Auto update non py ports + bump arrow, py-arrow and gdal

.github/vcpkg-baseline.txt

@@ -0,0 +1 @@
+e99d87dcf02926bfd629560e11e156329d5720c1

.github/workflows/macos.yml

@@ -53,11 +53,16 @@ jobs:
           sudo mkdir -p /usr/local/gfortran
           sudo ln -sf $HOMEBREW_PREFIX/Cellar/gcc@${GCC_VERSION}/*/lib/gcc/${GCC_VERSION} /usr/local/gfortran/lib
 
+      - name: 🔖 Read vcpkg baseline
+        id: vcpkg-baseline
+        shell: bash
+        run: echo "ref=$(cat .github/vcpkg-baseline.txt)" >> "$GITHUB_OUTPUT"
+
       - name: 🐕 Checkout vcpkg
         uses: actions/checkout@v7
         with:
           repository: microsoft/vcpkg
-          ref: 9e593bb18ea69cc5095e012465dcd675a822ed0d # 2026.07.29 - TODO: can we have a canonical baseline for tests?
+          ref: ${{ steps.vcpkg-baseline.outputs.ref }}
           path: vcpkg
           fetch-depth: 1
 

.github/workflows/windows.yml

@@ -40,11 +40,16 @@ jobs:
         with:
           arch: ${{ matrix.arch }}
 
+      - name: 🔖 Read vcpkg baseline
+        id: vcpkg-baseline
+        shell: bash
+        run: echo "ref=$(cat .github/vcpkg-baseline.txt)" >> "$GITHUB_OUTPUT"
+
       - name: 🐕 Checkout vcpkg
         uses: actions/checkout@v7
         with:
           repository: microsoft/vcpkg
-          ref: 9e593bb18ea69cc5095e012465dcd675a822ed0d # 2026.07.29 - TODO: can we have a canonical baseline for tests?
+          ref: ${{ steps.vcpkg-baseline.outputs.ref }}
           path: vcpkg
           fetch-depth: 1
 

ports/arrow/0008-pyarrow-relative-rpath.patch

@@ -0,0 +1,23 @@
+diff --git a/python/CMakeLists.txt b/python/CMakeLists.txt
+index 3024945..8d5835b 100644
+--- a/python/CMakeLists.txt
++++ b/python/CMakeLists.txt
+@@ -298,8 +298,16 @@ find_package(Arrow REQUIRED)
+ if(APPLE
+    AND NOT PYARROW_BUNDLE_ARROW_CPP
+    AND ARROW_SHARED_LIB)
+-  get_filename_component(_arrow_lib_dir "${ARROW_SHARED_LIB}" DIRECTORY)
+-  list(APPEND CMAKE_INSTALL_RPATH "${_arrow_lib_dir}")
++  if(PYARROW_INSTALL_RPATH)
++    # vcpkg stages the install tree and then moves it, so the location of
++    # libarrow is only stable relative to the extension modules. Let the
++    # caller supply that relative RPATH instead of baking in the absolute
++    # directory the libraries happen to sit in at build time.
++    list(APPEND CMAKE_INSTALL_RPATH "${PYARROW_INSTALL_RPATH}")
++  else()
++    get_filename_component(_arrow_lib_dir "${ARROW_SHARED_LIB}" DIRECTORY)
++    list(APPEND CMAKE_INSTALL_RPATH "${_arrow_lib_dir}")
++  endif()
+ endif()
+
+ macro(define_option name description arrow_option)

ports/arrow/portfile.cmake

@@ -1,8 +1,11 @@
+# AUTO_UPDATE
+# GITHUB_REPO apache/arrow
+# GITHUB_REF  apache-arrow-${VERSION}
 vcpkg_download_distfile(
     ARCHIVE_PATH
     URLS "https://archive.apache.org/dist/arrow/arrow-${VERSION}/apache-arrow-${VERSION}.tar.gz"
     FILENAME apache-arrow-${VERSION}.tar.gz
-    SHA512 c687e50dfcdbf7e0e39710224360d35d9aa734452b3a47adc8c101f3019b6b4116310c05b9f3cd0a5ed4ad9b7bd8fb88edb70e79b3cbd413a57e5e35e4554a6c
+    SHA512 e75d384b4fdbdee29eb8ad29800c731843e7c43d90a43995dcc77390008723537791e212333178625345c718bdab15e0f3d8c12aa86b336918598c7d3fefc6e5
 )
 vcpkg_extract_source_archive(
     SOURCE_PATH
@@ -13,6 +16,7 @@ vcpkg_extract_source_archive(
         0004-android-datetime.patch
         0005-cmake-msvcruntime.patch
         0007-use-vcpkg-mimalloc.patch
+        0008-pyarrow-relative-rpath.patch
 )
 
