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Merge BLAST chunking, fix temp-file leak and summary-CSV bug, and improved rule resources - #12

Merged

SchistoDan merged 12 commits into

mainfrom

claude/beegees-blast-chunking-3x246z

Aug 21, 2026

Merged

Merge BLAST chunking, fix temp-file leak and summary-CSV bug, and improved rule resources#12
SchistoDan merged 12 commits into
mainfrom
claude/beegees-blast-chunking-3x246z

Commits on Aug 19, 2026
- perf(taxonomic_validation): chunk local BLAST queries 50 per invocation
  claude
  committed
  0b4e2f5
- fix(structural_validation): stop leaking temp files; add --threads; right-size resources
  claude
  committed
  1cd69c7
- Update config.yaml
  SchistoDan
  authored
  5aca736
- Update multiqc_config.yaml
  SchistoDan
  authored
  6fbb24e
- docs(config): right-size rule resources and document what drives each one
  claude
  committed
  a250e34
Commits on Aug 20, 2026
- Update config.yaml
  SchistoDan
  authored
  7eaaaeb
- Update beegees_env.yaml
  SchistoDan
  authored
  8c2f0c8
- Update Snakefile
  SchistoDan
  authored
  6a6a8fd
- Update config.yaml
  SchistoDan
  authored
  8bcc897
- Update Snakefile
  SchistoDan
  authored
  8514a46
- test(config): make threads optional and catch unresolved resource reads
  claude
  committed
  fc4b929
- Merge branch 'main' into claude/beegees-blast-chunking-3x246z
  SchistoDan
  authored
  ca65258