Skip to content

Check that no synonym repeats its own label #17

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
hoodcm wants to merge 1 commit into
base: main
Choose a base branch
from
Open

Check that no synonym repeats its own label #17

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
32 changes: 0 additions & 32 deletions RadLex.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -17567,7 +17567,6 @@ duplicate term</RID:Comment>
<RID:ExternalRefID>FMA:51799</RID:ExternalRefID>
<RID:ExternalRefID>UMLS:C0035327</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID1104</RID:RadLexID>
<RID:Synonym xml:lang="de">Vena centralis retinae</RID:Synonym>
<RID:Synonym xml:lang="la">vena centralis retinae</RID:Synonym>
<rdfs:label xml:lang="de">Vena centralis retinae</rdfs:label>
<rdfs:label xml:lang="en">central retinal vein</rdfs:label>
Expand Down Expand Up @@ -24242,7 +24241,6 @@ AND
<owl:Class rdf:about="http://www.radlex.org/RID/RID11556">
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID11525"/>
<RID:RadLexID xml:lang="en">RID11556</RID:RadLexID>
<RID:Synonym xml:lang="en">device-related complication</RID:Synonym>
<rdfs:label xml:lang="de">Material-assoziierte Komplikation</rdfs:label>
<rdfs:label xml:lang="en">device-related complication</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -41974,7 +41972,6 @@ values of &lt;Index1&gt; and &lt;Index2&gt; can be either integer numbers or for
<owl:Class rdf:about="http://www.radlex.org/RID/RID12509">
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID7480"/>
<RID:RadLexID xml:lang="en">RID12509</RID:RadLexID>
<RID:Synonym xml:lang="en">imaging acquisition rate</RID:Synonym>
<rdfs:label xml:lang="de">Bildaufnahmerate</rdfs:label>
<rdfs:label xml:lang="en">imaging acquisition rate</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -275294,7 +275291,6 @@ the node consisting of fat, are also normal. Large rounded nodes lymph nodes, 3
<RID:ExternalRefID>UMLS:C0022646</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID205</RID:RadLexID>
<RID:Source>Playbook</RID:Source>
<RID:Synonym xml:lang="de">Niere</RID:Synonym>
<RID:Synonym xml:lang="la">nephros</RID:Synonym>
<RID:Synonym xml:lang="la">ren</RID:Synonym>
<RID:Synonym xml:lang="de">ren (Nephros)</RID:Synonym>
Expand Down Expand Up @@ -390540,7 +390536,6 @@ Duplicate term</RID:Comment>
</owl:Restriction>
</rdfs:subClassOf>
<RID:RadLexID xml:lang="en">RID2474</RID:RadLexID>
<RID:Synonym xml:lang="de">Corpus sterni</RID:Synonym>
<RID:Synonym xml:lang="la">gladiolum</RID:Synonym>
<rdfs:label xml:lang="de">Corpus sterni</rdfs:label>
<rdfs:label xml:lang="en">body of sternum</rdfs:label>
Expand Down Expand Up @@ -395174,7 +395169,6 @@ Duplicate term</RID:Comment>
</rdfs:subClassOf>
<RID:ExternalRefID>FMA:9627</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID2493</RID:RadLexID>
<RID:Synonym xml:lang="de">Musculus pectoralis major</RID:Synonym>
<RID:Synonym xml:lang="la">musculus pectoralis major</RID:Synonym>
<rdfs:label xml:lang="de">Musculus pectoralis major</rdfs:label>
<rdfs:label xml:lang="en">pectoralis major muscle</rdfs:label>
Expand Down Expand Up @@ -395938,7 +395932,6 @@ Duplicate term</RID:Comment>
</rdfs:subClassOf>
<RID:ExternalRefID>FMA:13109</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID2496</RID:RadLexID>
<RID:Synonym xml:lang="de">Musculus pectoralis minor</RID:Synonym>
<RID:Synonym xml:lang="la">musculus pectoralis minor</RID:Synonym>
<rdfs:label xml:lang="de">Musculus pectoralis minor</rdfs:label>
<rdfs:label xml:lang="en">pectoralis minor muscle</rdfs:label>
Expand Down Expand Up @@ -445237,7 +445230,6 @@ FMA has same as pelvis RID2507</RID:Comment>
