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chore(main): release copick-shared-ui 0.8.0 - #69
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#49) ## Summary napari support for copick's filaments and instance / panoptic segmentations, with annotation tools. - **Tree**: - a Filaments node, and separate Segmentations / Instance / Panoptic nodes; - one item per segmentation, so same-key segmentations of different types no longer collide; - delete and edit actions. - **Display**: - filaments as centreline samples with direction arrows; - picks of filament objects coloured by instance; - instance segmentations in the shared instance colours; - panoptic segmentations as label and segment layers (read-only). - **Saving**: - a segmentation type selector (binary / multilabel / instance); - labels are no longer narrowed to uint8; - values are validated per type; - filament sets can be saved, optionally with sampled picks, which replace that picks set after a confirmation. - **Annotate tab**: - the shared instance browser (step, focus, show / hide, sort, filter, compact rows) for picks, filaments and instance segmentations; - filament tracing: control points, insert position, reverse, delete, **join**, convert; - instance editing: paint / erase / fill / pick, merge, delete, recount. ## Depends on - **Stacked on #47** (keep pick ids, scores and orientations); this PR's diff is only the new work. - copick-shared-ui >= 0.8.0: copick/copick-shared-ui#73 (merged; release PR copick/copick-shared-ui#69). CI installs it from PyPI, so it passes once 0.8.0 is published. - copick >= 1.28.0 (released; copick/copick#479, #480, #492, #494). ## Testing - `pytest src/napari_copick/_tests`: 14 passed. - Scripted end-to-end self-test in napari (26 checks) on a CryoET Data Portal test project with filaments, picks, instance and panoptic segmentations. 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
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…lbar and Annotate window (#111) ## Summary ChimeraX support for copick's filaments and instance / panoptic segmentations, with editing tools, a Copick Annotate window and a Copick Edit toolbar tab. **Display and data** - **Filaments**: - a Filaments tab with a stepper (`<< k of N >>`, `fp` / `fn`); - filament sets drawn as tubes in instance colours, with direction arrowheads; - control-point handles while editing. - **Segmentations**: - the Segmentations tab shows types (binary, multilabel, instance, panoptic); - instance and panoptic segmentations are drawn as per-instance surfaces; - deleting a segmentation now passes its type, so a same-key segmentation of another type is kept (data-loss fix). - **Tables**: compact two-line object tables (swatch, name, type chip / "user · session"), a header sort menu, outline selection, search across user / session / type, and wrap-around arrow keys. **Editing** - **Filaments**: - trace mouse mode (add / drag / remove control points) and cut mode; - join (also on tubes selected in the 3D view; the 3D selection and the filament list share one selection), reverse, delete, convert; - save, optionally with sampled picks. - Every filament edit is a step on ChimeraX's undo stack: Cmd/Ctrl+Z, including in copick's keyboard-shortcut mode. - **Instances**: paint / erase / pick-ID mouse modes, brush sizes, new ID, merge, delete, undo, save. - **Copick Annotate window**: - Filaments, Instances and Pick instances pages, using the shared instance browser; - tabbed with the right-hand panel group and kept in front when ArtiaX raises its options panel. - **Copick Edit toolbar tab** (31 buttons, at most as many as the Copick tab): - annotate, new picks / filaments / instances, save all; - common particle tools; - filaments, instances, brush sizes and pick colours. - Particle tools stay in the Copick tab as before. - **Commands, shortcuts, docs**: `copick filament …`, `copick instance …`, `copick annotate`, `copick save`, `copick colorpicks`; filament / instance shortcuts; documentation pages. ## Depends on - **Stacked on #108** (keep pick shifts, default score and ID); this PR's diff is only the new work. - copick-shared-ui >= 0.8.0: copick/copick-shared-ui#73 (merged; release PR copick/copick-shared-ui#69). CI installs it from PyPI, so it passes once 0.8.0 is published. - copick >= 1.28.0 (released; copick/copick#479, #480, #492, #494). ## Testing - `pytest tests`: 9 passed. - Scripted self-tests driving ChimeraX 1.12 over REST, on a CryoET Data Portal test project with filaments, picks, instance and panoptic segmentations: - display, tables, stepper, saving: 39 checks; - undo / cut / join / 3D-selection: 53 checks. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
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🤖 I have created a release beep boop
0.8.0 (2026-10-06)
✨ Features
🐞 Bug Fixes
Merging this PR will release copick-shared-ui on PyPI.