 # Check cpp/cmake_modules/DefineOptions.cmake for option dependencies -
@@ -199,16 +203,67 @@ if("python" IN_LIST FEATURES)
     set(ENV{SETUPTOOLS_SCM_PRETEND_VERSION} "${VERSION}")
     set(ENV{PDM_BUILD_SCM_VERSION} "${VERSION}")
 
-    if (NOT "${VCPKG_BUILD_TYPE}" STREQUAL "")
-        set(build_opts "--build-type=${VCPKG_BUILD_TYPE}")
+    # Since 24.0.0 pyarrow has no setup.py and builds with scikit-build-core,
+    # which shells out to cmake and ninja. When it cannot find them on PATH it
+    # asks pip for them as wheels instead, which --no-index forbids, so hand it
+    # the ones vcpkg already has. The generator has no config-setting; CMake
+    # picks it up from the environment.
+    vcpkg_find_acquire_program(NINJA)
+    get_filename_component(ninja_dir "${NINJA}" DIRECTORY)
+    get_filename_component(cmake_dir "${CMAKE_COMMAND}" DIRECTORY)
+    vcpkg_add_to_path(PREPEND "${ninja_dir}")
+    vcpkg_add_to_path(PREPEND "${cmake_dir}")
+    set(ENV{CMAKE_GENERATOR} "Ninja")
+
+    if(VCPKG_BUILD_TYPE STREQUAL "debug")
+        set(py_build_type "Debug")
     else()
-        set(build_opts "--build-type=release")
+        set(py_build_type "Release")
+    endif()
+
+    # pyarrow's find_package(Python3Alt) asks CMake for Development.Module and
+    # NumPy. CMake derives the header and library locations from the
+    # interpreter's prefix, but the python3 port moves them: headers go to
+    # include/python<X.Y> and, on Windows, the import library is lib/pythonXY.lib.
+    # Left alone this fails with
+    #   Could NOT find Python3 (missing: Development.Module NumPy)
+    # so point CMake straight at them.
+    execute_process(
+        COMMAND "${PYTHON3_VENV}" -c "import sys; print('%d.%d' % sys.version_info[:2])"
+        OUTPUT_VARIABLE py_version
+        OUTPUT_STRIP_TRAILING_WHITESPACE
+        COMMAND_ERROR_IS_FATAL ANY
+    )
+    execute_process(
+        COMMAND "${PYTHON3_VENV}" -c "import numpy; print(numpy.get_include())"
+        OUTPUT_VARIABLE py_numpy_include
+        OUTPUT_STRIP_TRAILING_WHITESPACE
+        COMMAND_ERROR_IS_FATAL ANY
+    )
+
+    set(py_hints
+        "--config-settings=cmake.define.Python3_EXECUTABLE=${PYTHON3_VENV}"
+        "--config-settings=cmake.define.Python3_INCLUDE_DIR=${CURRENT_INSTALLED_DIR}/include/python${py_version}"
+        "--config-settings=cmake.define.Python3_NumPy_INCLUDE_DIR=${py_numpy_include}"
+    )
+    if(VCPKG_TARGET_IS_WINDOWS)
+        # Extension modules must link the import library on Windows
+        string(REPLACE "." "" py_version_nodot "${py_version}")
+        list(APPEND py_hints
+            "--config-settings=cmake.define.Python3_LIBRARY=${CURRENT_INSTALLED_DIR}/lib/python${py_version_nodot}.lib")
     endif()
 
