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Add pathway analysis env - #611

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parulsarma-a wants to merge 15 commits into

openenv:mainfrom

karthik19967829:add-pathway-analysis-env

Open

Add pathway analysis env#611
parulsarma-a wants to merge 15 commits into
openenv:mainfrom
karthik19967829:add-pathway-analysis-env

Commits on Mar 21, 2026
- Add pathway_analysis_env: toy computational biology environment
  karthik19967829
  committed
  2775476
Commits on Mar 29, 2026
- feat(pathway_analysis_env): pipeline DE/ORA, Gradio Pathway lab, cases and tests
  
  Parul Sarma Aryasomayajula
  authored and
  Parul Sarma Aryasomayajula
  committed
  ef7a63c
- feat(pathway_analysis_env): understand_experiment_design action and agent workflow docs
  
  Parul Sarma Aryasomayajula
  authored and
  Parul Sarma Aryasomayajula
  committed
  f7a3861
Commits on Apr 25, 2026
- feat(pathway_analysis_env): add GEO benchmark runners and advisor deck
  
  Parul Sarma Aryasomayajula
  authored and
  Parul Sarma Aryasomayajula
  committed
  460eba2
Commits on Oct 26, 2026
- fix(pathway): confine saved-run reads to outputs
  burtenshaw
  committed
  daa7300
- Fix pathway analysis contrast, serialization, and input regressions
  burtenshaw
  committed
  1fddc0a
- fix(pathway): render unknown Enrichr comparison sizes
  burtenshaw
  committed
  772be6e
- Merge main to restore runtime validation project for CI
  burtenshaw
  committed
  6b5c980
- style(pathway): apply CI import sorting and formatting
  burtenshaw
  committed
  2ff263b
- docs(pathway): sync environment page and catalog entries
  burtenshaw
  committed
  89c5010
- fix(pathway): preserve count and precomputed analysis contracts
  burtenshaw
  committed
  02cccf4
- fix(pathway): serve declared state and packaged app
  burtenshaw
  committed
  b3090bc
- fix(pathway): package nested case data assets
  burtenshaw
  committed
  21f8814
Commits on Oct 29, 2026
- Merge main into add-pathway-analysis-env
  burtenshaw
  committed
  31d296c
- fix(pathway): address author-table and reference input failures
  burtenshaw
  committed
  7daa465

Commits

Commits on Mar 21, 2026

Commits on Mar 29, 2026

Commits on Apr 25, 2026

Commits on Oct 26, 2026

Commits on Oct 29, 2026