Issues

• Celda tab runs Seurat vst HVG selection on normalized data instead of raw counts

  compbiomed/singleCellTK#805 · Filter by author joshua-d-campbell opened on Oct 7, 2026

• runSeuratFindHVG fails for dispersion and mean.var.plot with Seurat 5

  compbiomed/singleCellTK#804 · Filter by author joshua-d-campbell opened on Oct 7, 2026

• Shiny app never becomes idle under shinytest2, blocking automated tests

  compbiomed/singleCellTK#803 · Filter by author joshua-d-campbell opened on Oct 7, 2026

• Shiny app: console auto-scroll script error and duplicate HTML ids

  compbiomed/singleCellTK#802 · Filter by author joshua-d-campbell opened on Oct 7, 2026

• Shiny app logs errors from unopened tabs when started with preloaded data

  compbiomed/singleCellTK#801 · Filter by author joshua-d-campbell opened on Oct 7, 2026

• runSoupX error handler re-signals errors or silently returns without results

  compbiomed/singleCellTK#798 · Filter by author joshua-d-campbell opened on Oct 7, 2026

• runSoupX fails with an unclear error when automatic clustering gives one cluster

  compbiomed/singleCellTK#797 · Filter by author joshua-d-campbell opened on Oct 7, 2026

• convertSeuratToSCE has no option to select the proper assay to store in the assay slot

  compbiomed/singleCellTK#785 · Filter by author Ashastry2 opened on Apr 7, 2025

• parameter "sample" hard coded in QC report

  compbiomed/singleCellTK#778 · Filter by author joshua-d-campbell opened on Feb 18, 2025

• 'meta.data' is not a slot in class "Assay"

  compbiomed/singleCellTK#775 · Filter by author bcamor opened on Nov 18, 2024

• seuratUMAP fails, can't find reductions

  compbiomed/singleCellTK#774 · Filter by author mcsimenc opened on Nov 4, 2024
  1

• Can't find metrics_summary.csv - hardcoded search dir

  compbiomed/singleCellTK#773 · Filter by author mcsimenc opened on Oct 30, 2024
  1

• Weird error with reportCellQC function

  compbiomed/singleCellTK#751 · Filter by author yingzhang121 opened on Apr 5, 2024
  1

• Error runing runBBKNN function & Shiny app not working

  compbiomed/singleCellTK#702 · Filter by author siwending opened on Jun 29, 2023
  2

• In SCTK shiny app, inability to "reset" when an error occurs

  compbiomed/singleCellTK#617 · Filter by author apeleraux opened on Sep 9, 2022
  

• In SCTK shiny app, issue with refreshing parameters entered by the user

  compbiomed/singleCellTK#615 · Filter by author apeleraux opened on Sep 8, 2022
  1

• Add support for alevin-fry

  compbiomed/singleCellTK#579 · Filter by author rob-p opened on Apr 2, 2022
  5