

At the Australian Institute of Marine Science (AIMS) my work focuses on bridging the gap between field observations, complex physical-ecological simulations, and real-time decision support.

Beyond core computational workflows, I have an enduring personal passion for the ecology and behaviour of intertidal crabs, fish movement, metascience, scientific outreach, and advancing the public understanding of science.

🔬 What I Work On

mindmap
  root((César Herrera))
    Digital Twins
      Bidirectional IoT & Telemetry
      Controlled Experiments
      Reef-Scale Digital Shadows
    Scientific Machine Learning (SciML)
      PINNs
      Neural Bayes Estimators
      Surrogate Models & ST-GNNs
      Simulations
    3D Vision & Photogrammetry
      3D Gaussian Splatting
      Underwater Structure-from-Motion
      Monocular Depth Estimation
    GenAI & Knowledge Retrieval
      Multimodal Ecological Knowledge Bases
      Marine DNA & Microbial Diagnostics
    Ecology
        Biodiversity & Ecosystem Functioning
        Crabs & Fish Behavior and Movement
        Invertebrates
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📬 Connect & Collaborate

  • 🤝 Collaborations: Open to discussions on Scientific Machine Learning, ocean digital twins, underwater photogrammetry/computer vision, and AI for nature conservation.

Pinned Loading

  1. Crabspy Crabspy Public

    An heuristic toolbox for spying* intertidal crabs in their environment; built in Python. In continuous development. * Furtively collect information about crabs biology and ecology

    Python 9 2

  2. phd_references phd_references Public

    Standing on the shoulders of giants: recognizing the influential authors in my PhD thesis

    R 2

  3. ecoinformatics-template ecoinformatics-template Public template

    A Python template for eco-informatics and computer vision projects

    Jupyter Notebook

  4. Tweets_at_ESAus18 Tweets_at_ESAus18 Public

    Tweets coverage at Ecological Society of Australia Conference 2018, Brisbane, Australia

  5. Consult_observations_BOM Consult_observations_BOM Public

    Python

  6. Info_TownsvilleFloods Info_TownsvilleFloods Public

    Repo with information about assistance, aids and donations related to the Far and North Queensland flooding events in 2019