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feat: MDR targets (yes/no and combination) and design spec - #54

Merged

eboyer221 merged 17 commits into

amrml-rewritefrom

mdr

Oct 27, 2026

Merged

feat: MDR targets (yes/no and combination) and design spec#54
eboyer221 merged 17 commits into
amrml-rewritefrom
mdr

Commits on Oct 16, 2026
- docs: add MDR design spec
  eboyer221
  committed
  8a00987
- feat: add MDR yes/no target and undetermined status to profileORB()
  eboyer221
  committed
  376a8b8
- feat: add MDR combination target to profile and eligibility
  eboyer221
  committed
  2b0f678
- feat: fit MDR combination target with multinomial regression
  eboyer221
  committed
  4be5691
- docs: record MDR combination results against old amRml
  eboyer221
  committed
  803ba02
Commits on Oct 19, 2026
- chore: merge runner (cross-drug fit reuse) into mdr
  eboyer221
  committed
  7d71295
- chore: exclude design/ from the package build
  eboyer221
  committed
  3dd51bb
- fix: put design/ on its own .Rbuildignore line
  eboyer221
  committed
  191cf56
- refactor: declare multi-class targets in the registry
  eboyer221
  committed
  5bed524
Commits on Oct 21, 2026
- print MDR in eligibility
  AbhirupaGhosh
  committed
  250d9c4
- Merge branch 'runner' into mdr
  AbhirupaGhosh
  authored
  d6afe4a
- print model units
  AbhirupaGhosh
  committed
  9249ebf
- add mdr parameters to workflow
  AbhirupaGhosh
  committed
  6ca9bfe
Commits on Oct 26, 2026
- chore: merge amrml-rewrite (#52) into mdr
  eboyer221
  committed
  b52df60
- refactor: rename min_label_genomes to min_mdr_label_genomes
  eboyer221
  committed
  5c0c8f0
- Update orb-read.R
  AbhirupaGhosh
  committed
  3cdb889
Commits on Oct 27, 2026
- feat: skip MDR combination scopes whose labels span fewer than two classes
  eboyer221
  committed
  85a1860

Commits

Commits on Oct 16, 2026

Commits on Oct 19, 2026

Commits on Oct 21, 2026

Commits on Oct 26, 2026

Commits on Oct 27, 2026