Issues

• Custom Software Development Services for Scalable Business Growth

  choderalab/software-development#107 · Filter by author nucitrusms-rgb opened on May 18, 2026

• Recommend using 'duecredit' to ensure downstream tools can properly cite all modules?

  question
  choderalab/software-development#105 · Filter by author jchodera opened on May 7, 2022
  1

• Add "care and feeding of a changelog and release notes"

  choderalab/software-development#104 · Filter by author jchodera opened on Apr 18, 2022

• Add CI to automate testing for broken links

  choderalab/software-development#102 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Continuous Integration: Recommend GitHub Actions

  choderalab/software-development#101 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Unit Tests: Recommend pytest and explain rationale

  choderalab/software-development#100 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Unit Tests: Replace pymbar example with better examples

  choderalab/software-development#99 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Unit Tests: Add sections on how to parameterize tests and build test fixtures

  choderalab/software-development#98 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Python Coding Conventions: Clarify docstring conventions, especially for array shapes

  choderalab/software-development#97 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04
  1

• Add section on installing Python and configuring your development environment

  choderalab/software-development#96 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Add section on writing command-line arguments (CLI)

  choderalab/software-development#95 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Add section on serializing objects and reading/writing data

  choderalab/software-development#94 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Add section on recommended libraries

  choderalab/software-development#93 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Python Coding Convention: Add discussion of type annotations

  choderalab/software-development#92 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Add information about setting up pre-commit CI

  choderalab/software-development#91 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Be explicit about why we work with branches instead of forks on lab repo

  choderalab/software-development#90 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Be more explicit about our current git workflow

  choderalab/software-development#89 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Move recommendations to top for all sections

  choderalab/software-development#88 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• In VERSION_CONTROL.md change master to main

  choderalab/software-development#87 · Filter by author mikemhenry opened on Apr 12, 2022 · Revision 2022.04

• Mention GitLab in Version Control section

  choderalab/software-development#86 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Update cookiecutter (and fork to lab version) to be more up to date with current practices

  choderalab/software-development#85 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Update Structuring your Project with current cookiecutter structure

  choderalab/software-development#84 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Add licensing discussion about data (CC0) and documentation (CC-BY) licenses

  choderalab/software-development#83 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Create a single-page quickstart with pointers to more detail in other sections

  choderalab/software-development#82 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04

• Excise cookiecutter from PHILOSOPHY AND SCOPE

  choderalab/software-development#81 · Filter by author jchodera opened on Apr 12, 2022 · Revision 2022.04