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Adapt likelihood functions to MethylCounts and update test, manuals, and examples (alpha version). - #154

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kasperdanielhansen merged 7 commits into

hansenlab:develfrom

SrenBlikdal:devel

Nov 19, 2025

Merged

Adapt likelihood functions to MethylCounts and update test, manuals, and examples (alpha version). #154
kasperdanielhansen merged 7 commits into
hansenlab:develfrom
SrenBlikdal:devel

Commits on Nov 6, 2025
- Add type=Cov to getMethylCounts and adjust likelihood functions to U for unmethylated
  SrenBlikdal
  committed
  cdd2786
- merge changes from hansen lab into fork
  SrenBlikdal
  committed
  b300f25
Commits on Nov 7, 2025
Commits on Nov 10, 2025
- Update examples in likelihood man files to use MethylCounts instead of bsseq
  SrenBlikdal
  committed
  0deb59a
- Merge branch 'devel' of https://github.com/hansenlab/bsseq into devel
  SrenBlikdal
  committed
  dc9f3a3