Issues

• Support for local execution

  enhancement
  elixir-no-nels/Selma#34 · Filter by author oskarvid opened on Feb 19, 2020 · Milestone 4

• Explore building the Singularity image with Travis

  enhancement
  elixir-no-nels/Selma#33 · Filter by author oskarvid opened on Feb 19, 2020 · Milestone 4

• Figure out how gvanno can fit in to the workflow

  enhancementquestion
  elixir-no-nels/Selma#32 · Filter by author oskarvid opened on Feb 19, 2020

• Upgrade Singularity to the latest supported version on TSD

  enhancement
  elixir-no-nels/Selma#31 · Filter by author oskarvid opened on Feb 19, 2020

• Upgrade GATK to the latest version

  enhancement
  elixir-no-nels/Selma#30 · Filter by author oskarvid opened on Feb 19, 2020

• Potential issue if we officially support exome (interval file) data analysis

  question
  elixir-no-nels/Selma#29 · Filter by author oskarvid opened on Feb 19, 2020

• Run hap.py on wgs output files

  elixir-no-nels/Selma#28 · Filter by author oskarvid opened on Feb 19, 2020

• Add version numbers where necessary

  elixir-no-nels/Selma#27 · Filter by author oskarvid opened on Feb 17, 2020 · Milestone 3

• Inform user of which sample/s failed

  enhancement
  elixir-no-nels/Selma#26 · Filter by author oskarvid opened on Feb 17, 2020 · Milestone 3

• Reconsider how the -e flag should function

  enhancement
  elixir-no-nels/Selma#25 · Filter by author oskarvid opened on Feb 11, 2020 · Milestone 3

• Remove code from the settings file

  enhancement
  elixir-no-nels/Selma#24 · Filter by author oskarvid opened on Feb 11, 2020 · Milestone 3

• Required parameter "-o" not detected as missing if not present.

  bug
  elixir-no-nels/Selma#21 · Filter by author kjellp opened on Jan 24, 2020 · Milestone 3
  2

• Move most or all command line options to the settings file

  enhancement
  elixir-no-nels/Selma#19 · Filter by author oskarvid opened on Jan 21, 2020 · Milestone 3