style.yaml

Workflow runs for style.yaml

• Merge branch 'generate_stat_plot' of https://github.com/JRaviLab/amRd…

  completed successfully:
  style.yaml#87:Commit3b41fccpushedbyAbhirupaGhosh
  generate_stat_plot

  Jul 28, 20261m 14s
  More actions for workflow run 87

• Add AMR summary report for Staphylococcus argenteus

  completed successfully:
  style.yaml#86:Commitf7cd204pushedbyAbhirupaGhosh
  generate_stat_plot

  Jul 28, 20261m 36s
  More actions for workflow run 86

• update summary/plot functions

  completed successfully:
  style.yaml#85:Commit9a6e193pushedbyjananiravi
  generate_stat_plot

  Jul 27, 20261m 59s
  More actions for workflow run 85

• rename functions

  completed successfully:
  style.yaml#84:Commitec6209fpushedbyjananiravi
  qc_filtering

  Jul 27, 20261m 32s
  More actions for workflow run 84

• Merge pull request #32 from JRaviLab/readme_desc_fixes

  completed successfully:
  style.yaml#83:Commit201a301pushedbyjananiravi
  main

  Jul 24, 20265m 22s
  More actions for workflow run 83

• Add McKim author; update README and URLs

  completed successfully:
  style.yaml#82:Commit4002b04pushedbyjananiravi
  readme_desc_fixes

  Jul 24, 20264m 25s
  More actions for workflow run 82

• Genome download updates in data_curation.R

  completed successfully:
  style.yaml#81:Commitee3e0e4pushedbyepbrenner
  qc_filtering

  Jul 24, 20261m 25s
  More actions for workflow run 81

• Patching ref_file_path parameter check

  completed successfully:
  style.yaml#80:Commiteec360fpushedbyepbrenner
  qc_filtering

  Jul 23, 20261m 20s
  More actions for workflow run 80

• Swapping BiocParallel back to Future

  completed successfully:
  style.yaml#79:Commitb0de152pushedbyepbrenner
  qc_filtering

  Jul 22, 20261m 43s
  More actions for workflow run 79

• Fixing helper function bug

  completed successfully:
  style.yaml#78:Commit5761630pushedbyepbrenner
  qc_filtering

  Jul 22, 20261m 28s
  More actions for workflow run 78

• Add more genome quality filters to data_curation.R

  completed successfully:
  style.yaml#77:Commitee9bfcbpushedbyepbrenner
  qc_filtering

  Jul 22, 20263m 52s
  More actions for workflow run 77

• Merge pull request #29 from JRaviLab/add-genome-list-input

  completed successfully:
  style.yaml#76:Commit5e6cf36pushedbyAbhirupaGhosh
  main

  Jul 10, 20264m 34s
  More actions for workflow run 76

• Add regression test for genome_id_file pass-through

  completed successfully:
  style.yaml#75:Commitcc23cf8pushedbyeboyer221
  add-genome-list-input

  Jul 10, 20261m 12s
  More actions for workflow run 75

• Pass genome_id_file through prepareGenomes() to retrieveMetadata()

  completed successfully:
  style.yaml#74:Commit815c7b9pushedbyeboyer221
  add-genome-list-input

  Jul 10, 20264m 49s
  More actions for workflow run 74

• Update amRdataPlots.R

  completed successfully:
  style.yaml#73:Commit6e86396pushedbyAbhirupaGhosh
  generate_stat_plot

  Jul 1, 20261m 41s
  More actions for workflow run 73

• Update amRdataPlots.R

  completed successfully:
  style.yaml#72:Commit48466d0pushedbyAbhirupaGhosh
  generate_stat_plot

  Jun 30, 20261m 12s
  More actions for workflow run 72

• Merge branch 'main' into generate_stat_plot

  completed successfully:
  style.yaml#71:Commitd9b39d1pushedbyAbhirupaGhosh
  generate_stat_plot

  Jun 30, 20265m 33s
  More actions for workflow run 71

• Fix genome_id_file parameter in prepareGenomes

  completed successfully:
  style.yaml#70:Commitaa2ace5pushedbyAbhirupaGhosh
  add-genome-list-input

  Jun 24, 20266m 43s
  More actions for workflow run 70

• Enhance retrieveMetadata() with genome list file input option

  completed successfully:
  style.yaml#69:Commitf489be6pushedbyAbhirupaGhosh
  add-genome-list-input

  Jun 24, 20261m 18s
  More actions for workflow run 69

• Merge pull request #18 from JRaviLab/add-hmmer

  completed successfully:
  style.yaml#68:Commit6a1fb24pushedbyAbhirupaGhosh
  main

  Jun 23, 20261m 39s
  More actions for workflow run 68

• Mark BVBRC_stats vignette Docker chunks eval=FALSE to fix CI

  completed successfully:
  style.yaml#67:Commit523e10bpushedbyeboyer221
  fix-bvbrc-vignette-eval

  Jun 11, 20261m 59s
  More actions for workflow run 67

• Merge main into add-hmmer; migrate runHMMER to BiocParallel; mark .pa…

  completed successfully:
  style.yaml#66:Commit5af62a0pushedbyeboyer221
  add-hmmer

  Jun 11, 20261m 47s
  More actions for workflow run 66

• Refactor genome_id references in amRdataPlots.R

  completed successfully:
  style.yaml#65:Commit99f8066pushedbyAbhirupaGhosh
  generate_stat_plot

  Jun 4, 20261m 58s
  More actions for workflow run 65

• Map features to cluster (#25)

  completed successfully:
  style.yaml#64:Commit0dc1126pushedbycharmvang
  main

  Jun 3, 20261m 39s
  More actions for workflow run 64

• Split cleanData and add Parquet exports (#11)

  completed successfully:
  style.yaml#63:Commit8a8a472pushedbyeboyer221
  main

  Jun 2, 20261m 42s
  More actions for workflow run 63