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Prepare 3.0.0b2 release - #177

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edkerk wants to merge 1 commit into
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release/3.0.0b2
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edkerk wants to merge 1 commit into
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release/3.0.0b2

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@edkerk

@edkerk edkerk commented Oct 19, 2026

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Release prep for 3.0.0b2.

  • pyproject.toml: version 3.0.0b1 to 3.0.0b2.
  • CHANGELOG.md: new 3.0.0b2 section, grouped by theme (model I/O, homology and curation, gap-filling and analysis, context-specific models, packaging and docs). release.yml uses this section as the release notes.
  • README.md: status line, release-notes link and install note now refer to 3.0.0b2.

Breaking changes listed in the changelog: fill_gaps_kumar_milp is now fill_gaps_milp (module and result class renamed, reversed_reactions and weights removed), and omics.hpa moved to init.hpa.

After merging, tag v3.0.0b2 on the merge commit. The release workflow builds the package, checks the version against the tag, publishes to PyPI and creates a GitHub pre-release.

The test suite was not run for this change; it only touches version strings and docs.


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Bump version 3.0.0b1 -> 3.0.0b2, add the 3.0.0b2 CHANGELOG section, and update the README status and install notes.

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