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID13497"/>
<RID:ExternalRefID>FMA:272934</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID26374</RID:RadLexID>
<RID:Synonym xml:lang="de">Region des auditorischen Kortex</RID:Synonym>
<rdfs:label xml:lang="de">Region des auditorischen Kortex</rdfs:label>
<rdfs:label xml:lang="en">region of auditory cortex</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -445287,7 +445279,6 @@ FMA has same as pelvis RID2507</RID:Comment>
<RID:ExternalRefID>CMA:CO</RID:ExternalRefID>
<RID:ExternalRefID>FMA:272936</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID26375</RID:RadLexID>
<RID:Synonym xml:lang="de">Kernzone des auditorischen Kortex</RID:Synonym>
<RID:Synonym xml:lang="en">central opercular auditory area</RID:Synonym>
<RID:Synonym xml:lang="en">central opercular auditory cortex</RID:Synonym>
<RID:Synonym xml:lang="en">central opercular cortex</RID:Synonym>
Expand Down Expand Up @@ -445339,7 +445330,6 @@ FMA has same as pelvis RID2507</RID:Comment>
</rdfs:subClassOf>
<RID:ExternalRefID>FMA:272938</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID26376</RID:RadLexID>
<RID:Synonym xml:lang="de">Kernzone des rechten auditorischen Kortex</RID:Synonym>
<RID:Synonym xml:lang="en">core auditory cortex of right temporal lobe</RID:Synonym>
<rdfs:label xml:lang="de">Kernzone des rechten auditorischen Kortex</rdfs:label>
<rdfs:label xml:lang="en">right core auditory cortex</rdfs:label>
Expand Down Expand Up @@ -445389,7 +445379,6 @@ FMA has same as pelvis RID2507</RID:Comment>
</rdfs:subClassOf>
<RID:ExternalRefID>FMA:272941</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID26377</RID:RadLexID>
<RID:Synonym xml:lang="de">Kernzone des linken auditorischen Kortex</RID:Synonym>
<RID:Synonym xml:lang="en">core auditory cortex of left temporal lobe</RID:Synonym>
<rdfs:label xml:lang="de">Kernzone des linken auditorischen Kortex</rdfs:label>
<rdfs:label xml:lang="en">left core auditory cortex</rdfs:label>
Expand Down Expand Up @@ -446058,7 +446047,6 @@ FMA has same as pelvis RID2507</RID:Comment>
</rdfs:subClassOf>
<RID:ExternalRefID>FMA:272974</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID26387</RID:RadLexID>
<RID:Synonym xml:lang="de">kaudaler Teil des rechten auditorischen Kortex</RID:Synonym>
<RID:Synonym xml:lang="en">right C</RID:Synonym>
<rdfs:label xml:lang="de">kaudaler Teil des rechten auditorischen Kortex</rdfs:label>
<rdfs:label xml:lang="en">right caudal auditory cortex</rdfs:label>
Expand All @@ -446084,7 +446072,6 @@ FMA has same as pelvis RID2507</RID:Comment>
</rdfs:subClassOf>
<RID:ExternalRefID>FMA:272977</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID26388</RID:RadLexID>
<RID:Synonym xml:lang="de">kaudaler Teil des linken auditorischen Kortex</RID:Synonym>
<RID:Synonym xml:lang="en">left C</RID:Synonym>
<rdfs:label xml:lang="de">kaudaler Teil des linken auditorischen Kortex</rdfs:label>
<rdfs:label xml:lang="en">left caudal auditory cortex</rdfs:label>
Expand All @@ -446110,7 +446097,6 @@ FMA has same as pelvis RID2507</RID:Comment>
</rdfs:subClassOf>
<RID:ExternalRefID>FMA:272983</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID26389</RID:RadLexID>
<RID:Synonym xml:lang="de">kaudomedialer Teil des rechten auditorischen Kortex</RID:Synonym>
<RID:Synonym xml:lang="en">right CM</RID:Synonym>
<rdfs:label xml:lang="de">kaudomedialer Teil des rechten auditorischen Kortex</rdfs:label>
<rdfs:label xml:lang="en">right caudomedial auditory cortex</rdfs:label>
Expand Down Expand Up @@ -446199,7 +446185,6 @@ FMA has same as pelvis RID2507</RID:Comment>
</rdfs:subClassOf>
