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1. ViralSeq-QC ViralSeq-QC Public

   ViralSeq-QC is a command-line toolkit for the pre-processing of viral consensus sequences. It automates the detection of assembly artifacts (high N-content), analyzes length distributions, and calc…

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2. Human_Gut_Microbiome_Atlas Human_Gut_Microbiome_Atlas Public

   This project presents a comprehensive, high-resolution computational analysis of the human gut microbiome in Inflammatory Bowel Disease (IBD), specifically leveraging deep metagenomic sequencing da…

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3. p.aeruginosa-panimmunophagomics p.aeruginosa-panimmunophagomics Public

   A comprehensive pan-immunophagomic analysis of Pseudomonas aeruginosa, characterizing CRISPR-Cas arrays, prophage integrations, and innate bacterial defense repertoires across diverse clinical isol…

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4. Influenza-Multi-Segment-Transcriptomics Influenza-Multi-Segment-Transcriptomics Public

   Transcriptomic profiling pipeline for quantifying multi-segment Influenza A (H1N1) viral gene expression from RNA-seq data using Bowtie2 and R.

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5. campylobacter-resistome-wgcna campylobacter-resistome-wgcna Public

   A WGCNA pipeline systematically interrogating the Campylobacter resistome through topological network scaling to uncover co-expressed stress-response loci and significant module-trait biological co…

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6. nf-core-viralrecon-influenza nf-core-viralrecon-influenza Public

   Reference-guided genomic variant mapping pipeline and intrahost variome atlas for the segmented Influenza A virus (H1N1pdm09), characterizing within-host quasispecies diversity and mutational burde…

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