Issues

• Which version of spyder, python, keras and tensorflow is used for the code #228, #229 video

  bnsreenu/python_for_microscopists#94 · Filter by author kyawtkyawthtay opened on Feb 9, 2025

• Fine tuning SAM, 'The input_points must be a 3D tensor. Of shape batch_size, nb_boxes, 4.', ' got torch.Size([2, 4]).'

  bnsreenu/python_for_microscopists#93 · Filter by author leemorton opened on Nov 21, 2024

• Output masks are dotted/checkered

  bnsreenu/python_for_microscopists#91 · Filter by author ttssibley opened on Sep 11, 2024

• Request for Guidance on Complex Immunofluorescence Image Analysis

  bnsreenu/python_for_microscopists#90 · Filter by author linhduongtuan opened on Jul 29, 2024

• NOW WHAT? - 331_fine_tune_SAM_mito.ipynb

  bnsreenu/python_for_microscopists#87 · Filter by author Barryjuait opened on Apr 26, 2024

• utf-8 error

  bnsreenu/python_for_microscopists#84 · Filter by author bhandaripratibha06 opened on Apr 16, 2024

• Noise2Void shape broadcast error during prediction

  bnsreenu/python_for_microscopists#83 · Filter by author astronerdF opened on Mar 20, 2024

• Overlapping instances in fine-tuning SAM

  bnsreenu/python_for_microscopists#82 · Filter by author Ashutosh1995 opened on Mar 14, 2024
  2

• In 331_fine_tune_SAM_mito.ipynb, the class SAMDataset(Dataset) needs to be adjusted to have 3 bands to go into the processor

  bnsreenu/python_for_microscopists#81 · Filter by author throughthetrees opened on Mar 5, 2024
  5

• label transferring error

  bnsreenu/python_for_microscopists#79 · Filter by author apal6 opened on Jan 26, 2024

• usually the segmentation map is 2D but got 3D

  bnsreenu/python_for_microscopists#77 · Filter by author jhaggle opened on Jan 8, 2024

• AttributeError: module 'keras.backend' has no attribute 'sum'

  bnsreenu/python_for_microscopists#76 · Filter by author aggarwalstuti opened on Dec 29, 2023
  1

• Error: AssertionError: ground truth has different shape (torch.Size([2, 1, 512, 512])) from input (torch.Size([2, 1, 256, 256]))

  bnsreenu/python_for_microscopists#73 · Filter by author jhaggle opened on Nov 1, 2023
  2

• 331_fine_tune_SAM_mito.ipynb - why bounding boxes?

  bnsreenu/python_for_microscopists#72 · Filter by author jhaggle opened on Oct 30, 2023

• alternative implementation of a VAE

  bnsreenu/python_for_microscopists#71 · Filter by author joepareti54 opened on Jul 31, 2023

• OSError: No file or directory found at models/satellite_standard_unet_100epochs.hdf5

  bnsreenu/python_for_microscopists#70 · Filter by author nagamani-g opened on Jul 26, 2023
  2

• Challenges in Displaying Prediction Results for Full Images (Unpatchify Issue)

  bnsreenu/python_for_microscopists#68 · Filter by author SouCh305 opened on Jul 8, 2023

• WARNING:tensorflow:Compiled the loaded model, but the compiled metrics have yet to be built. model.compile_metrics will be empty until you train or evaluate the model.

  bnsreenu/python_for_microscopists#66 · Filter by author me-sathish opened on Jun 2, 2023

• datagenerator for validation part

  bnsreenu/python_for_microscopists#63 · Filter by author najmehn00 opened on Apr 14, 2023

• Some questions about u-net ： image and mask dataset

  bnsreenu/python_for_microscopists#62 · Filter by author Blissful-Jasper opened on Apr 4, 2023

• Error in Unet code for segmentation

  bnsreenu/python_for_microscopists#61 · Filter by author 052001Anu opened on Apr 3, 2023

• Need help to get out of the below error.

  bnsreenu/python_for_microscopists#59 · Filter by author nagamani86 opened on Feb 16, 2023
  1

• i need help i need to integrate u-net with the federated learning

  bnsreenu/python_for_microscopists#58 · Filter by author pavan1225 opened on Feb 8, 2023

• 260_image_anomaly_detection_using_autoencoders

  bnsreenu/python_for_microscopists#56 · Filter by author honeysleep opened on Dec 21, 2022

• validation loss looks like overfitting

  bnsreenu/python_for_microscopists#55 · Filter by author Maryamzk opened on Dec 16, 2022