Issues

• Add centroid parameter functionality for remove, replace classes to match insert

  bagherilab/ARCADE#238 · Filter by author allison-li-1016 opened on Sep 23, 2026
  

• Create iCAR-specific parameter names even if they reference the same variable

  bagherilab/ARCADE#235 · Filter by author allison-li-1016 opened on Aug 20, 2026
  

• Make CheckLocationSpace() a static method/put in Utils

  bagherilab/ARCADE#215 · Filter by author allison-li-1016 opened on Mar 30, 2026
  

• Adding event logger for patch simulations

  category: simpackage: patchpriority: mediumsize: mediumtype: feature
  bagherilab/ARCADE#191 · Filter by author allison-li-1016 opened on Jun 17, 2025
  1

• Add command flags for suppressing outputs. e.g. CELLS or LOCATIONS, for larger file sizes when they are not necessary.

  package: core
  Enhancement

  bagherilab/ARCADE#186 · Filter by author cainja opened on May 29, 2025

• Improve input handling for out of bounds or invalid parameters

  bagherilab/ARCADE#185 · Filter by author cainja opened on May 28, 2025

• Add initial condition tag for parameter

  package: core
  Task

  bagherilab/ARCADE#177 · Filter by author pohaoc2 opened on Apr 28, 2025
  

• Parallelize the CPM algorithm

  package: pottspriority: low
  bagherilab/ARCADE#170 · Filter by author cainja opened on Apr 3, 2025

• Overhead for CARCADE Merge into V3

  bagherilab/ARCADE#169 · Filter by author allison-li-1016 opened on Mar 31, 2025

• Make class-specific Parameters XML files

  priority: mediumsize: mediumtype: feature
  Enhancement

  bagherilab/ARCADE#156 · Filter by author Jannetty opened on Feb 20, 2025
  

• Reorganize the util package

  category: util
  bagherilab/ARCADE#149 · Filter by author jessicasyu opened on Feb 4, 2025

• Make division offset along plane's normal vector instead of offestfrom edge of cell

  category: envpackage: pottspriority: mediumsize: mediumtype: feature
  Enhancement

  bagherilab/ARCADE#137 · Filter by author Jannetty opened on Jan 7, 2025
  

• Refactor Graph class in core-utils subpackage

  category: utilpackage: core
  Task

  bagherilab/ARCADE#133 · Filter by author cainja opened on Dec 17, 2024
  

• Add documentation for installation and usage

  type: docs
  bagherilab/ARCADE#130 · Filter by author jessicasyu opened on Dec 13, 2024
  

• Update Docker image to support patch simulations

  priority: mediumsize: mediumtype: feature
  bagherilab/ARCADE#128 · Filter by author jessicasyu opened on Dec 12, 2024

• Improve documentation website

  type: docs
  bagherilab/ARCADE#125 · Filter by author jessicasyu opened on Dec 9, 2024
  

• Make default cell class behavior consistent between implementations

  category: simpackage: patchpackage: pottssize: smalltype: feature
  bagherilab/ARCADE#123 · Filter by author jessicasyu opened on Nov 27, 2024
  1

• Update MiniBox to support Bernoulli distribution

  category: utilpackage: coresize: xsmalltype: bug
  bagherilab/ARCADE#120 · Filter by author jessicasyu opened on Nov 27, 2024

• Make parameter that specifies relative critical volume of GMCs to stem cells

  category: agentpackage: pottspriority: hightype: feature
  Task

  bagherilab/ARCADE#109 · Filter by author Jannetty opened on Nov 19, 2024
  1

  

• Make PatchActionConvert reuse old cell processes

  category: agentpackage: patchsize: mediumtype: feature
  bagherilab/ARCADE#94 · Filter by author allison-li-1016 opened on Nov 13, 2024
  2

• Race condition on updateExternal() method call in PatchProcessMetabolism

  category: agentmigration: v2 to v3package: patchpriority: hightype: bug
  bagherilab/ARCADE#92 · Filter by author allison-li-1016 opened on Nov 13, 2024
  3

  

• Test fly cell classes

  package: pottspriority: mediumtype: test
  Task

  bagherilab/ARCADE#91 · Filter by author Jannetty opened on Nov 12, 2024
  

• Implement radiation therapy in v3

  bagherilab/ARCADE#88 · Filter by author jacob-evarts opened on Nov 12, 2024
  

• Implement chemotherapy treatment in v3

  bagherilab/ARCADE#87 · Filter by author jacob-evarts opened on Nov 12, 2024
  

• Add GraphSites serializer and deserializer

  category: envmigration: v2 to v3package: patch
  bagherilab/ARCADE#84 · Filter by author cainja opened on Oct 28, 2024
  1