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Pull requests: deeptools/deepTools

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Pull requests list

4.0.0 installation
#1429 opened Jun 22, 2026 by WardDeb Member Loading…
plotHeatmap: add --plotColors argument for profile plot line colors
#1427 opened May 21, 2026 by niekwit Loading…
Clarify GC bias preference in computeGCBias documentation
#1420 opened Oct 3, 2025 by yuw444 Loading…
1 of 4 tasks
[computeMatrixOperations] Add "arithmetic" and "mean" functions to combine sets of matrices generated with computeMatrix before plotting with plotHeatmap
#1419 opened Sep 29, 2025 by VonAlphaBisZulu Loading…
np.warnings is deprecated
#1412 opened Jul 16, 2025 by vivekbhr Member Loading…
1 of 4 tasks
[Docs] Adding diagram visualization for deepTools
#1408 opened Jul 4, 2025 by ivanmilevtues Loading…
1 of 4 tasks
Fixed erroneous args.args in silhouette option of plotHeatmap.py
#1394 opened Apr 15, 2025 by meekrob Loading…
3 tasks
added support for warnings stdlib
#1393 opened Apr 14, 2025 by AdriTara Loading…
4 tasks done
v4 and Galaxy-specific documentation updates
#1390 opened Mar 28, 2025 by wm75 • Draft
[WIP] fixing planemo tests
#1375 opened Jan 24, 2025 by pavanvidem Collaborator • Draft
1 of 4 tasks
5
add plotPCA test
#1374 opened Jan 23, 2025 by pavanvidem Collaborator Loading…
3
Add pytests for plotProfiler
#1373 opened Jan 23, 2025 by SaimMomin12 Collaborator Loading…
1 of 5 tasks
Add pytests for fingerprint plot
#1372 opened Jan 23, 2025 by SaimMomin12 Collaborator Loading…
1 of 5 tasks
7
Add tests for plotEnrichment
#1371 opened Jan 23, 2025 by pavanvidem Collaborator Loading…
Added pytests for plotcorrelation tool
#1370 opened Jan 23, 2025 by SaimMomin12 Collaborator Loading…
1 of 5 tasks
2
Added some tests for the rust functions
#1369 opened Jan 22, 2025 by gerikson Collaborator Loading…
4 tasks
2
alignmentSieve: Adding the option to keep the original tags in the processed BAM
#1255 opened Sep 14, 2023 by samuelruizperez Loading…
1 of 4 tasks
fix fully overlap reads
#1220 opened Jun 4, 2023 by y9c Loading…
Dev compute matrix strand 20220301
#1128 opened Mar 1, 2022 by joshtburdick Loading…
1 of 4 tasks
Adding independent ranges by sample option: for zMax zMin yMin and y…
#1116 opened Jan 20, 2022 by organic-chemistry Loading…
3 tasks
1
move legend to up and fix y-axis inward if using different ymax
#1078 opened Jun 30, 2021 by xubeisi Loading…
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