Repository navigation

feat: Phase-field chemo-(poro)mechanics - #3945

Draft

frankfeifan wants to merge 194 commits into

developfrom

feat/frankfei/phaseFieldChemoMechanics

Draft

feat: Phase-field chemo-(poro)mechanics #3945
frankfeifan wants to merge 194 commits into
developfrom
feat/frankfei/phaseFieldChemoMechanics

Commits on Mar 14, 2025
Commits on Mar 18, 2025
- added diffusion
  frankfeifan
  committed
  23de93c
- Merge remote-tracking branch 'origin/develop' into feature/frankfei/singlePhaseReactiveTransport
  frankfeifan
  committed
  5b8ffb2
- resolve merge conflict for logLevel issue
  frankfeifan
  committed
  253cf71
Commits on Mar 28, 2025
- enabled thermal and fixed a few bugs
  frankfeifan
  committed
  39b6098
- Merge remote-tracking branch 'origin/develop' into feature/frankfei/singlePhaseReactiveTransport
  frankfeifan
  committed
  b0b7826
Commits on Apr 2, 2025
- feat: add HPCReact as a submodule
  CusiniM
  committed
  2b25ae8
- Remove old Reactive fluid.
  CusiniM
  committed
  4c3890b
Commits on Apr 3, 2025
- finally compiles
  CusiniM
  committed
  d61e980
Commits on Apr 5, 2025
- added dispatch.
  CusiniM
  committed
  9e9b518
Commits on Apr 9, 2025
- Merge remote-tracking branch 'origin/develop' into feature/frankfei/singlePhaseReactiveTransport
  frankfeifan
  committed
  f7dea2a
Commits on Apr 10, 2025
- Merge remote-tracking branch 'origin/cusini/single-phase-reactivefluid' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  7b1a758
Commits on Apr 14, 2025
- changed the names of some fields
  frankfeifan
  committed
  d04535b
- Merge branch 'feature/frankfei/singlePhaseReactiveTransport' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  5ef97f2
Commits on Apr 24, 2025
Commits on May 19, 2025
- Merge remote-tracking branch 'origin/develop' into cusini/single-phase-reactivefluid
  CusiniM
  committed
  85f8184
- interface with mixedSystem.
  CusiniM
  committed
  38a649e
Commits on May 20, 2025
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  bfa4f4e
Commits on May 22, 2025
- Merge remote-tracking branch 'origin/cusini/single-phase-reactivefluid' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  44de8ae
- enable mixed system update
  frankfeifan
  committed
  98965ab
Commits on May 28, 2025
- change the layout and rename some concentration arrays
  frankfeifan
  committed
  776bab0
- enable mixed system update
  frankfeifan
  committed
  de8841b
- HPCReact update
  frankfeifan
  committed
  3aab47e
- added a unit test
  frankfeifan
  committed
  668beb2
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  cbece00
Commits on May 29, 2025
Commits on Jun 1, 2025
- HPCReact
  frankfeifan
  committed
  4a65e5e
- enabled ultramafic and avoided hard coding
  frankfeifan
  committed
  f816f92
Commits on Jun 2, 2025
- update hpcReact commit.
  CusiniM
  committed
  1004013
Commits on Jun 3, 2025
- fix compilation error.
  CusiniM
  committed
  f5025ee
Commits on Jun 4, 2025
Commits on Jun 7, 2025
- added some checks if using the reactive porosity model
  frankfeifan
  committed
  c6a1a42
Commits on Jun 16, 2025
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  d2c3896
- added source b.c.
  frankfeifan
  committed
  8d5f229
Commits on Jun 19, 2025
- update HPCReact version.
  CusiniM
  committed
  02f4e5b
- Fixes for new hpcReact branch.
  CusiniM
  committed
  bf9bf47
Commits on Jun 20, 2025
- latest hpcReact commit.
  CusiniM
  committed
  5615c39
- to update number of primary after adding the surface reaction in HPCReact
  frankfeifan
  committed
  bf6a9e0
Commits on Jun 28, 2025
- added surfaceArea update
  frankfeifan
  committed
  6ed29d0
- updated 1D tests
  frankfeifan
  committed
  84bb91d
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  9652aa0
Commits on Jul 15, 2025
Commits on Aug 1, 2025
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  a569416
Commits on Aug 5, 2025
- HPCReact updated
  frankfeifan
  committed
  6f7c4bf
- changed to use new enforce equilibrium function and updated xmls
  frankfeifan
  committed
  fd8fc41
Commits on Aug 12, 2025
- fixed build with HPCReact
  frankfeifan
  committed
  163cddc
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  c54ce5a
Commits on Aug 13, 2025
- fix for CUDA build
  frankfeifan
  committed
  e484544