+    # The extensions land in <prefix>/lib/python3.X/site-packages/pyarrow, so
+    # libarrow in <prefix>/lib is three directories up. Only a relative RPATH
+    # survives vcpkg moving the staged tree into the installed one
+    # (see 0008-pyarrow-relative-rpath.patch).
     vcpkg_execute_required_process(
-        COMMAND "${PYTHON3_VENV}" "setup.py"  
-        "build_ext" ${build_opts} "--cmake-generator" "Ninja" "--rpath" "@loader_path/../../../"
-        "install"  "--prefix" "${CURRENT_PACKAGES_DIR}" 
+        COMMAND "${PYTHON3_VENV}" -m pip install "${SOURCE_PATH}/python"
+        --no-build-isolation --no-deps --no-index
+        --prefix "${CURRENT_PACKAGES_DIR}"
+        "--config-settings=cmake.build-type=${py_build_type}"
+        "--config-settings=cmake.define.PYARROW_INSTALL_RPATH=@loader_path/../../../"
+        ${py_hints}
         LOGNAME "python-build-${TARGET_TRIPLET}"
         WORKING_DIRECTORY "${SOURCE_PATH}/python"
     )

ports/arrow/vcpkg.json

@@ -1,7 +1,6 @@
 {
   "name": "arrow",
-  "version": "23.0.1",
-  "port-version": 1,
+  "version": "25.0.1",
   "description": "Cross-language development platform for in-memory analytics",
   "homepage": "https://arrow.apache.org",
   "license": "Apache-2.0",

ports/gdal/portfile.cmake

@@ -1,8 +1,9 @@
+# AUTO_UPDATE
 vcpkg_from_github(
     OUT_SOURCE_PATH SOURCE_PATH
     REPO OSGeo/gdal
     REF "v${VERSION}"
-    SHA512 3b915c38cc7c9eb139df9335a90a2f6fd123c54e19ecb1f22670400eac76e317c5334f95dff5875c9c3fde8a0ef0f7aea86fa58ad42afaee823a46c6616e9c17
+    SHA512 57e371c02557ed0db210a6f992648602d9a7344679069a5101b3e25a49503683487009e96ad0707c780bac15cbd78415894096728d058304ea7f305b90628f69
     HEAD_REF master
     PATCHES
         find-link-libraries.patch

ports/gdal/sqlite3.diff

@@ -1,8 +1,8 @@
 diff --git a/cmake/modules/packages/FindSQLite3.cmake b/cmake/modules/packages/FindSQLite3.cmake
-index 903465b3c9..5d3a067e50 100644
+index 1dd364f..b9a0963 100644
 --- a/cmake/modules/packages/FindSQLite3.cmake
 +++ b/cmake/modules/packages/FindSQLite3.cmake
-@@ -77,7 +77,7 @@ if(SQLite3_INCLUDE_DIR AND SQLite3_LIBRARY)
+@@ -79,7 +79,7 @@ if(SQLite3_INCLUDE_DIR AND SQLite3_LIBRARY)
      cmake_push_check_state(RESET)
      # check column metadata
      set(CMAKE_REQUIRED_INCLUDES ${SQLite3_INCLUDE_DIR})
@@ -11,7 +11,7 @@ index 903465b3c9..5d3a067e50 100644
        if(PC_SQLITE3_STATIC_LDFLAGS)
          set(CMAKE_REQUIRED_LIBRARIES ${PC_SQLITE3_STATIC_LDFLAGS})
        else()
-@@ -111,15 +111,10 @@ if(SQLite3_INCLUDE_DIR AND SQLite3_LIBRARY)
+@@ -113,15 +113,10 @@ if(SQLite3_INCLUDE_DIR AND SQLite3_LIBRARY)
        endif()
      else()
          set(CMAKE_REQUIRED_LIBRARIES ${SQLite3_LIBRARY})
@@ -29,21 +29,22 @@ index 903465b3c9..5d3a067e50 100644
      # Invalidate cached variables if SQLite3_LIBRARY changes
      file(TIMESTAMP "${SQLite3_LIBRARY}" SQLite3_LIBRARY_TIMESTAMP)
      if( SQLite3_LIBRARY_TIMESTAMP_OLD_VAL AND
-@@ -179,6 +174,7 @@ if(SQLite3_FOUND)
+@@ -181,6 +176,7 @@ if(SQLite3_FOUND)
                            INTERFACE_INCLUDE_DIRECTORIES "${SQLite3_INCLUDE_DIRS}"
                            IMPORTED_LINK_INTERFACE_LANGUAGES "C"
                            IMPORTED_LOCATION "${SQLite3_LIBRARY}")
 +  endif()
      if(SQLite3_HAS_COLUMN_METADATA)
-         set_property(TARGET SQLite::SQLite3 APPEND PROPERTY
+         set_property(TARGET SQLite3::SQLite3 APPEND PROPERTY
                       INTERFACE_COMPILE_DEFINITIONS "SQLite3_HAS_COLUMN_METADATA")
-@@ -187,5 +183,9 @@ if(SQLite3_FOUND)
-         set_property(TARGET SQLite::SQLite3 APPEND PROPERTY
+@@ -189,6 +185,10 @@ if(SQLite3_FOUND)
+         set_property(TARGET SQLite3::SQLite3 APPEND PROPERTY
                       INTERFACE_COMPILE_DEFINITIONS "SQLite3_HAS_RTREE")
      endif()
-+  get_target_property(definitions SQLite::SQLite3 INTERFACE_COMPILE_DEFINITIONS)
++  get_target_property(definitions SQLite3::SQLite3 INTERFACE_COMPILE_DEFINITIONS)
 +  if(definitions)
 +    list(REMOVE_DUPLICATES definitions)
-+    set_target_properties(SQLite::SQLite3 PROPERTIES INTERFACE_COMPILE_DEFINITIONS "${definitions}")
++    set_target_properties(SQLite3::SQLite3 PROPERTIES INTERFACE_COMPILE_DEFINITIONS "${definitions}")
    endif()
- endif()
+
+   # Alias SQLite3::SQLite3 to SQLite::SQLite3 since that's what PROJ will

