Issues

• TMB specific instructions for AI and C++ developers

  NOAA-FIMS/FIMS#1895 · Filter by author Andrea-Havron-NOAA opened on Oct 21, 2026
  4

• The data bot adds new packaged-fit .rda files to PRs that do not change the model

  NOAA-FIMS/FIMS#1893 · Filter by author grantdadams opened on Oct 20, 2026
  1

• Parameters need to be ordered

  kind: documentationkind: vignette

  HighFilter by Priority: High

  MediumFilter by Effort: Medium
  Task

  NOAA-FIMS/FIMS#1875 · Filter by author kellijohnson-NOAA opened on Oct 15, 2026
  1

• Put update-data-r.yml in NOAA-FIMS/.github

  component: GitHub actionskind: maintenance

  LowFilter by Priority: Low

  LowFilter by Effort: Low
  Task

  NOAA-FIMS/FIMS#1870 · Filter by author Bai-Li-NOAA opened on Oct 14, 2026
  

• update the fims-input-data vignette

  NOAA-FIMS/FIMS#1846 · Filter by author Andrea-Havron-NOAA opened on Oct 8, 2026
  

• Avoid duplicate length-composition parsing in initialize_comp()

  status: triage_needed
  NOAA-FIMS/FIMS#1842 · Filter by author msupernaw opened on Oct 8, 2026

• Correct CalculateSBPR0() age transitions when natural mortality varies by age

  status: triage_needed
  NOAA-FIMS/FIMS#1836 · Filter by author JonBrodziak opened on Oct 7, 2026
  1

  

• Support observed age bins that differ from model ages for ageing error

  kind: refactor
  Feature

  NOAA-FIMS/FIMS#1831 · Filter by author awilnoaa opened on Oct 7, 2026
  4

• Update devcontainer to new R version

  dependencies

  LowFilter by Priority: Low

  LowFilter by Effort: Low
  Task

  NOAA-FIMS/FIMS#1830 · Filter by author kellijohnson-NOAA opened on Oct 7, 2026 · FY-2027_Q4
  

• Synchronize fields between R helper functions and C++ cores

  status: triage_needed
  NOAA-FIMS/FIMS#1829 · Filter by author Bai-Li-NOAA opened on Oct 7, 2026
  1

• Align default module parameter values between R helper functions and C++ constructors

  status: triage_needed
  NOAA-FIMS/FIMS#1828 · Filter by author Bai-Li-NOAA opened on Oct 7, 2026

• Diagnostics vignette needs to offset log_devs in plot for likelihood profile over R0 because the total likelihood is masking it

  kind: vignettestatus: triage_needed
  Bug

  NOAA-FIMS/FIMS#1819 · Filter by author e-perl-NOAA opened on Oct 5, 2026
  

• Helper functions for data input from scratch

  status: triage_needed

  LowFilter by Effort: Low
  Feature

  NOAA-FIMS/FIMS#1818 · Filter by author e-perl-NOAA opened on Oct 5, 2026
  6

• Implementing time-varying log_q for case study

  status: needs discussion

  MediumFilter by Priority: Medium

  LowFilter by Effort: Low
  Feature

  NOAA-FIMS/FIMS#1815 · Filter by author alexjensen-NOAA opened on Oct 5, 2026
  

• Remove log_sd column in favor of individual lines

  status: triage_needed
  Bug

  NOAA-FIMS/FIMS#1810 · Filter by author kellijohnson-NOAA opened on Oct 4, 2026
  1

• [Feature]: warn users when logit_steep puts steepness at a bound

  NOAA-FIMS/FIMS#1806 · Filter by author grantdadams opened on Oct 1, 2026

• get_estimates() returns log_sd column but parameter will not always be log_sd

  kind: refactorstatus: needs discussion
  Bug

  NOAA-FIMS/FIMS#1802 · Filter by author kellijohnson-NOAA opened on Oct 1, 2026
  4

• input versus estimated for log_sd are on different scales

  status: triage_needed

  HighFilter by Priority: High
  Bug

  NOAA-FIMS/FIMS#1801 · Filter by author kellijohnson-NOAA opened on Oct 1, 2026
  3

  

• Allow profiling over parameters that have the same label across fleets, age, or timing

  kind: diagnosticstatus: needs discussion

  MediumFilter by Priority: Medium
  Bug

  NOAA-FIMS/FIMS#1799 · Filter by author kellijohnson-NOAA opened on Oct 1, 2026

• growth-derived weight-at-age is biased when growth extends past the population size grid

  Bug

  NOAA-FIMS/FIMS#1792 · Filter by author grantdadams opened on Sep 30, 2026

• [Feature]: equilibrium-based option for initial numbers-at-age

  status: triage_needed
  NOAA-FIMS/FIMS#1784 · Filter by author grantdadams opened on Sep 30, 2026

• Expose biological size-grid configuration through R/Rcpp

  status: triage_needed
  NOAA-FIMS/FIMS#1783 · Filter by author awilnoaa opened on Sep 30, 2026

• get_report(fit)$nll_components doesn't have the name of each component

  component: c++ distributionskind: refactor

  MediumFilter by Priority: Medium

  MediumFilter by Effort: Medium
  Task

  NOAA-FIMS/FIMS#1782 · Filter by author e-perl-NOAA opened on Sep 30, 2026 · FY-2027_Q1
  10

• A fleet with coarser length bins than the age_to_length_conversion gets a subset of the conversion rows, not an aggregate

  status: triage_needed
  NOAA-FIMS/FIMS#1778 · Filter by author grantdadams opened on Sep 29, 2026
  6

• Likelihood profile "Total" is the joint NLL at the random-effect mode, not the marginal NLL that was optimized

  status: triage_needed
  NOAA-FIMS/FIMS#1777 · Filter by author grantdadams opened on Sep 29, 2026