Repository navigation
Guide on how to transform MIMIC IV Demo data into MedRecord #463
Description
Activity
- changed the title
[-]Guide on how transform MIMIC IV Demo data to MedRecord[/-][+]Guide on how to transform MIMIC IV Demo data into MedRecord[/+]on Feb 18, 2026 mimic_medrecord.md
docs: add MIMIC-IV demo MedRecord guide- introduce step-by-step guide for transforming MIMIC-IV demo data into a MedRecord
- include instructions for downloading dataset from PhysioNet
- explain pandas → polars → MedRecord workflow
- emphasize MedModels group concept for cohort definition
docs: add MedRecord example script for MIMIC-IV demo
- implement reproducible example used in documentation
- structure code into logical sections (load, transform, build, groups, inspect)
- align script with literalinclude blocks in user guide
docs: add Query Engine guide using MIMIC-IV demo
- demonstrate node and edge queries on MedRecord
- include examples for cohort selection (age, mortality)
- show reuse of queries and group creation
- align with MedModels querying API
docs: add Query Engine example script for MIMIC-IV demo
- provide executable examples for node and edge queries
- ensure consistency with MedRecord guide dataset and groups
- support literalinclude and exec-literalinclude blocks
Hey @camontefusco
thanks for the comments!
Could you fork this repository, add your changes and then create a Pull Request from that fork?
The base branch for the pull request should beepic/462-improve-user-guide.
The users need a guide that explains how to transform the MIMIC-IV Clinical Database Demo into a MedRecord format.
Utilizing the groups conceot in the MedRecord is crucial: https://www.medmodels.de/docs/medmodels/latest/user_guide/02_medrecord.html#adding-groups-to-a-medrecord
This group concept needs to be stressed and explained.
The guide needs to explain: