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[chore]: separate update example gha by model #428

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650e860
separate update example gha by model
Schiano-NOAA Oct 19, 2026
9bd3124
add notes to specify example data in gha script and update vermilion …
Schiano-NOAA Oct 21, 2026
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39 changes: 39 additions & 0 deletions .github/workflows/update-bam-example-data.yml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,39 @@
# Update example data when convert_output.R or variable-name resources change
name: update-bam-example-data
on:
pull_request:
branches: [main]
paths:
- 'R/conout_bam.R'
- 'inst/resources/bam_var_names.csv'
workflow_dispatch:
jobs:
update-example-data:
runs-on: ubuntu-latest
permissions:
contents: write
steps:
- uses: actions/checkout@v4
with:
repository: ${{ github.event_name == 'pull_request' && github.event.pull_request.head.repo.full_name || github.repository }}
ref: ${{ github.event_name == 'pull_request' && github.event.pull_request.head.ref || github.ref_name }}

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::pak, any::usethis, local::.

- name: Update example data
run: Rscript data-raw/DATASET_BAM.R

- name: Commit and push updated example data
if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
run: |
git config user.name "github-actions[bot]"
git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
git add data/vermilion_snapper.rda
git diff --cached --quiet || git commit -m "chore: update BAM vermilion snapper example from converter resource changes (triggered by $(git log -1 --pretty=format:'%h %s' HEAD)) [skip ci]"
git push
39 changes: 39 additions & 0 deletions .github/workflows/update-example-data.yml
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@@ -0,0 +1,39 @@
# Update ss3 example data from Report.sso when convert_output.R or variable-name resources change
name: update-example-data
on:
pull_request:
branches: [main]
paths:
- 'R/conout_ss3.R'
- 'inst/resources/ss3_var_names.csv'
workflow_dispatch:
jobs:
update-example-data:
runs-on: ubuntu-latest
permissions:
contents: write
steps:
- uses: actions/checkout@v4
with:
repository: ${{ github.event_name == 'pull_request' && github.event.pull_request.head.repo.full_name || github.repository }}
ref: ${{ github.event_name == 'pull_request' && github.event.pull_request.head.ref || github.ref_name }}

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::pak, any::usethis, local::.

- name: Update example data
run: Rscript data-raw/DATASET.R

- name: Commit and push updated example data
if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
run: |
git config user.name "github-actions[bot]"
git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
git add data/example_data.rda
git diff --cached --quiet || git commit -m "chore: update SS3 example_data from converter resource changes (triggered by $(git log -1 --pretty=format:'%h %s' HEAD)) [skip ci]"
git push
4 changes: 2 additions & 2 deletions .github/workflows/update-rceattle-example-data.yml
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Original file line number Diff line number Diff line change
@@ -1,10 +1,10 @@
# Update example data when convert_output.R or variable-name resources change
# Update Rceattle example data when convert_output.R or variable-name resources change
name: update-rceattle-example-data
on:
pull_request:
branches: [main]
paths:
- 'R/convert_output.R'
- 'R/conout_rceattle.R'
- 'inst/resources/rceattle_var_names.csv'
workflow_dispatch:
jobs:
Expand Down
15 changes: 6 additions & 9 deletions .github/workflows/update-ss3-example-data.yml
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Original file line number Diff line number Diff line change
@@ -1,14 +1,11 @@
# Update example data when convert_output.R or variable-name resources change
name: update-example-data
# Update ss3 example data from r4ss object when convert_output.R or variable-name resources change
name: update-ss3-example-data
on:
pull_request:
branches: [main]
paths:
- 'R/convert_output.R'
- 'inst/resources/bam_var_names.csv'
- 'R/conout_ss3.R'
- 'inst/resources/ss3_var_names.csv'
- 'inst/resources/rceattle_var_names.csv'
- 'inst/resources/fims_var_names.csv'
workflow_dispatch:
jobs:
update-example-data:
Expand All @@ -30,13 +27,13 @@ jobs:
extra-packages: any::pak, any::usethis, local::.

- name: Update example data
run: Rscript data-raw/DATASET.R
run: Rscript data-raw/DATASET_SS3.R

- name: Commit and push updated example data
if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
run: |
git config user.name "github-actions[bot]"
git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
git add data/example_data.rda
git diff --cached --quiet || git commit -m "chore: update example_data from converter resource changes (triggered by $(git log -1 --pretty=format:'%h %s' HEAD)) [skip ci]"
git add data/ss3_simple.rda
git diff --cached --quiet || git commit -m "chore: update SS3 r4ss example_data from converter resource changes (triggered by $(git log -1 --pretty=format:'%h %s' HEAD)) [skip ci]"
git push
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