Issues

• GECKO 4 is developed in CompMetEng/GECKO

  SysBioChalmers/GECKO#489 · Filter by author edkerk opened on Oct 16, 2026

• Testing version of bayesianSensitivityTuning

  enhancement
  SysBioChalmers/GECKO#409 · Filter by author edkerk opened on Nov 19, 2025
  7

• DLKcat on Mac with Apple Silicon (arm64 architecture)

  enhancement
  SysBioChalmers/GECKO#393 · Filter by author Mengzhensw opened on Oct 9, 2024
  15

  

• Bug detected: model.summary does not match expected phenotype for ecYeastGEM.xml for different carbon sources

  bug
  SysBioChalmers/GECKO#368 · Filter by author Caseses100 opened on Mar 18, 2024
  2

• convert the manual tests to run with GH actions

  SysBioChalmers/GECKO#269 · Filter by author mihai-sysbio opened on Mar 6, 2023
  

• feat: universal DLKcat.tsv for both light and full ecModels

  enhancement
  SysBioChalmers/GECKO#248 · Filter by author Yu-sysbio opened on Feb 28, 2023
  8

• chore: consistent names and terminology

  enhancement
  SysBioChalmers/GECKO#229 · Filter by author edkerk opened on Feb 22, 2023
  1

• refactor: update general kcat database

  SysBioChalmers/GECKO#157 · Filter by author edkerk opened on May 25, 2022
  6

• Check predicted growth rate by ecYeastGEM

  buggecko1-2
  SysBioChalmers/GECKO#131 · Filter by author IVANDOMENZAIN opened on Feb 1, 2021
  

• gecko.py: constrain_pool() not working with cobra 0.17.1 version

  buggecko1-2geckopy
  SysBioChalmers/GECKO#94 · Filter by author sousamd opened on Feb 3, 2020

• feat: new EC main class 7 introduced in BRENDA

  enhancementquestion
  SysBioChalmers/GECKO#79 · Filter by author BenjaSanchez opened on Sep 2, 2019

• problems in manualModifications.m

  buggecko1-2
  SysBioChalmers/GECKO#72 · Filter by author IVANDOMENZAIN opened on Jun 11, 2019

• fix: adjust_pool_bounds fails for more than 1 protein

  buggecko1-2geckopy
  SysBioChalmers/GECKO#36 · Filter by author BenjaSanchez opened on Jul 18, 2018