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@bartongroup

Geoff Barton's Computational Biology Group

Codes from Geoff Barton's group and the Data Analysis Group (DAG) headed by Dr James Abbott.

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  1. Proteus Proteus Public

    R package for analysing proteomics data

    R 49 3

  2. RATS RATS Public

    Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.

    R 33 1

  3. 2passtools 2passtools Public

    Two pass alignment for long reads

    Python 22 1

  4. LBS-comparison LBS-comparison Public

    This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools

    Jupyter Notebook 18 3

  5. AlmostSignificant AlmostSignificant Public

    A server for maintaining high-throughput sequencing QC data

    Python 13

  6. yanocomp yanocomp Public

    Yet another nanopore modification comparison tool

    Python 12 1

Repositories

Showing 10 of 97 repositories
  • MG_BetaReg_ST Public

    Single-cell spatial transcriptomics of the embryonic pancreas (Cantley)

    bartongroup/MG_BetaReg_ST's past year of commit activity
    R 0 0 0 0 Updated Oct 14, 2026
  • MG_H3meATAC Public

    H3K9me3 ATAC-seq analysis

    bartongroup/MG_H3meATAC's past year of commit activity
    R 0 MIT 0 0 0 Updated Oct 12, 2026
  • MG_H3meCut Public

    H3K9me3 CUT&Tag analysis

    bartongroup/MG_H3meCut's past year of commit activity
    R 0 MIT 0 0 0 Updated Oct 12, 2026
  • fenr Public

    Fast functional enrichment.

    bartongroup/fenr's past year of commit activity
    R 0 0 0 0 Updated Sep 23, 2026
  • slivka Public
    bartongroup/slivka's past year of commit activity
    Python 10 Apache-2.0 4 34 (1 issue needs help) 1 Updated Sep 10, 2026
  • MG_ChromCom2 Public

    Chromatin compaction 2 (Tanaka)

    bartongroup/MG_ChromCom2's past year of commit activity
    R 0 0 0 0 Updated Sep 10, 2026
  • dexdash Public

    Interactive explorer for differential expression analysis centred on the volcano plot. Features fast functional enrichment.

    bartongroup/dexdash's past year of commit activity
    R 2 0 0 0 Updated Aug 12, 2026
  • LIGYSIS-web Public
    bartongroup/LIGYSIS-web's past year of commit activity
    Roff 9 MIT 1 0 1 Updated Jun 22, 2026
  • slivka-bio-docker Public

    Docker Compose configuration for slivka-bio

    bartongroup/slivka-bio-docker's past year of commit activity
    Shell 3 Apache-2.0 1 0 0 Updated Jun 2, 2026
  • slivka-bio-installer Public Forked from proteinverse/slivka-bio-installer
    bartongroup/slivka-bio-installer's past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated May 25, 2026
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