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  1. EngreitzLab/ipsc-ec-chrombpnet EngreitzLab/ipsc-ec-chrombpnet Public

    ChromBPNet pipeline for iPSC-to-EC differentiation: bias model training, contribution scores, motif discovery, and unified hit calling across 5 timepoints

    Python

  2. DeplanckeLab/Chromatin_modules DeplanckeLab/Chromatin_modules Public

    Chromatin Modules across cell types

    Jupyter Notebook 4

  3. DeplanckeLab/ChromatinHD DeplanckeLab/ChromatinHD Public

    High-definition modeling of chromatin + transcriptomics data

    Python 26 1

  4. EngreitzLab/igvf_tf_chrombpnet EngreitzLab/igvf_tf_chrombpnet Public

    ChromBPNet pipeline for the IGVF TF collaboration (steps 00-04.0)

    Python 1

  5. pinellolab/CRISPR_Pipeline pinellolab/CRISPR_Pipeline Public

    Python 16 13

  6. EngreitzLab/broad-nnfc-cmo-multiome EngreitzLab/broad-nnfc-cmo-multiome Public

    Reproducible analysis code for endothelial differentiation 10x Multiome CMO experiments across timepoints

    Python