Comparative REview of Algorithm and Method for proton-density fat fraction (PDFF) quantification (CREAM_PDFF)
The CREAM_PDFF is a multi-language toolbox developed to evaluate state-of-the art open source algorithms for fat-water separation.
| Reference | Referred as | Method | Code | 2D/3D | Spectrum choice | Echo spacing | Code acceleration | Year | Code repository (If not specified, it is on github.com) |
|---|---|---|---|---|---|---|---|---|---|
| Boehm et al. 8 | VLGCA | Graph-cut | Matlab | 2D | Free | Uniform | Parallel computing | 2021 | gitlab.com/christofboehm/fieldmap-graph-cut |
| Bydder et al. 7 | IDEAL-CE | IDEAL | Matlab | 3D | Model Constrained | Free | GPU computing | 2020 | marcsous/pdff |
| Andersson et al. 6 | MSGCA-A | Graph-cut | Matlab | 3D | Free | Uniform | No | 2018 | Snubben-B/FW-Recon-Spatial-Smoothing |
| Cui et al.5 | GOOSE | Graph-cut | Matlab | 2D | Fixed1 | Uniform / Free | No | 2015 | GOOSE code repository |
| Berglund et al.4 | MSGCA-B | Graph-cut | Python | 3D | Free | Uniform | No | 2017 | bretglun/fwqpbo |
| Liu˙ et al. 3 | B0-NICE | Region-based | Matlab | 3D | Fixed2 | Uniform | No | 2015 | B0-NICE code repository |
| Berglund et al.2 | Fatty-Riot-GC | Graph-cut | Matlab | 3D | Free | Uniform | No | 2012 | welcheb/fw_i3cm1i_3pluspoint_berglund_QPBO welcheb/FattyRiot |
| Hernando et al. 1 | Hernando-GC | Graph-cut | Matlab | 2D | Free | Uniform / Free | No | 2012 | Hernando-GC code repository |
1 ISMRM challenge spectrum
2 own spectrum
This open-source is described in the following article :
- Pierre Daudé, Tangi Roussel, Thomas Troalen, Patrick Viout, Diego Hernando, Maxime Guye, Frank Kober, Sylviane Confort Gouny, Monique Bernard, Stanislas Rapacchi. Comparative Review of Algorithm and Method for proton-density fat fraction (PDFF) quantification. Magn. Res. Med. 2023. Available from: [https://onlinelibrary.wiley.com/doi/full/10.1002/mrm.29860]
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Hernando D, Kellman P, Haldar JP, Liang Z-P. Robust water/fat separation in the presence of large field inhomogeneities using a graph cut algorithm. Magn Reson Med. 2009;NA-NA.
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Berglund J, Kullberg J. Three-dimensional water/fat separation and T 2* estimation based on whole-image optimization-Application in breathhold liver imaging at 1.5 T. Magn Reson Med. 2012;67:1684–93.
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Liu J, Drangova M. Method for B0 off-resonance mapping by non-iterative correction of phase-errors (B0-NICE): B0 Mapping with Multiecho Data. Magn Reson Med. 2015;74:1177–88.
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Berglund J, Skorpil M. Multi-scale graph-cut algorithm for efficient water-fat separation: Multi-Scale Graph-Cut Water/Fat Separation. Magn Reson Med. 2017;78:941–9.
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Cui C, Wu X, Newell JD, Jacob M. Fat water decomposition using globally optimal surface estimation (GOOSE) algorithm. Magn Reson Med. 2015;73:1289–99.
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Andersson J, Ahlström H, Kullberg J. Water-fat separation incorporating spatial smoothing is robust to noise. Magn Reson Imaging. 2018;50:78–83.
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Bydder M, Ghodrati V, Gao Y, Robson MD, Yang Y, Hu P. Constraints in estimating the proton density fat fraction. Magn Reson Imaging. 2020;66:1–8.
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Boehm C, Diefenbach MN, Makowski MR, Karampinos DC. Improved body quantitative susceptibility mapping by using a variable‐layer single‐min‐cut graph‐cut for field‐mapping. Magn Reson Med. 2021;85:1697–712.