ports/gdal/vcpkg.json

@@ -1,6 +1,6 @@
 {
   "name": "gdal",
-  "version-semver": "3.12.4",
+  "version-semver": "3.13.3",
   "description": "The Geographic Data Abstraction Library for reading and writing geospatial raster and vector data",
   "homepage": "https://gdal.org",
   "license": null,

ports/py-isort/portfile.cmake

@@ -2,7 +2,7 @@ vcpkg_from_pythonhosted(
     OUT_SOURCE_PATH SOURCE_PATH
     PACKAGE_NAME    isort
     VERSION         ${VERSION}
-    SHA512          6ea1a3cd6ca4cc489e332f7d7c7e0d8138a734ecc0cf305a0324fe42c8ea0af9f6e28bd5b3cd7108d260fa93bf89a844b59589baf75c04d82e7112c54b7d305f
+    SHA512          edf386ec3497c1b9e540015dea76f8328593f43d2aa391acad459f175fe1b3a552d4ca0e75187bc92ef1319cb4c77bb774cb22ef9b46cf89daacc754bb454f93
 )
 
 vcpkg_python_build_and_install_wheel(SOURCE_PATH "${SOURCE_PATH}")

ports/py-isort/vcpkg.json

@@ -1,10 +1,11 @@
 {
   "name": "py-isort",
-  "version": "8.0.1",
+  "version": "9.0.1",
   "description": "A Python utility / library to sort Python imports.",
   "homepage": "https://pycqa.github.io/isort/",
   "dependencies": [
     "py-hatchling",
+    "py-mypy-extensions",
     {
       "name": "py-poetry-core",
       "host": true

ports/py-mypy-extensions/portfile.cmake

@@ -0,0 +1,17 @@
+set(VCPKG_BUILD_TYPE release)
+
+vcpkg_from_pythonhosted(
+    OUT_SOURCE_PATH SOURCE_PATH
+    PACKAGE_NAME    mypy-extensions
+    VERSION         ${VERSION}
+    SHA512          b946d48ff85a2c384049058a3bd822942a91114f818374764722962869e47ae0b86efee4b58b3c14a974e6711a8c1651ca6a1c0a448fa4ea03f9190c63b3dae0
+    FILENAME        mypy_extensions
+)
+
+vcpkg_python_build_and_install_wheel(SOURCE_PATH "${SOURCE_PATH}")
+
+vcpkg_install_copyright(FILE_LIST "${SOURCE_PATH}/LICENSE")
+
+vcpkg_python_test_import(MODULE "mypy_extensions")
+
+set(VCPKG_POLICY_EMPTY_INCLUDE_FOLDER enabled)

ports/py-mypy-extensions/vcpkg.json

@@ -0,0 +1,22 @@
+{
+  "name": "py-mypy-extensions",
+  "version": "1.1.0",
+  "description": "Experimental type system extensions for programs checked with mypy",
+  "homepage": "https://github.com/python/mypy_extensions",
+  "license": "MIT",
+  "dependencies": [
+    {
+      "name": "py-flit-core",
+      "host": true
+    },
+    {
+      "name": "py-setuptools",
+      "host": true
+    },
+    "python3",
+    {
+      "name": "vcpkg-python-scripts",
+      "host": true
+    }
+  ]
+}