All pull requests

Pull requests

• CRT QQ plot: square axes, gray null, dashed diagonal, 14 pt font

  #21·OlgaPushkarev opened Oct 13, 2026·

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• Support non-perturbed scRNA-seq and mouse data

  #20·OlgaPushkarev opened Oct 10, 2026·

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• Format all Python files with ruff (format-only)

  #19·OlgaPushkarev opened Oct 10, 2026·

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• Remove remaining lab- and study-specific content

  #18·OlgaPushkarev opened Oct 10, 2026·

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• CRT: option to sample NTC null groups with replacement (as SCEPTRE does)

  #16·maggiesychen opened Sep 30, 2026·

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• Fix stale tests and empty significant-programs crash

  #15·engreitz opened Sep 29, 2026Contributor·

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• CRT: fixed-count resampling option; skew-normal p for the NTC null

  #13·engreitz opened Sep 27, 2026Contributor·

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• Release per-iteration mdata copies in compute_fake_perturbation_tests

  #5·adamklie opened May 10, 2026·

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• Fix args.reference_targets AttributeError in U-test fake-test path

  #4·adamklie opened May 10, 2026·3 tasks·

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