Allow multiple barcode segments (e.g. split-seq) - #75

Draft

ChangqingW wants to merge 10 commits into

DavidsonGroup:mainfrom

ChangqingW:feat-multi-bc

Commits on Jan 16, 2026

change to thread safe queue
ChangqingW
committed
e122cc1
allow multiple barcode / umi
ChangqingW
committed
f14b99d
trim off multi-matching bits; better UMI locations
ChangqingW
committed
a842fad

Commits on Jan 19, 2026

add splitted barcode support
ChangqingW
committed
453e914

Commits on Jan 22, 2026

split extract_features into more functions
ChangqingW
committed
93ba28c
Add discovery mode for split barcode
ChangqingW
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9e1cfa2
Add writer thread
ChangqingW
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cecf8e2

Commits on Jan 23, 2026

formatting, misc
ChangqingW
committed
a406bc5

Commits on Feb 4, 2026

keep output order, move all barcodes to CB
ChangqingW
committed
617ea7d
WIP: perfer match with samller wiggle
ChangqingW
committed
267d806