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SOF-8051: notebooks that upload UTK's SPM run and NLR's data - #374

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feature/SOF-8051

Commits on Sep 21, 2026

feat(SOF-8051): notebook that uploads an SPM run

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d9cc9bd
fix(SOF-8051): the upload notebook carries its script and one host

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be4b3c6
fix(SOF-8051): uploader follows the placement model — a sample set per run

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fc34ff1
fix(SOF-8051): uploader review round; the notebook says wafer

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c1e6e31

Commits on Sep 22, 2026

fix(SOF-8051): --emit-example thins the curves

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bc4b50d
fix(SOF-8051): the uploader takes a physical id and leaves sets bare

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0477bdb
fix(SOF-8051): sample names from the given physical id

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2fa6494
fix(SOF-8051): PHYSICAL_ID has no default — the human names the piece

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44b459b
feat(SOF-8051): notebook that uploads NLR's data for one piece

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9600f40
fix(SOF-8051): the notebooks point at alphafilm.mat3ra.com, where the labs upload

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a092282
fix(SOF-8051): the install cell brings mat3ra-notebooks-utils, which the authenticate cells import

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b314ad1
fix(SOF-8051): the NLR path validates, and its inputs are checked before use

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e603a48
fix(SOF-8051): an existing sample set takes metadata it does not have yet

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0b17199
fix(SOF-8051): a duplicate pad is an error, and a set takes records inside a key it has

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588d8b8
refactor(SOF-8051): one upload path, and `files` is the list of what to upload

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31e7b6a
fix(SOF-8051): an image keeps the path that makes its name unique

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7dedd1a
refactor(SOF-8051): the uploader is the uploader; each instrument reads its own files

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8be3766
refactor(SOF-8051): the uploader takes documents; parsing, serializing and the workflow are elsewhere

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3cb193b
fix(SOF-8051): pin the standata branch the instruments are registered on

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54d86cc
feat(SOF-8051): one file states exactly what to install, and the example says how to run it

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0a6eb9c
update cleanup
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85a7867
fix(SOF-8051): pin the versions, drop the machinery that asked which version you had

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ef1b1df
fix(SOF-8051): validate against the schema, not a generated model

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0294e9e
fix(SOF-8051): the API token leaves the notebook, and three review points with it

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ec90ca6
fix(SOF-8051): put back the notebook cells that were yours

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7f9b805
clean
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d11829e
clean
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7b9606c
revert(SOF-8051): the notebooks do not go in the docs

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e9475ed

Commits on Oct 6, 2026

feat(SOF-8051): the Library - the piece every Sample Set on it belongs to

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52f6be2
feat(SOF-8051): topography metrics already on the platform become properties

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0587f3f
fix(SOF-8051): three review findings on the Library upload

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5298b52
SOF-8051: NLR pads inferred from the I-V file; wafer dimensions and frame

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c8d8f7f
SOF-8051: film thickness in um, as the XRF file gives it

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545372e
SOF-8051: README - XRF is on the bare-film grid, I-V on the pads

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5feffec
SOF-8051: placeholder instrument names; the deliveries do not name their machines

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0cafb2b
SOF-8051: NLR photographs are the Library's, not the XRF grid set's

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8b5feb1