Issues

• Issues about FAST-iCLIP pipeline

  ChangLab/FAST-iCLIP#35 · Filter by author Zzy190516 opened on Dec 24, 2024

• Can't run example data - error "re-reun with the -g option for a genome file"

  ChangLab/FAST-iCLIP#33 · Filter by author natsampaio opened on Jun 20, 2018
  1

• Can't run the example.

  ChangLab/FAST-iCLIP#32 · Filter by author AmirArgoetti opened on Nov 19, 2017
  1

• FAST-iCLIP/docs/GRCm38/exons.bed has the same start and end coordinate

  ChangLab/FAST-iCLIP#31 · Filter by author Shirleyyyyyy opened on Jul 13, 2017

• Not able to run example

  ChangLab/FAST-iCLIP#30 · Filter by author marencc opened on Jul 4, 2017
  3

• Support cases when there are 0 retroviral reads

  ChangLab/FAST-iCLIP#27 · Filter by author bdo311 opened on Jun 23, 2017

• Bowtie prints out results as "error"

  ChangLab/FAST-iCLIP#26 · Filter by author bdo311 opened on Jun 23, 2017

• problem in provided annotations

  ChangLab/FAST-iCLIP#25 · Filter by author andypohl opened on Jun 22, 2017

• expected output for example?

  ChangLab/FAST-iCLIP#24 · Filter by author andypohl opened on Jun 22, 2017
  6

• fails with samtools >1.3

  ChangLab/FAST-iCLIP#20 · Filter by author dy7t opened on May 1, 2016
  1

• retroviralMapping.py must be exectuded in FAST-iCLIP directory

  ChangLab/FAST-iCLIP#19 · Filter by author EricDeveaud opened on Apr 4, 2016

• motifAnalysis.py can't find docs if executed outside of FAST-iCLIP directory

  ChangLab/FAST-iCLIP#18 · Filter by author EricDeveaud opened on Apr 4, 2016

• ViralGenome_analysis.py can't find docs if executed outside of FAST-iCLIP directory

  ChangLab/FAST-iCLIP#17 · Filter by author EricDeveaud opened on Apr 4, 2016

• missing harcoded docs/mm9/mm9_ensembl_genes_BED6.bed

  ChangLab/FAST-iCLIP#16 · Filter by author EricDeveaud opened on Apr 4, 2016

• exit with value != 0 if err

  ChangLab/FAST-iCLIP#15 · Filter by author EricDeveaud opened on Apr 4, 2016

• installer does not install programs in bin

  ChangLab/FAST-iCLIP#14 · Filter by author EricDeveaud opened on Mar 31, 2016

• install doc does not talk about FASTICLIP_PATH

  ChangLab/FAST-iCLIP#13 · Filter by author EricDeveaud opened on Mar 31, 2016

• make perl configurable

  ChangLab/FAST-iCLIP#12 · Filter by author EricDeveaud opened on Mar 31, 2016

• dos2unix :: dependency not documented

  ChangLab/FAST-iCLIP#11 · Filter by author EricDeveaud opened on Mar 31, 2016

• matplotlib-venn needs to be included in setuptools

  ChangLab/FAST-iCLIP#8 · Filter by author bdo311 opened on Jan 29, 2016

• Move all params to cfg.py

  ChangLab/FAST-iCLIP#5 · Filter by author bdo311 opened on Jan 29, 2016