All issues

Search results

CI workflow is stale: pinned to Nextflow 23.10.1, manual-trigger only

Status: Open.

#148 In Eco-Flow/excon;

· chriswyatt1 opened on Sep 19, 2026

CAFE further statistics wish list

Status: Open.

#147 In Eco-Flow/excon;

· chriswyatt1 opened on Sep 16, 2026

Allow flexibility in "single copy" ortholog retention

Status: Open.

#146 In Eco-Flow/excon;

· chriswyatt1 opened on Sep 16, 2026

Transposable element filtering

Status: Open.

#145 In Eco-Flow/excon;

· chriswyatt1 opened on Sep 16, 2026

KEGG support

Status: Open.

#144 In Eco-Flow/excon;

· chriswyatt1 opened on Sep 16, 2026

Enable BUSCO filtering

Status: Open.

#143 In Eco-Flow/excon;

· chriswyatt1 opened on Sep 16, 2026

Add iqtree3 support for fossil dated nodes

Status: Open.

#142 In Eco-Flow/excon;

· chriswyatt1 opened on Sep 16, 2026

Include Genome-Error model, proteins as input, offline mode?

Status: Open.

#140 In Eco-Flow/excon;

· desmodus1984 opened on Aug 4, 2026

Report on genome completeness alongside CAFE results

suggestionAn suggested change, but not essentialAn suggested change, but not essential

Status: Open.

#129 In Eco-Flow/excon;

· chriswyatt1 opened on Apr 9, 2026