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deps: bump leidenalg from 0.11.0 to 0.12.0 - #119

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deps: bump leidenalg from 0.11.0 to 0.12.0#119
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dependabot/uv/leidenalg-0.12.0

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Bumps leidenalg from 0.11.0 to 0.12.0.

Release notes

Sourced from leidenalg's releases.

0.12.0

Add support for minimum community size

Changelog

Sourced from leidenalg's changelog.

0.12.0

  • Update to libleidenalg 0.13.0
    • Brings support for minimum community size
Commits
  • 368a99e Merge pull request #230 from vtraag/feature/comm_size
  • 9136b08 Update to libleidenalg 0.13.0
  • c08884a Merge pull request #229 from vtraag/fix/223
  • 0920b72 Merge pull request #226 from vtraag/dependabot/github_actions/docker/setup-qe...
  • 5a1f4c3 Merge pull request #225 from vtraag/dependabot/github_actions/actions/upload-...
  • 1ffcd34 Merge pull request #224 from vtraag/dependabot/github_actions/actions/downloa...
  • 096cd91 fix: allow 64-bit rng seed
  • 576b482 Merge pull request #228 from vtraag/dependabot/github_actions/pypa/cibuildwhe...
  • 4725c00 Adjust tests
  • e10b500 Improve documentation of functions.
  • Additional commits viewable in compare view

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Bumps [leidenalg](https://github.com/vtraag/leidenalg) from 0.11.0 to 0.12.0.
- [Release notes](https://github.com/vtraag/leidenalg/releases)
- [Changelog](https://github.com/vtraag/leidenalg/blob/main/CHANGELOG)
- [Commits](vtraag/leidenalg@0.11.0...0.12.0)

---
updated-dependencies:
- dependency-name: leidenalg
  dependency-version: 0.12.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added the dependencies Pull requests that update a dependency file label Sep 7, 2026
@dependabot
dependabot Bot requested a review from Cranot as a code owner September 7, 2026 23:26
@github-actions

github-actions Bot commented Sep 8, 2026

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roam-code Analysis

Mode: incremental (changed-only) — base b3447d3d9d0bdd9e2974b4a7be484fb98842c445, 1 changed+dependent files

Health Score: 80/100 HEALTHY

health: Healthy codebase (80/100) — 52 critical issues, focus: god_components
pr-risk: index-stale

Health Metrics

Metric Value
Health Score 80/100
Tangle Ratio 0.5%
Propagation Cost 0.0327
Total Issues 65

PR Risk

Metric Value
Risk Score 0/100

Quality Gate: PASSED

Gate expression: health_score>=50

SARIF Upload

Metric Value
Category roam-code-self-analysis/self-analysis/py3.12
Results Uploaded 117
Full analysis output

