Issues

• [bug] layout.get_collections('run', merge=True) extra subject 0; missing others

  bids-standard/pybids#1275 · Filter by author WillForan opened on Aug 26, 2026
  1

• Establish RRID for citations etc

  bids-standard/pybids#1266 · Filter by author yarikoptic opened on Jul 21, 2026

• Feature Request: Add BIDSReport parsing support for ASL, PET, and MRS modalities

  bids-standard/pybids#1256 · Filter by author anushkagupta200615-jpg opened on Jul 7, 2026

• BIDSLayout crashes with BIDSConflictingValuesError when zero-padded entities in filenames match integer entities in JSON sidecars

  bids-standard/pybids#1255 · Filter by author anushkagupta200615-jpg opened on Jul 7, 2026

• [bug] BIDSFile.get_associations() returns wrong files for some entities

  bids-standard/pybids#1253 · Filter by author MaximeBICMTL opened on Jul 5, 2026
  3

• [ENH] Expose valid entity names for typing

  bids-standard/pybids#1241 · Filter by author mcsitter opened on Apr 15, 2026

• [ENH] Allow Users to Point to a Specific Version of the Schema

  Enhancement

  bids-standard/pybids#1227 · Filter by author bendhouseart opened on Mar 11, 2026
  

• Support latest eyetracking updates from the BIDS specification

  bids-standard/pybids#1219 · Filter by author sinaklg opened on Feb 24, 2026

• [BUG] Group Transformation Class uses "name" as input

  bids-standard/pybids#1180 · Filter by author jmumford opened on Oct 7, 2025

• Default path_pattern for build_path?

  bids-standard/pybids#1178 · Filter by author kinleyid opened on Sep 30, 2025
  1

• Allow dictionary input to BIDSLayout(derivatives=<>)

  enhancement
  bids-standard/pybids#1155 · Filter by author tsalo opened on Aug 21, 2025

• Behaviour in presence of Inheritance Principle

  bids-standard/pybids#1148 · Filter by author Lestropie opened on Jul 10, 2025

• Adding provenance features to pybids

  bids-standard/pybids#1142 · Filter by author bclenet opened on Jun 12, 2025
  1

• Add type hints to PyBIDS

  bids-standard/pybids#1130 · Filter by author maximemulder opened on Apr 26, 2025
  1

• scope not assigned when loading a derivative directory directly

  bids-standard/pybids#1129 · Filter by author eric-d-knowles opened on Apr 20, 2025

• Is it possible to group Subjects (Patients) to reduce number of folders in the root of dataset for very large databases?

  bids-standard/pybids#1126 · Filter by author eulerleibniz opened on Mar 21, 2025

• sourcedata indexed on Windows

  bugwindows
  bids-standard/pybids#1111 · Filter by author kaare-mikkelsen opened on Dec 9, 2024
  1

• UPath kwargs are not persisted from layout root to BIDSFiles

  bug
  bids-standard/pybids#1098 · Filter by author effigies opened on Nov 11, 2024

• sqlite3.OperationalError: table associations already exists

  bids-standard/pybids#1079 · Filter by author MRIDude opened on Aug 11, 2024
  4

• "fmap" pseudo-entity complicates logic for reconstructing fieldmap filenames

  bids-standard/pybids#1072 · Filter by author psadil opened on Jul 19, 2024
  1

• BIDSLayoutIndexer's **filters argument not working as expected

  bids-standard/pybids#1062 · Filter by author alperkent opened on May 10, 2024
  6

• Inherited metadata overrides immediate metadata for multi-echo data with same-named single-echo

  bug
  bids-standard/pybids#1044 · Filter by author tsalo opened on Feb 19, 2024
  1

• Collect entity-linked files in get_associations

  enhancement
  bids-standard/pybids#1043 · Filter by author tsalo opened on Feb 14, 2024

• Custom configurations are not passed to derivatives indexer

  bug
  bids-standard/pybids#1020 · Filter by author pierre-nedelec opened on Aug 28, 2023
  9

• RFC: PyBIDS 1.0 layout API

  discussion
  bids-standard/pybids#989 · Filter by author effigies opened on Apr 25, 2023
  8