California Academy of Sciences, Institute for Biodiversity Science & Sustainability
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RAxML_Astral_trees
RAxML_Astral_trees PublicThis project generates Astral-III species trees from gene trees generated from RAxML using UCE data generated by the Phyluce pipeline. Then runs an Astral III analysis.
Repositories
- expedition-clustering Public
Expedition Clustering groups California Academy of Sciences botany specimens into inferred expeditions using a reproducible spatiotemporal DBSCAN pipeline.
- cas-web-asset-server Public Forked from specify/web-asset-server
Sample attachment server implementation for Specify.
- web-asset-importer Public
Image client used in conjunction with web-asset-server to process images/data into image server, and specify databases.
- picturae_csv_parser Public
stand alone program , used to QC csvs ready for specify import from picturae, nfn and digileap supplied data
- cas_bot_georeference Public
The python GeoReferencer which defines a BELS --> Geolocate --> GVS pipeline to assign lat/long coordinates + error radii.
- specify7 Public Forked from specify/specify7
An open-source platform for managing biological and geological collections.
- awesome-specify Public Forked from specify/awesome-specify
A list of awesome Specify integrations, software, and resources developed by the community.
- load_analyzer Public
- LabelLlama_CAS Public Forked from rafelafrance/LabelLlama
Extract information from labels on images of museum specimens. Custom modifications for the California Academy of Sciences..
- galapagos_island_mapper Public
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