health

{
  "_meta": {
    "cache_ttl_s": 300,
    "cacheable": true,
    "index_age_s": 3,
    "index_status": {
      "dirty_files": 0,
      "fresh": false,
      "head_commit": "d50afa14076f",
      "hint": "index latest commit 5f7b131396bf != HEAD d50afa14076f — git-derived metrics (commits, churn, co-change, weather) may be stale. Run `roam index --force`.",
      "indexed_commit": "5f7b131396bf"
    },
    "latency_ms": null,
    "response_tokens": 6215,
    "roam_version": "14.1.0",
    "timestamp": "2026-09-08T00:08:54Z"
  },
  "actionable_count": 13,
  "actionable_cycles": 0,
  "agent_contract": {
    "confidence": null,
    "facts": [
      "Healthy codebase (80/100) — 52 critical issues, focus: god_components",
      "health score 80",
      "tangle ratio 0.5",
      "0.0327 propagation cost findings",
      "issue count 65"
    ],
    "next_commands": [
      "roam debt",
      "roam trends --days 30"
    ],
    "risks": []
  },
  "algebraic_connectivity": null,
  "algebraic_connectivity_available": false,
  "bottleneck_thresholds": {
    "list_limit": 15,
    "p70": 34196.1,
    "p90": 146021.5,
    "population": 3334,
    "utility_multiplier": 1.5
  },
  "category_severity": {
    "bottlenecks": {
      "critical": 15,
      "info": 0,
      "warning": 0
    },
    "cycles": {
      "critical": 0,
      "info": 0,
      "warning": 0
    },
    "god_components": {
      "critical": 37,
      "info": 5,
      "warning": 8
    },
    "layer_violations": {
      "critical": 0,
      "info": 0,
      "warning": 0
    }
  },
  "command": "health",
  "cycles_actionable": 0,
  "cycles_total": 52,
  "framework_filtered": 0,
  "god_component_thresholds": {
    "list_limit": 50,
    "min_degree": 20,
    "population": 410
  },
  "health_score": 80,
  "ignored_cycles": 52,
  "imported_coverable_lines": 0,
  "imported_coverage_files": 0,
  "imported_coverage_pct": null,
  "imported_covered_lines": 0,
  "index_status": {
    "dirty_files": 0,
    "fresh": false,
    "head_commit": "d50afa14076f",
    "hint": "index latest commit 5f7b131396bf != HEAD d50afa14076f — git-derived metrics (commits, churn, co-change, weather) may be stale. Run `roam index --force`.",
    "indexed_commit": "5f7b131396bf"
  },
  "issue_count": 65,
  "list_counts": {
    "bottlenecks": 15,
    "cycle_break_suggestions": 0,
    "cycles": 52,
    "god_components": 50,
    "layer_violations": 0,
    "next_steps": 2,
    "score_breakdown": 5
  },
  "project": "roam-code",
  "propagation_cost": 0.0327,
  "schema": "roam-envelope-v1",
  "schema_version": "1.2.0",
  "severity": {
    "critical": 52,
    "info": 57,
    "warning": 8
  },
  "summary": {
    "actionable_cycles": 0,
    "algebraic_connectivity": null,
    "algebraic_connectivity_available": false,
    "category_severity": {
      "bottlenecks": {
        "critical": 15,
        "info": 0,
        "warning": 0
      },
      "cycles": {
        "critical": 0,
        "info": 0,
        "warning": 0
      },
      "god_components": {
        "critical": 37,
        "info": 5,
        "warning": 8
      },
      "layer_violations": {
        "critical": 0,
        "info": 0,
        "warning": 0
      }
    },
    "cycles_actionable": 0,
    "cycles_definition": "Cycle counts derived from `roam.graph.cycles.find_cycles(G, min_size=2)` on the symbol graph. `cycles_total` = all SCCs of size >= 2; `cycles_actionable` = SCCs spanning >=2 files AND no test files (same-file and test-only cycles are informational). Run `roam health` for the per-cycle breakdown.",
    "cycles_total": 52,
    "detail_available": true,
    "god_components": 50,
    "god_components_definition": "God components: symbols where `(in_degree + out_degree) > 20` from the `graph_metrics` table, with utility-aware severity bands (standard >50=CRITICAL >30=WARNING; utility >150=CRITICAL >90=WARNING). Run `roam health` for the per-symbol breakdown. Legacy aliases: `god_objects` (fingerprint), `god_classes` (rules).",
    "health_score": 80,
    "health_score_definition": "weighted geometric mean (0-100) of 5 sigmoid health factors: tangle_ratio, god_components, bottlenecks, layer_violations, file_health (+coverage if available); computed by roam.quality.health_score.compute_health_score, shared verbatim with the `snapshots` writer so `roam health --baseline` compares like with like.",
    "ignored_cycles": 52,
    "imported_coverage_files": 0,
    "imported_coverage_pct": null,
    "issue_count": 65,
    "partial_success": true,
    "preserved_list_truncations": {},
    "propagation_cost": 0.0327,
    "severity": {
      "critical": 52,
      "info": 57,
      "warning": 8
    },
    "tangle_ratio": 0.5,
    "tangle_ratio_definition": "percent of symbols inside non-trivial SCCs (size >= 2), counting ALL such SCCs, not just actionable ones; higher = more cyclic coupling. `roam fingerprint` reports the identical measurement as a fraction (percent / 100).",
    "total_cycles": 52,
    "truncated": true,
    "truncation_reason": "detail_mode",
    "verdict": "Healthy codebase (80/100) — 52 critical issues, focus: god_components",
    "warnings_out": [
      "health_algebraic_connectivity_warning:RuntimeWarning:algebraic_connectivity compute failed (ModuleNotFoundError): No module named 'numpy'; returning 0.0 sentinel — value is NOT a legitimate disconnected-graph reading",
      "health_god_components_list_capped:showing_top_50_of_410",
      "health_bottlenecks_list_capped:showing_top_15_of_3334"
    ]
  },
  "tangle_ratio": 0.5,
  "total_cycles": 52,
  "utility_count": 37,
  "version": "14.1.0",
  "warnings_out": [
    "health_algebraic_connectivity_warning:RuntimeWarning:algebraic_connectivity compute failed (ModuleNotFoundError): No module named 'numpy'; returning 0.0 sentinel — value is NOT a legitimate disconnected-graph reading",
    "health_god_components_list_capped:showing_top_50_of_410",
    "health_bottlenecks_list_capped:showing_top_15_of_3334"
  ]
}

pr-risk

{
  "_meta": {
    "cache_ttl_s": 60,
    "cacheable": true,
    "index_age_s": 3,
    "index_status": {
      "dirty_files": 0,
      "fresh": false,
      "head_commit": "d50afa14076f",
      "hint": "index latest commit 5f7b131396bf != HEAD d50afa14076f — git-derived metrics (commits, churn, co-change, weather) may be stale. Run `roam index --force`.",
      "indexed_commit": "5f7b131396bf"
    },
    "latency_ms": null,
    "response_tokens": 231,
    "roam_version": "14.1.0",
    "timestamp": "2026-09-08T00:08:54Z"
  },
  "agent_contract": {
    "confidence": null,
    "facts": [
      "index-stale",
      "risk score 0",
      "1 risk rank findings"
    ],
    "next_commands": [],
    "risks": []
  },
  "command": "pr-risk",
  "message": "Changed files not found in index. Run `roam index` first.",
  "project": "roam-code",
  "schema": "roam-envelope-v1",
  "schema_version": "1.2.0",
  "summary": {
    "hint": "Changed files not in index — run `roam index`.",
    "partial_success": false,
    "risk_level": "low",
    "risk_level_canonical": "low",
    "risk_rank": 1,
    "risk_score": 0,
    "verdict": "index-stale"
  },
  "version": "14.1.0"
}

roam-code analysis | Commands: health pr-risk

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