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Software updates available - 14/09/2026 #49

Description

@github-actions

The software updates check has detected available updates.

Please review the following report and update the software versions as needed:

Updates available

Name Source Current Version Latest Version Date
alphafold_db FTP 1.0.1-docker29.0.1 v6
aster GitHub 1.23 v1.25 2026-04-20T09:21:20Z
auto-phylo-pipeliner GitHub 0.1.dev32 v2.0.0 2025-04-03T07:15:46Z
autoaugustus GitHub 2.5.5 v3.5.0 2022-09-23T17:06:14Z
bioconvert GitHub 1.2.0 v1.12.0 2026-03-10T10:50:56Z
biopython GitHub 1.87 biopython-188 2026-08-06T12:03:07Z
boltz-1 GitHub 0.4.1 v2.2.1 2025-09-08T15:58:30Z
ccp4 CCP4 7.0.2 9.0.017 06/08/2026
diamond GitHub 2.2.6 v2.2.7 2026-09-14T10:24:05Z
docker Docker 29.0.1 29.8.0 2026-09-03
emboss GitLab 6.6.0 archive/debian/6.6.0+dfsg-19 2026-07-08T23:24:28.000+02:00
entrez-direct FTP 10.0.20180927 26.2.20260912
feature-counts SourceForge 2.1.1 /subread-2.1.1/subread-2.1.1-Windows-x86_64.zip 2025-04-17 03:21:56
figtree GitHub 1.4.4 v1.5.0-beta1 2026-05-17T06:22:35Z
format_auto-pss-genome GitHub 1.0.0-docker29.0.1 v1.12.0 2024-09-19T09:10:30Z
freebayes GitHub 1.3.6 v1.3.10 2025-05-31T07:44:14Z
graphviz GitLab 2.43.0 16.1.0 2026-09-04T01:39:07.000+00:00
haddock-tools GitHub 07.06.2021 3.0.0 2021-06-07T10:31:49Z
hyphy GitHub 2.3.14 2.5.101 2026-06-18T15:25:18Z
igv GitHub 2.13.0 v3.0.0-beta.6 2026-09-08T21:51:32Z
ispip GitHub 2025.02.23 ISPIP 2022-03-02T14:23:52Z
jaligner GitHub 20.05.2026 v1.0 2013-07-04T12:46:14Z
kakscalculator SourceForge 2.0 /KaKs_Calculator2.0.rar 2010-06-27 03:23:33
metaeuk GitHub 41.0.0 7-bba0d80 2024-05-30T08:16:11Z
muscle GitHub 3.8.31 v5.3 2024-11-11T00:59:52Z
ncbi-datasets GitHub 18.36.0 v18.37.0 2026-09-09T18:04:01Z
omegamap GitHub 2019.06.08 git.v1.0 2018-04-13T16:26:07Z
pathvisio GitHub 3.3.0 3.4.0-alpha 2024-10-03T12:41:07Z
prokka GitHub 1.14.6 v1.15.6 2025-12-14T04:39:38Z
pss-genome-fs GitHub 1.14.0 v1.15.0 2026-01-16T16:18:51Z
pymol GitHub 2.3.0 v3.1.0 2025-01-25T04:19:47Z
qualimap Bitbucket 2.2.1 2.3 May 19, 2023
r_deseq2 Bioconductor 1.32.0_v2 1.52.0
r_edger Bioconductor 4.0.16 4.10.5
r_enhanced-volcano Bioconductor 1.12.0 1.30.0
r_pathfindr GitHub 2.4.2 v3.0.2 2026-07-01T10:00:32Z
r_project R Project 4.6.0 4.6.1 2026-06-24
r_sva Bioconductor 3.54.0 3.60.0
roary GitHub 3.6.0 v3.13.0 2019-11-06T10:55:40Z
rootdigger GitHub 2026.09.11 v1.8.0 2022-08-20T17:11:20Z
sapp GitLab 12.09.2019 v2.2.0 2026-05-29T17:40:58.000+02:00
scipio Scipio 1.4 1.4.1 2013-05-24
soapdenovo2 GitHub 2.0.4 r242 2018-05-14T01:58:24Z
sppider-seq GitHub 2026-05 v2.2.0 2026-08-03T14:33:23Z
subread SourceForge 2.1.1 /subread-2.1.1/subread-2.1.1-Windows-x86_64.zip 2025-04-17 03:21:56
tcoffee GitHub 12.0.7 Version_13.46.2.7c9e712d 2025-10-02T10:49:40Z
tm-align_server GitHub 1.0.2 20190426 2019-08-01T00:44:50Z
tmtools GitHub 1.0.1 v0.3.0 2025-11-09T06:01:56Z
whiscy GitHub 18.05.2019 v1.2.1 2024-06-27T09:14:43Z

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