vre

VRE analysis project

Recombination detection within the VRE groups from 2014

Name		Name	Last commit message	Last commit date
ClonalFrame		ClonalFrame
Phylogenetics		Phylogenetics
figs		figs
final_data		final_data
final_figures		final_figures
outbreaker		outbreaker
pangenome		pangenome
phylogeny_code		phylogeny_code
results/fastqc_on_RD_fails		results/fastqc_on_RD_fails
scripts		scripts
.gitignore		.gitignore
All_MLST_Results.csv		All_MLST_Results.csv
README.md		README.md
Tn_data.csv		Tn_data.csv
VRE_metadataInclClinical_12022015.csv		VRE_metadataInclClinical_12022015.csv
VRE_metadataInclClinical_12022015_pm.csv		VRE_metadataInclClinical_12022015_pm.csv
VREf_pangenome_20150213_renamed_PresenceAbsence.csv		VREf_pangenome_20150213_renamed_PresenceAbsence.csv
VREf_pangenome_20150213_renamed_PresenceAbsence_transposed.csv		VREf_pangenome_20150213_renamed_PresenceAbsence_transposed.csv
pangenome_annotation_110215.sh		pangenome_annotation_110215.sh

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