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  4b3b7ca
- fixed b.c. for momas and clean up xmls.
  frankfeifan
  committed
  d29bfa2
- change in hpcreact
  frankfeifan
  committed
  24c12dd
Commits on Aug 15, 2025
- try to solve some compile errors
  frankfeifan
  committed
  25dca54
Commits on Aug 16, 2025
- addded both advective and diffusive cases
  frankfeifan
  committed
  90d3e52
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  7fb15bc
Commits on Aug 26, 2025
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  da310fe
- fixed logInfo
  frankfeifan
  committed
  7f2acbf
Commits on Aug 27, 2025
- added initial primary species array and cleaned up xmls
  frankfeifan
  committed
  2f12d37
Commits on Sep 3, 2025
- updated HPCReact
  frankfeifan
  committed
  5096026
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  0d33a94
Commits on Sep 12, 2025
Commits on Sep 28, 2025
Commits on Oct 1, 2025
- link to HPCReact
  frankfeifan
  committed
  872efc3
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  1fffddd
Commits on Oct 22, 2025
- clean up for momas inputs and changed back for kinetic reaction term
  frankfeifan
  committed
  31caa2a
- added generic chain reaction all kinetic case
  frankfeifan
  committed
  ead476d
- revised unit test
  frankfeifan
  committed
  280902b
- uncrustify
  frankfeifan
  committed
  9e25f3b
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  fce0003
Commits on Oct 23, 2025
- attempted workaround for cuda error
  rrsettgast
  committed
  7945028
Commits on Oct 24, 2025
- fix cuda compile issues
  rrsettgast
  committed
  78e4f45
- fix compile
  frankfeifan
  committed
  1671d9f
Commits on Oct 29, 2025
- initial chemomechanics coupling and an 1D example for simple testing
  frankfeifan
  committed
  7ddb0a8
Commits on Oct 31, 2025
- updated HPCReact
  frankfeifan
  committed
  99b56dd
Commits on Nov 3, 2025
- added a sourceFlux kernel to fix cuda issue
  frankfeifan
  committed
  67aba0b
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  74455cf
- fixed uninitialized
  frankfeifan
  committed
  4c6f985
Commits on Nov 4, 2025
- use the local value in the loop
  frankfeifan
  committed
  8038422
Commits on Nov 11, 2025
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  716d5c7
Commits on Nov 13, 2025
- Merge remote-tracking branch 'origin/feature/singlePhaseReactiveTransportWithHPCReact' into feat/frankfei/reactiveTransportMechanicsCoupling
  frankfeifan
  committed
  2d6074e
Commits on Nov 26, 2025
Commits on Dec 8, 2025
- Merge remote-tracking branch 'origin/develop' into feature/singlePhaseReactiveTransportWithHPCReact
  frankfeifan
  committed
  2719510
Commits on Dec 9, 2025
- Merge remote-tracking branch 'origin/feature/singlePhaseReactiveTransportWithHPCReact' into feat/frankfei/reactiveTransportMechanicsCoupling
  frankfeifan
  committed
  7eeaa1a
Commits on Dec 10, 2025
Commits on Dec 22, 2025
Commits on Dec 23, 2025
- disable doxygen in HPCReact if it is a submodule
  rrsettgast
  committed
  ae29463
- HPCReact update
  frankfeifan
  committed
  f4bfa16
- HPCReact update
  frankfeifan
  committed
  93164c2
- Merge branch 'feature/singlePhaseReactiveTransportWithHPCReact' into feat/frankfei/reactiveTransportMechanicsCoupling
  frankfeifan
  committed
  903b322
Commits on Jan 7, 2026
- initial try to add eigenstrain and poromechanics models for chemomechanics coupling
  frankfeifan
  committed
  990bb46
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/reactiveTransportMechanicsCoupling
  frankfeifan
  committed
  145d37a
Commits on Jan 23, 2026
Commits on Jan 31, 2026
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/reactiveTransportMechanicsCoupling
  frankfeifan
  committed
  861b0ab
Commits on Feb 1, 2026
- cleaned up xmls and added case with varying surface areas
  frankfeifan
  committed
  699cdb4
Commits on Feb 26, 2026
Commits on Mar 9, 2026
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/reactiveTransportMechanicsCoupling
  frankfeifan
  committed
  13eefc1
- clean up and fix a bug
  frankfeifan
  committed
  e561b7d
Commits on Mar 10, 2026
- Updated time step even manager to handle very small time steps without blowing up out of range the ratio
  azibitsker
  committed
  6fd144e
- Merge branch 'feat/frankfei/reactiveTransportMechanicsCoupling' of github.com:GEOS-DEV/GEOS into feat/frankfei/reactiveTransportMechanicsCoupling