<RID:ExternalRefID>FMA:272986</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID26390</RID:RadLexID>
<RID:Synonym xml:lang="de">kaudomedialer Teil des linken auditorischen Kortex</RID:Synonym>
<RID:Synonym xml:lang="en">left CM</RID:Synonym>
<rdfs:label xml:lang="de">kaudomedialer Teil des linken auditorischen Kortex</rdfs:label>
<rdfs:label xml:lang="en">left caudomedial auditory cortex</rdfs:label>
Expand Down Expand Up @@ -590206,7 +590191,6 @@ Have &quot;almost certainly&quot; and &quot;present&quot;</RID:Comment>
<RID:RadLexID xml:lang="en">RID32018</RID:RadLexID>
<RID:Synonym xml:lang="en">external iliac lymph nodes set</RID:Synonym>
<RID:Synonym xml:lang="la">nodi iliaci externi</RID:Synonym>
<RID:Synonym xml:lang="de">nodi lymphatici iliaci externi</RID:Synonym>
<RID:Synonym xml:lang="la">nodi lymphoidei iliaci externi</RID:Synonym>
<rdfs:label xml:lang="en">external iliac lymph node group</rdfs:label>
<rdfs:label xml:lang="de">nodi lymphatici iliaci externi</rdfs:label>
Expand Down Expand Up @@ -640430,7 +640414,6 @@ CausesObstructive uropathy occurs when urine cannot drain through a ureter (a tu
<RID:RadLexID xml:lang="en">RID34583</RID:RadLexID>
<RID:Synonym xml:lang="en">azygos continuation</RID:Synonym>
<RID:Synonym xml:lang="en">azygos continuation of inferior vena cava</RID:Synonym>
<RID:Synonym xml:lang="en">azygous continuation of inferior vena cava</RID:Synonym>
<rdfs:label xml:lang="de">Fortsetzung der Vena cava inferior durch die Vena azygos</rdfs:label>
<rdfs:label xml:lang="en">azygous continuation of inferior vena cava</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -729754,7 +729737,6 @@ In the lung, a micronodule is defined as a nodule less than 3mm in size.</RID:De
</rdfs:subClassOf>
<RID:ExternalRefID>FMA:74377</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID38837</RID:RadLexID>
<RID:Synonym xml:lang="de">fibromuskulärer Teil der periurethralen Zone der Prostata</RID:Synonym>
<rdfs:label xml:lang="en">fibromuscular part of peri-urethral zone of prostate</rdfs:label>
<rdfs:label xml:lang="de">fibromuskulärer Teil der periurethralen Zone der Prostata</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -745594,7 +745576,6 @@ background prostate on DW images</RID:Definition>
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID39704"/>
<RID:ExternalRefID>FMA:37493</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID39708</RID:RadLexID>
<RID:Synonym xml:lang="de">proximale Epiphyse der distalen Phalanx des Daumens</RID:Synonym>
<rdfs:label xml:lang="en">proximal epiphysis of distal phalanx of thumb</rdfs:label>
<rdfs:label xml:lang="de">proximale Epiphyse der distalen Phalanx des Daumens</rdfs:label>
</owl:Class>
Expand All @@ -745607,7 +745588,6 @@ background prostate on DW images</RID:Definition>
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID39708"/>
<RID:ExternalRefID>FMA:37494</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID39709</RID:RadLexID>
<RID:Synonym xml:lang="de">proximale Epiphyse der distalen Phalanx des rechten Daumens</RID:Synonym>
<rdfs:label xml:lang="en">proximal epiphysis of distal phalanx of right thumb</rdfs:label>
<rdfs:label xml:lang="de">proximale Epiphyse der distalen Phalanx des rechten Daumens</rdfs:label>
</owl:Class>
Expand All @@ -745631,7 +745611,6 @@ background prostate on DW images</RID:Definition>
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID39708"/>
<RID:ExternalRefID>FMA:37495</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID39710</RID:RadLexID>
<RID:Synonym xml:lang="de">proximale Epiphyse der distalen Phalanx des linken Daumens</RID:Synonym>
<rdfs:label xml:lang="en">proximal epiphysis of distal phalanx of left thumb</rdfs:label>
