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Feature rescoring module and outputting merged results and model fits - #53

Draft

amcim wants to merge 23 commits into

amrml-rewritefrom

feature-rescoring

Draft

Feature rescoring module and outputting merged results and model fits#53
amcim wants to merge 23 commits into
amrml-rewritefrom
feature-rescoring

Commits on Sep 30, 2026
- profileORB and test suite for read/profile
  amcim
  committed
  b879b6f
- Adding test suite for read/profileORB
  amcim
  committed
  70cd7c2
- handling genome x drug contradictions with an error
  amcim
  committed
  36cab7a
Commits on Oct 1, 2026
Commits on Oct 5, 2026
- generating matrices plan/build
  amcim
  committed
  0c37dc0
- updated errors
  amcim
  committed
  dc4878a
- chore: .modeLines util for printing, .defaultOutDir for output
  amcim
  committed
  2214131
- chore: man pages
  amcim
  committed
  e17acf2
Commits on Oct 6, 2026
- runner for fitting models
  amcim
  committed
  dcdefcd
- adding eligbility unit tests
  amcim
  committed
  071cd02
- Merge branch 'eligible' into runner
  amcim
  committed
  dcc8f1c
- matching old metrics code
  amcim
  committed
  b8faade
- chore: documentation
  amcim
  committed
  df66e18
Commits on Oct 8, 2026
- feature rescoring module and connecting rewrite/old output
  amcim
  committed
  46d7630
- manual pages
  amcim
  committed
  51b8363
- parallelism and runner comment cleanup
  amcim
  committed
  505db16
- Adding biocparallel dependency and man pages
  amcim
  committed
  f8c34ab
Commits on Oct 20, 2026
- Merging rewrite branch changes
  epbrenner
  committed
  39c81de
Commits on Oct 21, 2026
- Imbuing MAGIC
  epbrenner
  committed
  b3cd83a
Commits on Oct 22, 2026
- Syncing with `runner`
  epbrenner
  committed
  0f479d6