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…d index links Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
…simulation cells at current HEAD Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
…ustomization trimmed to what the notebook does, naming, re-quoted cells Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
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Adds the simulation tutorial for graphene on O-terminated α-quartz SiO₂(0001) — p-type doping and the
gap at the Dirac point — and updates the structure tutorial it builds on.
SOF-8065. Notebook side: mat3ra/api-examples#383.
interface-2d-3d-graphene-silicon-dioxide-simulation.md, the ten sections of thegraphene substitution simulation page. §4 quotes the notebook's parameter cells verbatim. §6 puts
our values beside the paper's (p-type; E_D − E_F +1.171 eV against +1.28; gap at K 0.062 eV against
0.130, unrelaxed), with a crop of Kang Fig. 3(a) and our band structure on the same path and energy
window. The relaxed regime did not converge in the 4 h limit; the band structure after 5 relaxation
steps (+1.179 eV, 0.071 eV) is given beside it.
about 20 Å of vacuum above graphene, graphene shifted to the manuscript's metastable registry, the
cell in the 120° setting and centered along z — each quoted from the notebook. A side view of the
built interface replaces the screenshots that showed thickness 7.
mkdocs.ymlandmkdocs-guide.yml; the "(Coming Soon)" entries inoverview.mdandindex-guide.mdlink to the page.@Kang2008already existed. Three images (LFS).mkdocs buildexits 0 on both sites. The JupyterLite embed resolves after api-examples merges andJupyterLite is rebuilt.
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