<rdfs:label xml:lang="de">proximale Epiphyse der distalen Phalanx des linken Daumens</rdfs:label>
</owl:Class>
Expand All @@ -745644,7 +745623,6 @@ background prostate on DW images</RID:Definition>
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID39703"/>
<RID:ExternalRefID>FMA:37498</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID39711</RID:RadLexID>
<RID:Synonym xml:lang="de">proximale Epiphyse der Phalanx des Zeigefingers</RID:Synonym>
<rdfs:label xml:lang="en">proximal epiphysis of phalanx of index finger</rdfs:label>
<rdfs:label xml:lang="de">proximale Epiphyse der Phalanx des Zeigefingers</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -745793,7 +745771,6 @@ background prostate on DW images</RID:Definition>
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID39703"/>
<RID:ExternalRefID>FMA:37510</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID39721</RID:RadLexID>
<RID:Synonym xml:lang="de">proximale Epiphyse der Phalanx des Mittelfingers</RID:Synonym>
<rdfs:label xml:lang="en">proximal epiphysis of phalanx of middle finger</rdfs:label>
<rdfs:label xml:lang="de">proximale Epiphyse der Phalanx des Mittelfingers</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -745944,7 +745921,6 @@ background prostate on DW images</RID:Definition>
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID39703"/>
<RID:ExternalRefID>FMA:37522</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID39731</RID:RadLexID>
<RID:Synonym xml:lang="de">proximale Epiphyse der Phalanx des Ringfingers</RID:Synonym>
<rdfs:label xml:lang="en">proximal epiphysis of phalanx of ring finger</rdfs:label>
<rdfs:label xml:lang="de">proximale Epiphyse der Phalanx des Ringfingers</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -746074,7 +746050,6 @@ background prostate on DW images</RID:Definition>
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID39703"/>
<RID:ExternalRefID>FMA:37534</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID39741</RID:RadLexID>
<RID:Synonym xml:lang="de">proximale Epiphyse der Phalanx des kleinen Fingers</RID:Synonym>
<rdfs:label xml:lang="en">proximal epiphysis of phalanx of little finger</rdfs:label>
<rdfs:label xml:lang="de">proximale Epiphyse der Phalanx des kleinen Fingers</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -747273,7 +747248,6 @@ background prostate on DW images</RID:Definition>
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID39805"/>
<RID:ExternalRefID>FMA:37614</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID39813</RID:RadLexID>
<RID:Synonym xml:lang="de">distale Epiphyse der Phalanx des Zeigefingers</RID:Synonym>
<rdfs:label xml:lang="en">distal epiphysis of phalanx of index finger</rdfs:label>
<rdfs:label xml:lang="de">distale Epiphyse der Phalanx des Zeigefingers</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -747414,7 +747388,6 @@ background prostate on DW images</RID:Definition>
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID39805"/>
<RID:ExternalRefID>FMA:37626</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID39823</RID:RadLexID>
<RID:Synonym xml:lang="de">distale Epiphyse der Phalanx des Mittelfingers</RID:Synonym>
<rdfs:label xml:lang="en">distal epiphysis of phalanx of middle finger</rdfs:label>
<rdfs:label xml:lang="de">distale Epiphyse der Phalanx des Mittelfingers</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -747555,7 +747528,6 @@ background prostate on DW images</RID:Definition>
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID39805"/>
<RID:ExternalRefID>FMA:37638</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID39833</RID:RadLexID>