  azibitsker
  committed
  0066183
Commits on Mar 14, 2026
- switch from molarity concentration to molality
  frankfeifan
  committed
  0a5f798
Commits on Mar 16, 2026
- make the timestep in unit test smaller as the jacobian is very sensitive to that
  frankfeifan
  committed
  befd8a9
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/molalityConcentration
  frankfeifan
  committed
  243c99c
Commits on Mar 17, 2026
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/reactiveTransportMechanicsCoupling
  frankfeifan
  committed
  a64461e
- spliregions for chemomechanics and pure solid mechanics
  frankfeifan
  committed
  51c46bd
Commits on Mar 30, 2026
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/reactiveTransportMechanicsCoupling
  frankfeifan
  committed
  3dfd564
- Merge remote-tracking branch 'origin/feat/frankfei/reactiveTransportMechanicsCoupling' into feat/frankfei/phaseFieldChemoMechanics
  frankfeifan
  committed
  6f426ac
Commits on Apr 3, 2026
- fix merge
  frankfeifan
  committed
  e33c8a7
- enable damage perm model
  frankfeifan
  committed
  fdd0dc3
- hard code to use crack driving force from spectral decomposition while keep the stress the same
  frankfeifan
  committed
  3571597
Commits on Apr 8, 2026
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/phaseFieldChemoMechanics
  frankfeifan
  committed
  8148a27
- addded damage perm to eigenstrain model
  frankfeifan
  committed
  a428163
Commits on Apr 16, 2026
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/phaseFieldChemoMechanics
  frankfeifan
  committed
  122bf05
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/reactiveTransportMechanicsCoupling
  frankfeifan
  committed
  43a4942
Commits on May 2, 2026
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/phaseFieldChemoMechanics
  frankfeifan
  committed
  56717b2
Commits on May 16, 2026
- Merge remote-tracking branch 'origin/feat/frankfei/molalityConcentration' into feat/frankfei/phaseFieldChemoMechanics
  frankfeifan
  committed
  24ed2a8
Commits on May 29, 2026
Commits on Jun 8, 2026
Commits on Jun 26, 2026
- added damage diffusivity
  frankfeifan
  committed
  d5e0c37
Commits on Jul 2, 2026
Commits on Jul 17, 2026
- applied degradation on the biot coeff as well
  frankfeifan
  committed
  2823877
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/phaseFieldChemoMechanics
  frankfeifan
  committed
  c13810f
Commits on Aug 31, 2026
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/molalityConcentration
  frankfeifan
  committed
  a36c649
Commits on Sep 1, 2026
Commits on Sep 2, 2026
Commits on Sep 5, 2026
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/molalityConcentration
  frankfeifan
  committed
  82ecf46
- No plot for some field variables
  frankfeifan
  committed
  5611172
Commits on Sep 6, 2026
- rebaseline
  frankfeifan
  committed
  ba33803
Commits on Sep 10, 2026
Commits on Sep 14, 2026
- Merge branch 'develop' into feat/frankfei/molalityConcentration
  frankfeifan
  authored
  f7e3384
Commits on Sep 15, 2026
- fixed 1D chain reaction run and added to integrated test
  frankfeifan
  committed
  9fb8b70
- enable spectral damage model and enforce fluidModel input
  frankfeifan
  committed
  44a48cf
Commits on Sep 16, 2026
- Merge branch 'develop' into feat/frankfei/molalityConcentration
  OmarDuran
  authored
  4b79f89
Commits on Sep 17, 2026
- wip: fix some typos
  OmarDuran
  committed
  22a8a6f
- applied Omar's suggestions
  frankfeifan
  committed
  718fc69
Commits on Sep 20, 2026
- Merge remote-tracking branch 'origin/develop' into feat/frankfei/molalityConcentration
  frankfeifan
  committed
  f85d9ca
- rebaseline
  frankfeifan
  committed
  83fe1cd
Commits on Oct 20, 2026
Commits on Oct 21, 2026
- enable spectral with hybrid method
  frankfeifan
  committed
  f14e690
Commits on Oct 28, 2026
- remove fluid compressibility, fixed inelastic strain, and switch to fixed-stress
  frankfeifan
  committed
  bb075e1
- modify serpentinization
  frankfeifan
  committed
  44a32f7
- add CK model
  frankfeifan
  committed
  91dd3f5
- left over for fluid model removal
  frankfeifan
  committed
  e3e979d
Commits on Oct 29, 2026
- add crack porosity and pore mineralization example
  frankfeifan
  committed
  955d5f5

