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Bump version 3.0.0b1 -> 3.0.0b2, add the 3.0.0b2 CHANGELOG section, and update the README status and install notes.
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Release prep for 3.0.0b2.
pyproject.toml: version 3.0.0b1 to 3.0.0b2.CHANGELOG.md: new 3.0.0b2 section, grouped by theme (model I/O, homology and curation, gap-filling and analysis, context-specific models, packaging and docs).release.ymluses this section as the release notes.README.md: status line, release-notes link and install note now refer to 3.0.0b2.Breaking changes listed in the changelog:
fill_gaps_kumar_milpis nowfill_gaps_milp(module and result class renamed,reversed_reactionsandweightsremoved), andomics.hpamoved toinit.hpa.After merging, tag
v3.0.0b2on the merge commit. The release workflow builds the package, checks the version against the tag, publishes to PyPI and creates a GitHub pre-release.The test suite was not run for this change; it only touches version strings and docs.
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