<RID:Synonym xml:lang="de">distale Epiphyse der Phalanx des Ringfingers</RID:Synonym>
<rdfs:label xml:lang="en">distal epiphysis of phalanx of ring finger</rdfs:label>
<rdfs:label xml:lang="de">distale Epiphyse der Phalanx des Ringfingers</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -747705,7 +747677,6 @@ background prostate on DW images</RID:Definition>
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID39805"/>
<RID:ExternalRefID>FMA:37650</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID39843</RID:RadLexID>
<RID:Synonym xml:lang="de">distale Epiphyse der Phalanx des kleinen Fingers</RID:Synonym>
<rdfs:label xml:lang="en">distal epiphysis of phalanx of little finger</rdfs:label>
<rdfs:label xml:lang="de">distale Epiphyse der Phalanx des kleinen Fingers</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -824103,7 +824074,6 @@ Enhancement from hypo on precontrast to iso on arterial phase does not qualify a
<owl:Class rdf:about="http://www.radlex.org/RID/RID43628">
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID43598"/>
<RID:RadLexID xml:lang="en">RID43628</RID:RadLexID>
<RID:Synonym xml:lang="en">Hickey view</RID:Synonym>
<rdfs:label xml:lang="de">Aufnahme nach Hickey</rdfs:label>
<rdfs:label xml:lang="en">Hickey view</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -842266,7 +842236,6 @@ Enhancement from hypo on precontrast to iso on arterial phase does not qualify a
</rdfs:subClassOf>
<RID:ExternalRefID>FMA:23242</RID:ExternalRefID>
<RID:RadLexID xml:lang="en">RID44489</RID:RadLexID>
<RID:Synonym xml:lang="de">margo medialis scapulae</RID:Synonym>
<RID:Synonym xml:lang="la">margo medialis scapulae</RID:Synonym>
<RID:Synonym xml:lang="en">medial border of scapula</RID:Synonym>
<RID:Synonym xml:lang="en">medial part of scapula</RID:Synonym>
Expand Down Expand Up @@ -919194,7 +919163,6 @@ of the nodule.</RID:Definition>
<owl:Class rdf:about="http://www.radlex.org/RID/RID474">
<rdfs:subClassOf rdf:resource="http://www.radlex.org/RID/RID39520"/>
<RID:RadLexID xml:lang="en">RID474</RID:RadLexID>
<RID:Synonym xml:lang="en">buttock</RID:Synonym>
<RID:Synonym xml:lang="en">gluteal region</RID:Synonym>
<rdfs:label xml:lang="de">Glutealregion</rdfs:label>
<rdfs:label xml:lang="en">buttock</rdfs:label>
Expand Down
3 changes: 2 additions & 1 deletion tests/robot-report-profile.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1 +1,2 @@
ERROR file:./tests/sparql/robot/leading_trailing_multi_whitespace.rq
ERROR file:./tests/sparql/robot/leading_trailing_multi_whitespace.rq
ERROR file:./tests/sparql/robot/synonym_equal_to_label.rq
22 changes: 22 additions & 0 deletions tests/sparql/robot/synonym_equal_to_label.rq
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,22 @@
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rid: <http://www.radlex.org/RID/>

#
# Part of the RadLex ontology SPARQL test suite. Bindings to this query represent violations of the test.
#
# Test that no synonym repeats its own class's label exactly, in the same language. Such a synonym adds
# nothing. The match is exact: a synonym that differs from the label only in capitalization is not
# reported, because it often carries the correct form of a proper name.
#
# VIOLATIONS will be bindings that have, on ?entity, ?property, and ?value respectively:
# - The class.
# - The synonym property (rid:Synonym or a sub-property).
# - The synonym that repeats the label.
#
SELECT ?entity ?property ?value
WHERE {
?property rdfs:subPropertyOf* rid:Synonym .
?entity ?property ?value .
?entity rdfs:label ?label .
FILTER(STR(?value) = STR(?label) && LANG(?value) = LANG(?label))
}
Loading