Commits

Commits on Mar 14, 2025

Commits on Mar 18, 2025

Commits on Mar 28, 2025

Commits on Apr 2, 2025

Commits on Apr 3, 2025

Commits on Apr 5, 2025

Commits on Apr 9, 2025

Commits on Apr 10, 2025

Commits on Apr 14, 2025

Commits on Apr 24, 2025

Commits on May 19, 2025

Commits on May 20, 2025

Commits on May 22, 2025

Commits on May 28, 2025

Commits on May 29, 2025

Commits on Jun 1, 2025

Commits on Jun 2, 2025

Commits on Jun 3, 2025

Commits on Jun 4, 2025

Commits on Jun 7, 2025

Commits on Jun 16, 2025

Commits on Jun 19, 2025

Commits on Jun 20, 2025

Commits on Jun 28, 2025

Commits on Jul 15, 2025

Commits on Aug 1, 2025

Commits on Aug 5, 2025

Commits on Aug 12, 2025

Commits on Aug 13, 2025

Commits on Aug 15, 2025

Commits on Aug 16, 2025

Commits on Aug 26, 2025

Commits on Aug 27, 2025

Commits on Sep 3, 2025

Commits on Sep 12, 2025

Commits on Sep 28, 2025

Commits on Oct 1, 2025

Commits on Oct 22, 2025

Commits on Oct 23, 2025

Commits on Oct 24, 2025

Commits on Oct 29, 2025

Commits on Oct 31, 2025

Commits on Nov 3, 2025

Commits on Nov 4, 2025

Commits on Nov 11, 2025

Commits on Nov 13, 2025

Commits on Nov 26, 2025

Commits on Dec 8, 2025