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1. nature-compute-lab nature-compute-lab Public

   Small, reproducible experiments on development, catalysis, symbiosis, repair, immune memory, stable regimes and clocks.

   Python 1

2. perturbation-composition-lab perturbation-composition-lab Public

   Two independent perturbation experiments: 289 combinations, matched neural/ridge/additive models, 20 dependent holdouts and released inference.

   Python 1

3. evidence-retrieval-bench evidence-retrieval-bench Public

   Scientific retrieval and citation auditing: disjoint supervised groups, 300 verdicts, 1128 paired stress cases and a blinded unreviewed packet.

   Python 1

4. bio-evidence bio-evidence Public

   Biological data and model-evaluation checks, with nine public-data applications and reproducible model failure cases.

   Python 1

5. extrusion-net extrusion-net Public

   Chromatin loop extrusion as a sequence model's routing operator: 36 runs vs attention, BiLSTM and a one-arm ablation, 8x length and 300-sequence tests, learned CTCF orientation.

   Python 1

6. next-token-bio next-token-bio Public

   How much of next-residue / next-nucleotide prediction is homology memorisation? n-grams vs parameter-matched LSTM/GPT on held-out protein families and E. coli codon positions.

   Python 1