High Content Genomics & Bioinformatics - Germans Trias i Pujol Research Institute

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1. XICRA XICRA Public

   Small RNAseq pipeline for paired-end reads

   Python 9 3

2. spaTyper spaTyper Public

   Forked from mjsull/spa_typing

   Computational method for finding spa types.

   Python 9 2

3. HCGB.IGTP.DAnalysis HCGB.IGTP.DAnalysis Public

   Differential expression/methylation analysis for several platform and techniques

   R 4 1

4. BacterialTyper BacterialTyper Public

   Bacterial identification pipeline

   Python 3

5. HCVgenotool HCVgenotool Public

   Genotyping tool to assess HCV genetic diversity (genotype and subtype) from NGS data.

   Python 2 1

6. islandpath islandpath Public

   Forked from brinkmanlab/islandpath

   IslandPath standalone software

   Perl 1