Repository navigation
Fix ANOVA and pairwise gene set enrichment and spatial registration plot visualization - #125
Open
manishabarse wants to merge 2 commits into
Open
manishabarse wants to merge 2 commits into
manishabarse wants to merge 2 commits into
Conversation
…ion heatmap domain colors - Preserve single-column ANOVA results with drop = FALSE - Standardize ANOVA result column names - Add code to handle colors for pairwise comparisons and ANOVA results.
This branch has not been deployed
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
I noticed some plots failed because the color mappings did not include pairwise spatial domain (SpD) comparisons (e.g., L1-L2) or the overall ANOVA result. ANOVA gene set enrichment also encountered issues with result column names and single-column data frames being simplified to vectors.
Changes
golem::to app launch function.scalesto DESCRIPTION file used for color interpolation.Implementation
Validation / Testing
run_app.Rscript.