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nanometa_live
nanometa_live PublicA streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineered for precision, speed, and user-friendliness, with offline …
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metadarkmatter
metadarkmatter PublicDetect novel bacterial taxa in metagenomic data using ANI-weighted placement uncertainty. Distinguishes true novelty from taxonomic ambiguity by combining competitive read recruitment with genome-g…
Python 2
Repositories
- nanometa_live Public
A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineered for precision, speed, and user-friendliness, with offline functionality post-initialization.
- metaquest Public
MetaQuest is a robust and user-friendly command-line toolkit designed to simplify and streamline the analysis of metagenomic data. From summarizing the presence of specific genomes to visualizing complex datasets, MetaQuest offers an array of tools to help researchers uncover insights from their metagenomic datasets.
- tessera Public
Recombination detection for viral and microbial genomes: builds a reference panel, scans a query with parent-attributed and parent-free methods, and reports mosaic structure with typed lineages and breakpoints.
- metadarkmatter Public
Detect novel bacterial taxa in metagenomic data using ANI-weighted placement uncertainty. Distinguishes true novelty from taxonomic ambiguity by combining competitive read recruitment with genome-genome ANI matrices. Species/genus classification with literature-backed thresholds.
- preprimer Public
Prepare primers from different formats, i.e. schemes for tiled sequencing from varvamp to artic format. Also prepares and aligns primers with mepcr or exonerate.
- taxbencher Public
taxbencher: A Nextflow framework for benchmarking metagenomic taxonomic classifiers and profilers.
- neoswga Public
- flextaxd Public
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
- nanorunner Public
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