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Add function for feature prioritization - #17

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AbhirupaGhosh wants to merge 43 commits into

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feature_rescoring_simple

Open

Add function for feature prioritization#17
AbhirupaGhosh wants to merge 43 commits into
mainfrom
feature_rescoring_simple

Commits on Mar 13, 2026
- Add computeFeatureImprovement function for feature analysis
  AbhirupaGhosh
  authored
  8d6f2f4
- Style code (GHA)
  AbhirupaGhosh
  committed
  729c837
Commits on Mar 23, 2026
- Implement computeFeatureScore function for feature scoring
  AbhirupaGhosh
  authored
  62668b4
- Style code (GHA)
  AbhirupaGhosh
  committed
  a388841
Commits on Jul 22, 2026
- Update feature_rescoring.R
  AbhirupaGhosh
  committed
  4098ed6
- Update feature_rescoring.R
  AbhirupaGhosh
  committed
  82964cc
- Refactor feature scoring functions and enhance documentation for clarity
  AbhirupaGhosh
  committed
  b356109
Commits on Jul 23, 2026
Commits on Jul 24, 2026
Commits on Jul 28, 2026
- Merge branch 'main' into feature_rescoring_simple
  AbhirupaGhosh
  authored
  9723262
- Add example data and remove old, unused data
  AbhirupaGhosh
  committed
  b8f45b1
- Refactor feature naming and network functions
  jananiravi
  committed
  49141ea
- Update feature_rescoring.R
  jananiravi
  committed
  b21796f
Commits on Aug 5, 2026
- Modified feature rescoring, network build, and docs
  jananiravi
  committed
  ad66bf8
Commits on Aug 11, 2026
- Enhance feature summarization by adding mean and median cumulative contributions, and ensure consistency checks for core membership and sign.
  AbhirupaGhosh
  committed
  6282481
- Enhance feature scoring by adding coefficient of variation and refining core membership checks
  AbhirupaGhosh
  committed
  6d7d320
Commits on Aug 12, 2026
- add function to filter optimal models
  AbhirupaGhosh
  committed
  4275dfd
- add new filtering strategies to obtain top features.
  AbhirupaGhosh
  committed
  84ff286
Commits on Aug 13, 2026
- add the model filter option in feature scoring
  AbhirupaGhosh
  committed
  c03184d
- update feature scoring within seed
  AbhirupaGhosh
  committed
  30f7532
Commits on Aug 14, 2026
- add sparsity_score
  AbhirupaGhosh
  committed
  e683b6d
- Update the contribution
  AbhirupaGhosh
  committed
  c022ff0
Commits on Aug 17, 2026
- documentation fixes
  jananiravi
  committed
  0a8aea0
Commits on Aug 19, 2026
- Update feature_rescoring.R
  AbhirupaGhosh
  committed
  5c6f801
- Merge branch 'feature_rescoring_simple' of https://github.com/JRaviLab/amRml into feature_rescoring_simple
  AbhirupaGhosh
  committed
  a8abc24
Commits on Aug 31, 2026
- Add validation for 'shuffled' column in filterOptimalModel function
  AbhirupaGhosh
  committed
  1a59522
Commits on Sep 4, 2026
- Update feature_rescoring.R
  AbhirupaGhosh
  committed
  fd90de3
Commits on Sep 9, 2026
- Update feature_rescoring.R
  AbhirupaGhosh
  committed
  bb89102
Commits on Sep 10, 2026
- Modified the feature rescoring functions to work with dyads instead of clusters. This involved changing the function names and updating the documentation accordingly. The changes also include updat…
  AbhirupaGhosh
  committed
  05a5f1b
- Update the documentation
  AbhirupaGhosh
  committed
  4316a2d
Commits on Sep 17, 2026
- Update feature_rescoring.R
  AbhirupaGhosh
  committed
  5225caf
- fix(topFeaturesPerDrugOrClass): compute rank_score_quantile per drug/class instead of globally, so low-signal drugs aren't crowded out; update docs to match
  AbhirupaGhosh
  committed
  84667a3
- Update documentation
  AbhirupaGhosh
  committed
  64201a3
- Add runFeatureDyadDiscovery function.
  AbhirupaGhosh
  committed
  bb36bbe
- Update feature_rescoring.R
  AbhirupaGhosh
  committed
  8ed3410
- Update feature_rescoring.R
  AbhirupaGhosh
  committed
  387fd16
- Merge branch 'main' into feature_rescoring_simple
  AbhirupaGhosh
  authored
  c434b6b

Commits

Commits on Mar 13, 2026

Commits on Mar 23, 2026

Commits on Jul 22, 2026

Commits on Jul 23, 2026

Commits on Jul 24, 2026

Commits on Jul 28, 2026

Commits on Aug 5, 2026

Commits on Aug 11, 2026

Commits on Aug 12, 2026

Commits on Aug 13, 2026

Commits on Aug 14, 2026

Commits on Aug 17, 2026

Commits on Aug 19, 2026

Commits on Aug 31, 2026

Commits on Sep 4, 2026

Commits on Sep 9, 2026

Commits on Sep 10, 2026

Commits on Sep 17, 2026