SSA

Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

Requirements

• python >=3.7
• numpy
• pandas
• matplotlib
• pyyaml

Command line usage

The main program kinetics.py can be used as below

python kinetics.py -f <input yaml file>

For more help

python kinetics.py --h

Input File

A sample input file can be found inside /src directory.

License

GNU GPL V3